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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN MRNA GUANYLYLTRANSFERASE
 
Authors :  K. Das, C. Chu, J. R. Thyminski, J. D. Bauman, R. Guan, W. Qiu, G. T. Montel E. Arnold, A. J. Shatkin
Date :  16 May 11  (Deposition) - 15 Jun 11  (Release) - 06 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.01
Chains :  Asym. Unit :  A,B,C,D,E,F,G
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  G  (1x)
Biol. Unit 7:  F  (1x)
Keywords :  Capping Enzyme, Ce, Hce, Gtase, M7Gpppn Cap, Gt/Dna Ligase Fold, Transcription Factor Spt5, Ctd, Hydrolase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Chu, K. Das, J. R. Tyminski, J. D. Bauman, R. Guan, W. Qiu, G. T. Montelione, E. Arnold, A. J. Shatkin
Structure Of The Guanylyltransferase Domain Of Human Mrna Capping Enzyme.
Proc. Natl. Acad. Sci. Usa V. 108 10104 2011
PubMed-ID: 21636784  |  Reference-DOI: 10.1073/PNAS.1106610108

(-) Compounds

Molecule 1 - MRNA-CAPPING ENZYME
    Chains: A, B, C, D, E, G, F
    EC Number: 3.1.3.33, 2.7.7.50
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET20B
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 229-567
    Gene: RNGTT, CAP1A
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HCAP1, HCE, POLYNUCLEOTIDE 5'-TRIPHOSPHATASE, MRNA 5'CAPPING, TPASE, MRNA GUANYLYLTRANSFERASE, GTASE

 Structural Features

(-) Chains, Units

  1234567
Asymmetric Unit : ABCDEFG
Biological Unit 1 (1x): A      
Biological Unit 2 (1x):  B     
Biological Unit 3 (1x):   C    
Biological Unit 4 (1x):    D   
Biological Unit 5 (1x):     E  
Biological Unit 6 (1x):       G
Biological Unit 7 (1x):      F 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric Unit (1, 5)
No.NameCountTypeFull Name
1SO45Ligand/IonSULFATE ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION
Biological Unit 5 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION
Biological Unit 6 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION
Biological Unit 7 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:272 , ARG A:452 , ALA A:538 , ASN A:540BINDING SITE FOR RESIDUE SO4 A 1
2AC2SOFTWAREGLN A:272 , ARG A:315 , ASN A:537 , ALA A:538 , THR A:541BINDING SITE FOR RESIDUE SO4 A 2
3AC3SOFTWAREGLY A:297 , THR A:298 , ARG A:299 , ARG A:315 , ARG A:530 , LYS A:533BINDING SITE FOR RESIDUE SO4 A 3
4AC4SOFTWAREASN B:537 , ALA B:538 , THR B:541BINDING SITE FOR RESIDUE SO4 B 4
5AC5SOFTWARELYS A:294 , ASP A:296 , ASP A:438 , LYS A:458 , LYS A:460BINDING SITE FOR RESIDUE SO4 A 5

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3S24)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3S24)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3S24)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3S24)

(-) Exons   (10, 70)

