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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   THE CRYSTAL STRUCTURE OF THE SUBUNIT BINDING OF HUMAN DIHYDROLIPOAMIDE TRANSACYLASE (E2B) BOUND TO HUMAN DIHYDROLIPOAMIDE DEHYDROGENASE (E3)

Authors :   C. A. Brautigam, R. M. Wynn, J. C. Chuang, B. B. Young, D. T. Chuang

Date :   22 Apr 11 (Deposition) - 04 May 11 (Release) - 20 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,E  (1x)
Biol. Unit 2: C,D,F  (1x)

Keywords :   Protein-Protein Interaction, Redox Protein, Mitochondrion, Oxidoreductase-Protein Binding Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. A. Brautigam, R. M. Wynn, J. L. Chuang, M. T. Naik, B. B. Young, T. H. Huang, D. T. Chuang
Structural And Thermodynamic Basis For Weak Interactions Between Dihydrolipoamide Dehydrogenase And Subunit-Binding Domain Of The Branched-Chain {Alpha}-Ketoacid Dehydrogenase Complex.
J. Biol. Chem. V. 286 23476 2011
PubMed-ID: 21543315 | Reference-DOI: 10.1074/JBC.M110.202960

Molecule 1 - DIHYDROLIPOYL DEHYDROGENASE, MITOCHONDRIAL
	Chains	:	A, B, C, D
	EC Number	:	1.8.1.4
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	RESIDUES 36-509
	Gene	:	DLD, GCSL, LAD, PHE3
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	DIHYDROLIPOAMIDE DEHYDROGENASE, GLYCINE CLEAVAGE SYSTEM L PROTEIN

Molecule 2 - LIPOAMIDE ACYLTRANSFERASE COMPONENT OF BRANCHED-CHAIN ALPHA-KETO ACID DEHYDROGENASE COMPLEX, MITOCHONDRIAL
	Chains	:	E, F
	EC Number	:	2.3.1.168
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	SUBUNIT-BINDING DOMAIN, RESIDUES 165-213
	Gene	:	DBT, BCATE2
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	BRANCHED-CHAIN ALPHA-KETO ACID DEHYDROGENASE COMPLEX COMPONENT E2, BCKAD-E2, BCKADE2, DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF BRANCHED-CHAIN ALPHA-KETO ACID DEHYDROGENASE COMPLEX, DIHYDROLIPOAMIDE BRANCHED CHAIN TRANSACYLASE, DIHYDROLIPOYLLYSINE- RESIDUE (2-METHYLPROPANOYL)TRANSFERASE

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A	B			E
Biological Unit 2 (1x)	:			C	D		F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 12)

No.	Name	Count	Type	Full Name
1	BME	4	Ligand/Ion	BETA-MERCAPTOETHANOL
2	FAD	4	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	NHE	4	Ligand/Ion	2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID

Biological Unit 1 (3, 6)

No.	Name	Count	Type	Full Name
1	BME	2	Ligand/Ion	BETA-MERCAPTOETHANOL
2	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	NHE	2	Ligand/Ion	2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID

Biological Unit 2 (3, 6)

