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(-) Description

Title :  STRUCTURE OF HCRF IN COMPLEX WITH GANGLIOSIDE GD1A
 
Authors :  Z. Fu, M. A. Benson, J. T. Barbieri, J-J. P. Kim, M. R. Baldwin
Date :  02 May 11  (Deposition) - 17 Aug 11  (Release) - 12 Oct 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Clostridium Botulinum Type F, Ganglioside Binding Site, Gd1A, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Benson, Z. Fu, J. J. Kim, M. R. Baldwin
Unique Ganglioside Recognition Strategies For Clostridial Neurotoxins.
J. Biol. Chem. V. 286 34015 2011
PubMed-ID: 21849494  |  Reference-DOI: 10.1074/JBC.M111.272054

(-) Compounds

Molecule 1 - BONT/F
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PET-28
    Fragment: RECEPTOR BINDING DOMAIN (UNP RESIDUES 866-1276)
    Gene: BONT/F, BOTULINUM NEUROTOXIN
    Organism Scientific: CLOSTRIDIUM BOTULINUM
    Organism Taxid: 1491
    Synonym: BOTULINUM NEUROTOXIN TYPE F, NEUROTOXIN TYPE F

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric Unit (3, 15)
No.NameCountTypeFull Name
1GAL6Ligand/IonBETA-D-GALACTOSE
2NGA4Ligand/IonN-ACETYL-D-GALACTOSAMINE
3SIA5Ligand/IonO-SIALIC ACID
Biological Unit 1 (3, 3)
No.NameCountTypeFull Name
1GAL1Ligand/IonBETA-D-GALACTOSE
2NGA1Ligand/IonN-ACETYL-D-GALACTOSAMINE
3SIA1Ligand/IonO-SIALIC ACID
Biological Unit 2 (3, 5)
No.NameCountTypeFull Name
1GAL2Ligand/IonBETA-D-GALACTOSE
2NGA1Ligand/IonN-ACETYL-D-GALACTOSAMINE
3SIA2Ligand/IonO-SIALIC ACID
Biological Unit 3 (3, 4)
No.NameCountTypeFull Name
1GAL2Ligand/IonBETA-D-GALACTOSE
2NGA1Ligand/IonN-ACETYL-D-GALACTOSAMINE
3SIA1Ligand/IonO-SIALIC ACID
Biological Unit 4 (3, 3)
No.NameCountTypeFull Name
1GAL1Ligand/IonBETA-D-GALACTOSE
2NGA1Ligand/IonN-ACETYL-D-GALACTOSAMINE
3SIA1Ligand/IonO-SIALIC ACID