Asymmetric Unit (10, 70)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1bENST000003694851bENSE00001829011chr6:89673315-89673065251MCE1_HUMAN1-22220--
1.2ENST000003694852ENSE00000760359chr6:89650899-89650790110MCE1_HUMAN22-58370--
1.3ENST000003694853ENSE00000760358chr6:89638986-89638883104MCE1_HUMAN59-93350--
1.4ENST000003694854ENSE00000798181chr6:89638792-8963870489MCE1_HUMAN93-123310--
1.5ENST000003694855ENSE00000918695chr6:89616159-8961608476MCE1_HUMAN123-148260--
1.6ENST000003694856ENSE00000798180chr6:89614674-89614434241MCE1_HUMAN148-228810--
1.7ENST000003694857ENSE00000918694chr6:89601634-89601525110MCE1_HUMAN229-265377A:229-265
B:229-265
C:229-265
D:229-265
E:229-265
F:229-265
G:229-265		37
37
37
37
37
37
37
1.8ENST000003694858ENSE00000918693chr6:89600315-89600214102MCE1_HUMAN265-299357A:265-299
B:265-299
C:265-299
D:265-299
E:265-299
F:265-299
G:265-299		35
35
35
35
35
35
35
1.9ENST000003694859ENSE00000760356chr6:89563483-89563348136MCE1_HUMAN299-344467A:299-344
B:299-344
C:299-344
D:299-344
E:299-344
F:299-344
G:299-344		46
46
46
46
46
46
46
1.10ENST0000036948510ENSE00000760355chr6:89559545-8955947472MCE1_HUMAN345-368247A:345-368
B:345-368
C:345-368
D:345-368
E:345-368
F:345-368
G:345-368		24
24
24
24
24
24
24
1.11ENST0000036948511ENSE00000760354chr6:89554240-89554076165MCE1_HUMAN369-423557A:369-423
B:369-423
C:369-423
D:369-423
E:369-423
F:369-423
G:369-423		55
55
55
55
55
55
55
1.12ENST0000036948512ENSE00000760353chr6:89511351-8951128369MCE1_HUMAN424-446237A:424-446 (gaps)
B:424-446 (gaps)
C:424-446 (gaps)
D:424-446 (gaps)
E:424-446 (gaps)
F:424-446 (gaps)
G:424-446 (gaps)		23
23
23
23
23
23
23
1.13ENST0000036948513ENSE00000760352chr6:89479593-89479493101MCE1_HUMAN447-480347A:447-480
B:447-474
C:447-473
D:447-480
E:447-480
F:447-480
G:447-480		34
28
27
34
34
34
34
1.14aENST0000036948514aENSE00000760351chr6:89388138-8938807267MCE1_HUMAN480-502237A:480-502
B:486-502
C:487-502
D:480-502
E:480-502
F:480-502
G:480-502		23
17
16
23
23
23
23
1.15ENST0000036948515ENSE00000760350chr6:89324114-89323991124MCE1_HUMAN503-544427A:503-544
B:503-544
C:503-544
D:503-544
E:503-544
F:503-544
G:503-544		42
42
42
42
42
42
42
1.16bENST0000036948516bENSE00001823083chr6:89322601-893199852617MCE1_HUMAN544-597547A:544-564
B:544-564
C:544-564
D:544-564
E:544-567
F:544-565
G:544-566		21
21
21
21
24
22
23

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:328
 aligned with MCE1_HUMAN | O60942 from UniProtKB/Swiss-Prot  Length:597

    Alignment length:336
                                   238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558      
           MCE1_HUMAN   229 GAIFLEGVTVKGVTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYLIYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICTSRKLLEGNFAKEVSHEMDGLIFQPTGKYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEGLLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYNTAMAVCNSISNPVTKEMLFEFIDR 564
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............eee..hhhhhhhhhhhhhhhhh........eeeee....hhhhhhh..eeeeeee..eeeeeee.....eeeee....eeee.................eeeeeeeeeeee..eeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhh.............eeee...eehhhhhhhh.--------..eeeeeeee......eeeeeeeee.hhhh.eeeeeeeeeee.......eeeeeee........eee....hhhhh...eeeeeee..eeeeeee........hhhhhhhhhhhhhh..hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.7  PDB: A:229-265             ---------------------------------Exon 1.9  PDB: A:299-344 UniProt: 299-344     Exon 1.10  PDB: A:345-36Exon 1.11  PDB: A:369-423 UniProt: 369-423             Exon 1.12              Exon 1.13  PDB: A:447-480         ----------------------Exon 1.15  PDB: A:503-544 UniProt: 503-544-------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------Exon 1.8  PDB: A:265-299           ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.14a             -----------------------------------------Exon 1.16b            Transcript 1 (2)
                 3s24 A 229 GAIFLEGVTVKGVTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYLIYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICTSRKLLE--------HEMDGLIFQPTGKYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEGLLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYNTAMAVCNSISNPVTKEMLFEFIDR 564
                                   238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       | -      |438       448       458       468       478       488       498       508       518       528       538       548       558      
                                                                                                                                                                                                                               426      435                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:316
 aligned with MCE1_HUMAN | O60942 from UniProtKB/Swiss-Prot  Length:597

    Alignment length:336
                                   238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558      
           MCE1_HUMAN   229 GAIFLEGVTVKGVTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYLIYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICTSRKLLEGNFAKEVSHEMDGLIFQPTGKYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEGLLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYNTAMAVCNSISNPVTKEMLFEFIDR 564
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............ee...hhhhhhhhhhhhhhhh........eeeee.hhhhhhhhhh..eeee.....eeeeeee.....eeeee....eee..................eeeeeeeeeee....eeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeee...eehhhhhhhh---------.....eeeee......eeeeeeeee.......eeee....-----------.eeeee..eeeeeeee............eeeeeee..eeeeeee........hhhhhhhhhhhhh...hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.7  PDB: B:229-265             ---------------------------------Exon 1.9  PDB: B:299-344 UniProt: 299-344     Exon 1.10  PDB: B:345-36Exon 1.11  PDB: B:369-423 UniProt: 369-423             Exon 1.12              Exon 1.13  PDB: B:447-474         ----------------------Exon 1.15  PDB: B:503-544 UniProt: 503-544-------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------Exon 1.8  PDB: B:265-299           ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.14a [INCOMPLETE]-----------------------------------------Exon 1.16b            Transcript 1 (2)
                 3s24 B 229 GAIFLEGVTVKGVTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYLIYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICTSRKLL---------HEMDGLIFQPTGKYKPGRCDDILKWKPPSLNSVDFRLKIT-----------VGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYNTAMAVCNSISNPVTKEMLFEFIDR 564
                                   238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418      |  -      |438       448       458       468     |   -       488       498       508       518       528       538       548       558      
                                                                                                                                                                                                                              425       435                                    474         486                                                                              


Chain C from PDB  Type:PROTEIN  Length:314
 aligned with MCE1_HUMAN | O60942 from UniProtKB/Swiss-Prot  Length:597

    Alignment length:336
                                   238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558      
           MCE1_HUMAN   229 GAIFLEGVTVKGVTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYLIYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICTSRKLLEGNFAKEVSHEMDGLIFQPTGKYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEGLLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYNTAMAVCNSISNPVTKEMLFEFIDR 564
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............ee..hhhhhhhhhhhhhhhhh........eeeee...hhhhhhhh..eeeeee...eeeeeee.....eeee.....eee..................eeeeeeeeeeee..eeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeee...ee..hhhhhh---------....eeeeee......eeeeeeeee.hhhh.eeeeeee.-------------.eeee..eeeeeee.............eeeeeee..eeeeeee........hhhhhhhhhhhhh...hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.7  PDB: C:229-265             ---------------------------------Exon 1.9  PDB: C:299-344 UniProt: 299-344     Exon 1.10  PDB: C:345-36Exon 1.11  PDB: C:369-423 UniProt: 369-423             Exon 1.12              Exon 1.13  PDB: C:447-473         ----------------------Exon 1.15  PDB: C:503-544 UniProt: 503-544-------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------Exon 1.8  PDB: C:265-299           ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.14a [INCOMPLETE]-----------------------------------------Exon 1.16b            Transcript 1 (2)
                 3s24 C 229 GAIFLEGVTVKGVTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYLIYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICTSRKLL---------HEMDGLIFQPTGKYKPGRCDDILKWKPPSLNSVDFRLKI-------------GLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYNTAMAVCNSISNPVTKEMLFEFIDR 564
                                   238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418      |  -      |438       448       458       468    |    -       488       498       508       518       528       538       548       558      
                                                                                                                                                                                                                              425       435                                   473           487                                                                             


Chain D from PDB  Type:PROTEIN  Length:328
 aligned with MCE1_HUMAN | O60942 from UniProtKB/Swiss-Prot  Length:597

    Alignment length:336
                                   238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558      
           MCE1_HUMAN   229 GAIFLEGVTVKGVTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYLIYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICTSRKLLEGNFAKEVSHEMDGLIFQPTGKYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEGLLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYNTAMAVCNSISNPVTKEMLFEFIDR 564
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............ee.....hhhhhhhhhhhhhh........eeeee...hhhhhhhh..eeee.....eeeeeee.....eeeee....eee..................eeeeeeeee........eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh..eeee...ee..hhhhhhh--------.....eeeee......eeeeeeeee......eeeeeeeeeee.......eeeeeee........eeee...hhhhhh..eeeeee....eeeeeee.......hhhhhhhhhhhhh...hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.7  PDB: D:229-265             ---------------------------------Exon 1.9  PDB: D:299-344 UniProt: 299-344     Exon 1.10  PDB: D:345-36Exon 1.11  PDB: D:369-423 UniProt: 369-423             Exon 1.12              Exon 1.13  PDB: D:447-480         ----------------------Exon 1.15  PDB: D:503-544 UniProt: 503-544-------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------Exon 1.8  PDB: D:265-299           ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.14a             -----------------------------------------Exon 1.16b            Transcript 1 (2)
                 3s24 D 229 GAIFLEGVTVKGVTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYLIYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICTSRKLLE--------HEMDGLIFQPTGKYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEGLLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYNTAMAVCNSISNPVTKEMLFEFIDR 564
                                   238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       | -      |438       448       458       468       478       488       498       508       518       528       538       548       558      
                                                                                                                                                                                                                               426      435                                                                                                                                 


Chain E from PDB  Type:PROTEIN  Length:329
 aligned with MCE1_HUMAN | O60942 from UniProtKB/Swiss-Prot  Length:597