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGAL A:4 , PRO A:1194 , GLU A:1195 , HIS A:1241 , TRP A:1250BINDING SITE FOR RESIDUE NGA A 3
02AC2SOFTWARENGA A:3 , SIA A:5 , GLU A:1195 , PHE A:1240 , HIS A:1241 , SER A:1248 , TRP A:1250BINDING SITE FOR RESIDUE GAL A 4
03AC3SOFTWAREGAL A:4 , HOH A:126 , LEU A:1110 , TRP A:1250 , ARG A:1256BINDING SITE FOR RESIDUE SIA A 5
04AC4SOFTWARENGA B:3 , SIA B:6BINDING SITE FOR RESIDUE GAL B 2
05AC5SOFTWAREGAL B:2 , GAL B:4 , SIA B:6 , PRO B:1194 , GLU B:1195 , HIS B:1241 , TRP B:1250BINDING SITE FOR RESIDUE NGA B 3
06AC6SOFTWARENGA B:3 , SIA B:5 , GLU B:1195 , PHE B:1240 , HIS B:1241 , SER B:1248 , TRP B:1250BINDING SITE FOR RESIDUE GAL B 4
07AC7SOFTWAREGAL B:4 , HOH B:32 , HOH B:68 , LEU B:1110 , ARG B:1111 , PHE B:1240 , TRP B:1250 , ARG B:1256BINDING SITE FOR RESIDUE SIA B 5
08AC8SOFTWAREGAL B:2 , NGA B:3BINDING SITE FOR RESIDUE SIA B 6
09AC9SOFTWARENGA C:3 , HOH C:423 , HOH C:424BINDING SITE FOR RESIDUE GAL C 2
10BC1SOFTWAREGAL C:2 , GAL C:4 , PRO C:1194 , GLU C:1195 , HIS C:1241 , TRP C:1250BINDING SITE FOR RESIDUE NGA C 3
11BC2SOFTWARENGA C:3 , SIA C:5 , GLU C:1195 , PHE C:1240 , HIS C:1241 , SER C:1248 , TRP C:1250BINDING SITE FOR RESIDUE GAL C 4
12BC3SOFTWAREGAL C:4 , HOH C:270 , LEU C:1110 , ARG C:1111 , PHE C:1240 , ARG C:1256BINDING SITE FOR RESIDUE SIA C 5
13BC4SOFTWAREGAL D:4 , SIA D:5 , PRO D:1194 , GLU D:1195 , HIS D:1241BINDING SITE FOR RESIDUE NGA D 3
14BC5SOFTWARENGA D:3 , SIA D:5 , GLU D:1195 , PHE D:1240 , HIS D:1241 , SER D:1248 , TRP D:1250 , TYR D:1251BINDING SITE FOR RESIDUE GAL D 4
15BC6SOFTWARENGA D:3 , GAL D:4 , LEU D:1110 , TRP D:1250 , ARG D:1256BINDING SITE FOR RESIDUE SIA D 5

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3RSJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3RSJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RSJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3RSJ)

(-) Exons   (0, 0)

(no "Exon" information available for 3RSJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:406
 aligned with Q57236_CLOBO | Q57236 from UniProtKB/TrEMBL  Length:1278

    Alignment length:413
                                   875       885       895       905       915       925       935       945       955       965       975       985       995      1005      1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175      1185      1195      1205      1215      1225      1235      1245      1255      1265      1275   
        Q57236_CLOBO    866 IKDNSILDMRYENNKFIDISGYGSNISINGDVYIYSTNRNQFGIYSSKPSEVNIAQNNDIIYNGRYQNFSISFWVRIPKYFNKVNLNNEYTIIDCIRNNNSGWKISLNYNKIIWTLQDTAGNNQKLVFNYTQMISISDYINKWIFVTITNNRLGNSRIYINGNLIDEKSISNLGDIHVSDNILFKIVGCNDTRYVGIRYFKVFDTELGKTEIETLYSDEPDPSILKDFWGNYLLYNKRYYLLNLLRTDKSITQNSNFLNINQQRGVYQKPNIFSNTRLYTGVEVIIRKNGSTDISNTDNFVRKNDLAYINVVDRDVEYRLYADISIAKPEKIIKLIRTSNSNNSLGQIIVMDSIGNNCTMNFQNNNGGNIGLLGFHSNNLVASSWYYNNIRKNTSSNGCFWSFISKEHGWQEN 1278
               SCOP domains d3rsja1 A:866-1085 automated matches                                                                                                                                                                                        d3rsja2 A:1086-1278 automated matches                                                                                                                                                             SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhh.eeeeeee....eee......eeeeee..ee......eeeee....eeeeee.............eeeeeeee.....hhhhh...eeeeeeee...eeeeeeee..eeeeeee.....eeeeeee.............eeeeeeee....eeeeee..eeeeeee...........eeeeeee......eeeeeeeeee....hhhhhhhhhhhh..................eeeeee.....eeeee....eeeeee..eeee...eeee......eeeeee..-----..........eeeeeeee..eeeeeee.......eeeeeeee.--......eeeeeeee..eeeeeeee....eeeeeee....eeee.hhhhh...........eeee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3rsj A  866 IKDNSILDMRYENNKFIDISGYGSNISINGDVYIYSTNRNQFGIYSSKPSEVNIAQNNDIIYNGRYQNFSISFWVRIPKYFNKVNLNNEYTIIDCIRNNNSGWKISLNYNKIIWTLQDTAGNNQKLVFNYTQMISISDYINKWIFVTITNNRLGNSRIYINGNLIDEKSISNLGDIHVSDNILFKIVGCNDTRYVGIRYFKVFDTELGKTEIETLYSDEPDPSILKDFWGNYLLYNKRYYLLNLLRTDKSITQNSNFLNINQQRGVYQKPNIFSNTRLYTGVEVIIRKNG-----NTDNFVRKNDLAYINVVDRDVEYRLYADISIAKPEKIIKLIRT--SNNSLGQIIVMDSIGNNCTMNFQNNNGGNIGLLGFHSNNLVASSWYYNNIRKNTSSNGCFWSFISKEHGWQEN 1278
                                   875       885       895       905       915       925       935       945       955       965       975       985       995      1005      1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155     |1165      1175      1185      1195       | -|     1215      1225      1235      1245      1255      1265      1275   
                                                                                                                                                                                                                                                                                                                          1155  1161                                      1203  |                                                                        
                                                                                                                                                                                                                                                                                                                                                                             1206                                                                        