    Alignment length:339
                                   238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558         
           MCE1_HUMAN   229 GAIFLEGVTVKGVTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYLIYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICTSRKLLEGNFAKEVSHEMDGLIFQPTGKYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEGLLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYNTAMAVCNSISNPVTKEMLFEFIDRCTA 567
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............ee..hhhhhhhhhhhhhhhhh........eeeee...hhhhhhhh..eeeeee...eeeeeee......eee.....eee..................eeeeeeeeeee....eeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh..eeee...ee.hhh....----------...eeeeee......eeeeeeeee.hhhh.eeeeeeeee...........eeeee........eee.....hhhhh..eeeeee....eeeeee........hhhhhhhhhhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.7  PDB: E:229-265             ---------------------------------Exon 1.9  PDB: E:299-344 UniProt: 299-344     Exon 1.10  PDB: E:345-36Exon 1.11  PDB: E:369-423 UniProt: 369-423             Exon 1.12              Exon 1.13  PDB: E:447-480         ----------------------Exon 1.15  PDB: E:503-544 UniProt: 503-544----------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------Exon 1.8  PDB: E:265-299           ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.14a             -----------------------------------------Exon 1.16b [INCOMPLETE]  Transcript 1 (2)
                 3s24 E 229 GAIFLEGVTVKGVTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYLIYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICTSRKLL----------EMDGLIFQPTGKYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEGLLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYNTAMAVCNSISNPVTKEMLFEFIDRCTA 567
                                   238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418      |  -       438       448       458       468       478       488       498       508       518       528       538       548       558         
                                                                                                                                                                                                                              425        436                                                                                                                                   


Chain F from PDB  Type:PROTEIN  Length:333
 aligned with MCE1_HUMAN | O60942 from UniProtKB/Swiss-Prot  Length:597

    Alignment length:337
                                   238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       
           MCE1_HUMAN   229 GAIFLEGVTVKGVTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYLIYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICTSRKLLEGNFAKEVSHEMDGLIFQPTGKYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEGLLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYNTAMAVCNSISNPVTKEMLFEFIDRC 565
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............ee..hhhhhhhhhhhhhhhhh.........eeee...hhhhhhhhh.eeee.....eeeeeee.....eeeee....eee..................eeeeeeeeeeee..eeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh..eeee...eehhhhhhh.----..........eeeee.......eeeeeeee.hhhh.eeeeeeee............eeeee........eeee.hhhhhhhh..eeeeee....eeeeee........hhhhhhhhhhhhhh..hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.7  PDB: F:229-265             ---------------------------------Exon 1.9  PDB: F:299-344 UniProt: 299-344     Exon 1.10  PDB: F:345-36Exon 1.11  PDB: F:369-423 UniProt: 369-423             Exon 1.12              Exon 1.13  PDB: F:447-480         ----------------------Exon 1.15  PDB: F:503-544 UniProt: 503-544--------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------Exon 1.8  PDB: F:265-299           ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.14a             -----------------------------------------Exon 1.16b             Transcript 1 (2)
                 3s24 F 229 GAIFLEGVTVKGVTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYLIYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICTSRKLL----AKEVSHEMDGLIFQPTGKYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEGLLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYNTAMAVCNSISNPVTKEMLFEFIDRC 565
                                   238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418      |  - |     438       448       458       468       478       488       498       508       518       528       538       548       558       
                                                                                                                                                                                                                              425  430                                                                                                                                       


Chain G from PDB  Type:PROTEIN  Length:329
 aligned with MCE1_HUMAN | O60942 from UniProtKB/Swiss-Prot  Length:597