Chain B from PDB  Type:PROTEIN  Length:402
 aligned with Q57236_CLOBO | Q57236 from UniProtKB/TrEMBL  Length:1278

    Alignment length:411
                                   877       887       897       907       917       927       937       947       957       967       977       987       997      1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147      1157      1167      1177      1187      1197      1207      1217      1227      1237      1247      1257      1267      1277 
        Q57236_CLOBO    868 DNSILDMRYENNKFIDISGYGSNISINGDVYIYSTNRNQFGIYSSKPSEVNIAQNNDIIYNGRYQNFSISFWVRIPKYFNKVNLNNEYTIIDCIRNNNSGWKISLNYNKIIWTLQDTAGNNQKLVFNYTQMISISDYINKWIFVTITNNRLGNSRIYINGNLIDEKSISNLGDIHVSDNILFKIVGCNDTRYVGIRYFKVFDTELGKTEIETLYSDEPDPSILKDFWGNYLLYNKRYYLLNLLRTDKSITQNSNFLNINQQRGVYQKPNIFSNTRLYTGVEVIIRKNGSTDISNTDNFVRKNDLAYINVVDRDVEYRLYADISIAKPEKIIKLIRTSNSNNSLGQIIVMDSIGNNCTMNFQNNNGGNIGLLGFHSNNLVASSWYYNNIRKNTSSNGCFWSFISKEHGWQEN 1278
               SCOP domains d3rsjb1 B:868-1085 automated matches                                                                                                                                                                                      d3rsjb2 B:1086-1278 automated matches                                                                                                                                                             SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee..eeee......eeeeee.eee.......eeee....eeeeee.............eeeeeeee.....hhhhh...eeeeeee.....eeeeeee..eeeeeee.....eeeeeee.............eeeeeeee....eeeeee..eeeeeee...........eeeeeee......eeeeeeeeee....hhhhhhhhhhhh..................eeeeee.....eeeee....eeeeee..eeee...eeee......eeeeee.------..........eeeeeeee..eeeeeee.......eeeeeeee.---.....eeeeeeee..eeeeeeee....eeeeeee....eeee.hhh.............eeee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3rsj B  868 DNSILDMRYENNKFIDISGYGSNISINGDVYIYSTNRNQFGIYSSKPSEVNIAQNNDIIYNGRYQNFSISFWVRIPKYFNKVNLNNEYTIIDCIRNNNSGWKISLNYNKIIWTLQDTAGNNQKLVFNYTQMISISDYINKWIFVTITNNRLGNSRIYINGNLIDEKSISNLGDIHVSDNILFKIVGCNDTRYVGIRYFKVFDTELGKTEIETLYSDEPDPSILKDFWGNYLLYNKRYYLLNLLRTDKSITQNSNFLNINQQRGVYQKPNIFSNTRLYTGVEVIIRKN------NTDNFVRKNDLAYINVVDRDVEYRLYADISIAKPEKIIKLIRT---NNSLGQIIVMDSIGNNCTMNFQNNNGGNIGLLGFHSNNLVASSWYYNNIRKNTSSNGCFWSFISKEHGWQEN 1278
                                   877       887       897       907       917       927       937       947       957       967       977       987       997      1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147      |  -   |  1167      1177      1187      1197     |1207      1217      1227      1237      1247      1257      1267      1277 
                                                                                                                                                                                                                                                                                                                       1154   1161                                      1203   |                                                                       
                                                                                                                                                                                                                                                                                                                                                                            1207                                                                       


Chain C from PDB  Type:PROTEIN  Length:402
 aligned with Q57236_CLOBO | Q57236 from UniProtKB/TrEMBL  Length:1278

    Alignment length:411
                                   877       887       897       907       917       927       937       947       957       967       977       987       997      1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147      1157      1167      1177      1187      1197      1207      1217      1227      1237      1247      1257      1267      1277 
        Q57236_CLOBO    868 DNSILDMRYENNKFIDISGYGSNISINGDVYIYSTNRNQFGIYSSKPSEVNIAQNNDIIYNGRYQNFSISFWVRIPKYFNKVNLNNEYTIIDCIRNNNSGWKISLNYNKIIWTLQDTAGNNQKLVFNYTQMISISDYINKWIFVTITNNRLGNSRIYINGNLIDEKSISNLGDIHVSDNILFKIVGCNDTRYVGIRYFKVFDTELGKTEIETLYSDEPDPSILKDFWGNYLLYNKRYYLLNLLRTDKSITQNSNFLNINQQRGVYQKPNIFSNTRLYTGVEVIIRKNGSTDISNTDNFVRKNDLAYINVVDRDVEYRLYADISIAKPEKIIKLIRTSNSNNSLGQIIVMDSIGNNCTMNFQNNNGGNIGLLGFHSNNLVASSWYYNNIRKNTSSNGCFWSFISKEHGWQEN 1278
               SCOP domains d3rsjc1 C:868-1085 automated matches                                                                                                                                                                                      d3rsjc2 C:1086-1278 automated matches                                                                                                                                                             SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....eee......eeeeee..ee.......eeee....eeeeee.............eeeeeeee.....hhhhh...eeeeeee.....eeeeeee..eeeeeee.....eeeeeee.............eeeeeeee....eeeeee..eeeeeee...........eeeeeee......eeeeeeeeee....hhhhhhhhhhhh..................eeeeee.....eeeee....eeeeee..eeee...eeee......eeeeee.------.........eeeeeeeee..eeeeeee.......eeeeeeee.---.....eeeeeeee..eeeeeeee....eeeeeee....eeee.hhhhh...........eeee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3rsj C  868 DNSILDMRYENNKFIDISGYGSNISINGDVYIYSTNRNQFGIYSSKPSEVNIAQNNDIIYNGRYQNFSISFWVRIPKYFNKVNLNNEYTIIDCIRNNNSGWKISLNYNKIIWTLQDTAGNNQKLVFNYTQMISISDYINKWIFVTITNNRLGNSRIYINGNLIDEKSISNLGDIHVSDNILFKIVGCNDTRYVGIRYFKVFDTELGKTEIETLYSDEPDPSILKDFWGNYLLYNKRYYLLNLLRTDKSITQNSNFLNINQQRGVYQKPNIFSNTRLYTGVEVIIRKN------NTDNFVRKNDLAYINVVDRDVEYRLYADISIAKPEKIIKLIRT---NNSLGQIIVMDSIGNNCTMNFQNNNGGNIGLLGFHSNNLVASSWYYNNIRKNTSSNGCFWSFISKEHGWQEN 1278
                                   877       887       897       907       917       927       937       947       957       967       977       987       997      1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147      |  -   |  1167      1177      1187      1197     |1207      1217      1227      1237      1247      1257      1267      1277 
                                                                                                                                                                                                                                                                                                                       1154   1161                                      1203   |                                                                       
                                                                                                                                                                                                                                                                                                                                                                            1207                                                                       