    Alignment length:338
                                   238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558        
           MCE1_HUMAN   229 GAIFLEGVTVKGVTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYLIYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICTSRKLLEGNFAKEVSHEMDGLIFQPTGKYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEGLLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYNTAMAVCNSISNPVTKEMLFEFIDRCT 566
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------------------------------------------mRNA_cap_enzyme-3s24G01 G:272-460                                                                                                                                                            --mRNA_cap_C-3s24G08 G:463-560                                                                      ------ Pfam domains (1)
           Pfam domains (2) -------------------------------------------mRNA_cap_enzyme-3s24G02 G:272-460                                                                                                                                                            --mRNA_cap_C-3s24G09 G:463-560                                                                      ------ Pfam domains (2)
           Pfam domains (3) -------------------------------------------mRNA_cap_enzyme-3s24G03 G:272-460                                                                                                                                                            --mRNA_cap_C-3s24G10 G:463-560                                                                      ------ Pfam domains (3)
           Pfam domains (4) -------------------------------------------mRNA_cap_enzyme-3s24G04 G:272-460                                                                                                                                                            --mRNA_cap_C-3s24G11 G:463-560                                                                      ------ Pfam domains (4)
           Pfam domains (5) -------------------------------------------mRNA_cap_enzyme-3s24G05 G:272-460                                                                                                                                                            --mRNA_cap_C-3s24G12 G:463-560                                                                      ------ Pfam domains (5)
           Pfam domains (6) -------------------------------------------mRNA_cap_enzyme-3s24G06 G:272-460                                                                                                                                                            --mRNA_cap_C-3s24G13 G:463-560                                                                      ------ Pfam domains (6)
           Pfam domains (7) -------------------------------------------mRNA_cap_enzyme-3s24G07 G:272-460                                                                                                                                                            --mRNA_cap_C-3s24G14 G:463-560                                                                      ------ Pfam domains (7)
         Sec.struct. author .............ee...hhhhhhhhhhhhhhhh........eeeee...hhhhhhhh..eeeeee...eeeeeee.....eeeee....eee..................eeeeeeeeee......eeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeee...ee........---------....eeeeee......eeeeeeeee.hhhh.eeeeeeee.............eeee........eee............eeeeeee..eeeeeee........hhhhhhhhhhhhhh..hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.7  PDB: G:229-265             ---------------------------------Exon 1.9  PDB: G:299-344 UniProt: 299-344     Exon 1.10  PDB: G:345-36Exon 1.11  PDB: G:369-423 UniProt: 369-423             Exon 1.12              Exon 1.13  PDB: G:447-480         ----------------------Exon 1.15  PDB: G:503-544 UniProt: 503-544---------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------Exon 1.8  PDB: G:265-299           ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.14a             -----------------------------------------Exon 1.16b [INCOMPLETE] Transcript 1 (2)
                 3s24 G 229 GAIFLEGVTVKGVTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRVNGQAVPRYLIYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRNKPFFDICTSRKLL---------HEMDGLIFQPTGKYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEGLLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYNTAMAVCNSISNPVTKEMLFEFIDRCT 566
                                   238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418      |  -      |438       448       458       468       478       488       498       508       518       528       538       548       558        
                                                                                                                                                                                                                              425       435
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3S24)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3S24)

(-) Pfam Domains  (2, 14)

Asymmetric Unit
(-)
Clan: DNA_ligase (17)
(-)
Clan: OB (224)

(-) Gene Ontology  (25, 25)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G   (MCE1_HUMAN | O60942)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0008192    RNA guanylyltransferase activity    Catalysis of the posttranscriptional addition of a guanyl residue to the 5' end of an RNA molecule.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0004484    mRNA guanylyltransferase activity    Catalysis of the reaction: GTP + (5')pp-Pur-mRNA = diphosphate + G(5')ppp-Pur-mRNA; G(5')ppp-Pur-mRNA is mRNA containing a guanosine residue linked 5' through three phosphates to the 5' position of the terminal residue.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0016791    phosphatase activity    Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
    GO:0004651    polynucleotide 5'-phosphatase activity    Catalysis of the reaction: 5'-phosphopolynucleotide + H2O = polynucleotide + phosphate.
    GO:0004725    protein tyrosine phosphatase activity    Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
    GO:0008138    protein tyrosine/serine/threonine phosphatase activity    Catalysis of the reactions: protein serine + H2O = protein serine + phosphate; protein threonine phosphate + H2O = protein threonine + phosphate; and protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0050355    triphosphatase activity    Catalysis of the reaction: H(2)O + triphosphate = diphosphate + phosphate.
biological process
    GO:0006370    7-methylguanosine mRNA capping    Addition of the 7-methylguanosine cap to the 5' end of a nascent messenger RNA transcript.
    GO:0006396    RNA processing    Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
    GO:0006397    mRNA processing    Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0035335    peptidyl-tyrosine dephosphorylation    The removal of phosphoric residues from peptidyl-O-phospho-tyrosine to form peptidyl-tyrosine.
    GO:0098507    polynucleotide 5' dephosphorylation    The process of removing one or more phosphate groups from the 5' end of a polynucleotide.
    GO:0006470    protein dephosphorylation    The process of removing one or more phosphoric residues from a protein.
    GO:0006366    transcription from RNA polymerase II promoter    The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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  2.7.7.50
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MCE1_HUMAN | O60942: 2c46

(-) Related Entries Specified in the PDB File

1ckm 1ckn 1cko 1p16 2c46