Chain D from PDB  Type:PROTEIN  Length:404
 aligned with Q57236_CLOBO | Q57236 from UniProtKB/TrEMBL  Length:1278

    Alignment length:413
                                   875       885       895       905       915       925       935       945       955       965       975       985       995      1005      1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175      1185      1195      1205      1215      1225      1235      1245      1255      1265      1275   
        Q57236_CLOBO    866 IKDNSILDMRYENNKFIDISGYGSNISINGDVYIYSTNRNQFGIYSSKPSEVNIAQNNDIIYNGRYQNFSISFWVRIPKYFNKVNLNNEYTIIDCIRNNNSGWKISLNYNKIIWTLQDTAGNNQKLVFNYTQMISISDYINKWIFVTITNNRLGNSRIYINGNLIDEKSISNLGDIHVSDNILFKIVGCNDTRYVGIRYFKVFDTELGKTEIETLYSDEPDPSILKDFWGNYLLYNKRYYLLNLLRTDKSITQNSNFLNINQQRGVYQKPNIFSNTRLYTGVEVIIRKNGSTDISNTDNFVRKNDLAYINVVDRDVEYRLYADISIAKPEKIIKLIRTSNSNNSLGQIIVMDSIGNNCTMNFQNNNGGNIGLLGFHSNNLVASSWYYNNIRKNTSSNGCFWSFISKEHGWQEN 1278
               SCOP domains d3rsjd1 D:866-1085 automated matches                                                                                                                                                                                        d3rsjd2 D:1086-1278 automated matches                                                                                                                                                             SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhh.eeeeeeee..eeee......eeeeee..ee......eeeee....eeeeee.............eeeeeeee.....hhhhh...eeeeeee.....eeeeeee..eeeeeee.....eeeeeee.............eeeeeeee....eeeeee..eeeeeee...........eeeeeee......eeeeeeeeee....hhhhhhhhhhhh..................eeeeee.....eeeee....eeeeee..eeee...eeee......eeeeee.------..........eeeeeeee..eeeeeee.......eeeeeeee.---.....eeeeeeee..eeeeeeee....eeeeeee....eeee.hhhhh...........eeee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3rsj D  866 IKDNSILDMRYENNKFIDISGYGSNISINGDVYIYSTNRNQFGIYSSKPSEVNIAQNNDIIYNGRYQNFSISFWVRIPKYFNKVNLNNEYTIIDCIRNNNSGWKISLNYNKIIWTLQDTAGNNQKLVFNYTQMISISDYINKWIFVTITNNRLGNSRIYINGNLIDEKSISNLGDIHVSDNILFKIVGCNDTRYVGIRYFKVFDTELGKTEIETLYSDEPDPSILKDFWGNYLLYNKRYYLLNLLRTDKSITQNSNFLNINQQRGVYQKPNIFSNTRLYTGVEVIIRKN------NTDNFVRKNDLAYINVVDRDVEYRLYADISIAKPEKIIKLIRT---NNSLGQIIVMDSIGNNCTMNFQNNNGGNIGLLGFHSNNLVASSWYYNNIRKNTSSNGCFWSFISKEHGWQEN 1278
                                   875       885       895       905       915       925       935       945       955       965       975       985       995      1005      1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145        |-     |1165      1175      1185      1195       | - |    1215      1225      1235      1245      1255      1265      1275   
                                                                                                                                                                                                                                                                                                                         1154   1161                                      1203   |                                                                       
                                                                                                                                                                                                                                                                                                                                                                              1207
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RSJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3RSJ)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q57236_CLOBO | Q57236)
molecular function
    GO:0004222    metalloendopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0051609    inhibition of neurotransmitter uptake    Any process that prevents the activation of the directed movement of a neurotransmitter into a cell.
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        Q57236_CLOBO | Q57236: 3fie 3fii
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(-) Related Entries Specified in the PDB File

3fuq APO FORM OF HCRF