No.	Name	Count	Type	Full Name
1	BME	2	Ligand/Ion	BETA-MERCAPTOETHANOL
2	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	NHE	2	Ligand/Ion	2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:168 , ILE A:189 , CYS A:277 , ARG A:280 , FAD A:480 , HOH A:563	BINDING SITE FOR RESIDUE BME A 500
02	AC2	SOFTWARE	ILE A:12 , GLY A:13 , GLY A:15 , PRO A:16 , GLY A:17 , GLU A:36 , LYS A:37 , ASN A:38 , GLY A:43 , THR A:44 , CYS A:45 , VAL A:48 , GLY A:49 , CYS A:50 , LYS A:54 , GLY A:117 , TYR A:118 , GLY A:119 , ALA A:147 , THR A:148 , GLY A:149 , SER A:150 , ILE A:189 , ARG A:280 , PHE A:283 , GLY A:319 , ASP A:320 , MET A:326 , LEU A:327 , ALA A:328 , HIS A:329 , TYR A:359 , HOH A:476 , HOH A:478 , HOH A:489 , BME A:500 , HOH A:535 , HOH A:547 , HIS B:452	BINDING SITE FOR RESIDUE FAD A 480
03	AC3	SOFTWARE	ASN A:225 , GLY A:402 , HOH A:536	BINDING SITE FOR RESIDUE NHE A 475
04	AC4	SOFTWARE	SER B:168 , CYS B:277 , ARG B:280 , FAD B:480	BINDING SITE FOR RESIDUE BME B 500
05	AC5	SOFTWARE	HIS A:452 , PRO A:453 , ILE B:12 , GLY B:13 , GLY B:15 , PRO B:16 , GLY B:17 , ILE B:35 , GLU B:36 , LYS B:37 , ASN B:38 , GLY B:43 , THR B:44 , CYS B:45 , VAL B:48 , GLY B:49 , CYS B:50 , LYS B:54 , TYR B:118 , GLY B:119 , ALA B:147 , THR B:148 , GLY B:149 , SER B:150 , ARG B:280 , PHE B:283 , LEU B:287 , GLY B:319 , ASP B:320 , MET B:326 , LEU B:327 , ALA B:328 , HIS B:329 , ALA B:331 , TYR B:359 , BME B:500 , HOH B:505	BINDING SITE FOR RESIDUE FAD B 480
06	AC6	SOFTWARE	ASN B:225 , GLY B:402 , MET B:403 , PHE B:474	BINDING SITE FOR RESIDUE NHE B 475
07	AC7	SOFTWARE	ILE C:189 , CYS C:277 , GLY C:279 , HOH C:503 , HOH C:527 , HIS E:160	BINDING SITE FOR RESIDUE BME C 500
08	AC8	SOFTWARE	ILE C:12 , GLY C:13 , GLY C:15 , PRO C:16 , GLY C:17 , GLU C:36 , LYS C:37 , ASN C:38 , GLY C:43 , THR C:44 , CYS C:45 , VAL C:48 , GLY C:49 , CYS C:50 , LYS C:54 , GLY C:117 , TYR C:118 , GLY C:119 , ALA C:147 , THR C:148 , GLY C:149 , SER C:150 , SER C:168 , ILE C:189 , ARG C:280 , PHE C:283 , GLY C:319 , ASP C:320 , MET C:326 , LEU C:327 , ALA C:328 , HIS C:329 , ALA C:331 , TYR C:359 , HOH C:476 , HOH C:491 , HOH C:496 , HOH C:504 , HIS D:452	BINDING SITE FOR RESIDUE FAD C 480
09	AC9	SOFTWARE	ASN C:225 , GLY C:402 , PHE C:474	BINDING SITE FOR RESIDUE NHE C 475
10	BC1	SOFTWARE	SER D:168 , ILE D:189 , CYS D:277 , ARG D:280 , FAD D:480	BINDING SITE FOR RESIDUE BME D 500
11	BC2	SOFTWARE	HIS C:452 , ILE D:12 , GLY D:13 , GLY D:15 , PRO D:16 , GLY D:17 , GLU D:36 , LYS D:37 , ASN D:38 , GLY D:43 , THR D:44 , CYS D:45 , VAL D:48 , GLY D:49 , CYS D:50 , LYS D:54 , TYR D:118 , GLY D:119 , ALA D:147 , THR D:148 , GLY D:149 , SER D:150 , SER D:168 , ILE D:189 , ARG D:280 , PHE D:283 , GLY D:319 , ASP D:320 , MET D:326 , LEU D:327 , ALA D:328 , HIS D:329 , TYR D:359 , HOH D:476 , HOH D:486 , HOH D:489 , HOH D:490 , BME D:500	BINDING SITE FOR RESIDUE FAD D 480
12	BC3	SOFTWARE	ASN D:225 , PRO D:387 , GLY D:402 , HOH D:548	BINDING SITE FOR RESIDUE NHE D 475

Asymmetric Unit

No.	Residues
1	A:45	-	A:50
2	B:45	-	B:50
3	C:45	-	C:50
4	D:45	-	D:50

Asymmetric Unit

No.	Residues
1	His A:361	-	Pro A:362
2	His A:452	-	Pro A:453
3	His B:361	-	Pro B:362
4	His B:452	-	Pro B:453
5	His C:361	-	Pro C:362
6	His C:452	-	Pro C:453
7	His D:361	-	Pro D:362
8	His D:452	-	Pro D:453

Asymmetric Unit (13, 49)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_076985	I	47	T	DLDH_HUMAN	Disease (DLDD)	397514651	A/B/C/D	I	12	T
02	UniProt	VAR_006907	K	72	E	DLDH_HUMAN	Disease (DLDD)	121964987	A/B/C/D	K	37	E
03	UniProt	VAR_031922	K	104	T	DLDH_HUMAN	Polymorphism	1130477	A/B/C/D	K	69	T
04	UniProt	VAR_004978	F	276	C	ODB2_HUMAN	Disease (MSUD2)	---	E	H	158	C
05	UniProt	VAR_015820	G	229	C	DLDH_HUMAN	Disease (DLDD)	121964990	A/B/C/D	G	194	C
06	UniProt	VAR_014555	L	331	V	DLDH_HUMAN	Polymorphism	17624	A/B/C/D	L	296	V
07	UniProt	VAR_076987	M	361	V	DLDH_HUMAN	Disease (DLDD)	121964993	A/B/C/D	M	326	V
08	UniProt	VAR_076988	E	375	K	DLDH_HUMAN	Disease (DLDD)	121964992	A/B/C/D	E	340	K
09	UniProt	VAR_076989	I	393	T	DLDH_HUMAN	Disease (DLDD)	121964991	A/B/C/D	I	358	T
10	UniProt	VAR_076990	D	479	V	DLDH_HUMAN	Disease (DLDD)	397514649	A/B/C/D	D	444	V
11	UniProt	VAR_076991	R	482	G	DLDH_HUMAN	Disease (DLDD)	397514650	A/B/C/D	R	447	G
12	UniProt	VAR_006908	P	488	L	DLDH_HUMAN	Disease (DLDD)	121964988	A/B/C/D	P	453	L
13	UniProt	VAR_015821	R	495	G	DLDH_HUMAN	Disease (DLDD)	121964989	A/B/C/D	R	460	G

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (13, 25)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_076985	I	47	T	DLDH_HUMAN	Disease (DLDD)	397514651	A/B	I	12	T
02	UniProt	VAR_006907	K	72	E	DLDH_HUMAN	Disease (DLDD)	121964987	A/B	K	37	E
03	UniProt	VAR_031922	K	104	T	DLDH_HUMAN	Polymorphism	1130477	A/B	K	69	T
04	UniProt	VAR_004978	F	276	C	ODB2_HUMAN	Disease (MSUD2)	---	E	H	158	C
05	UniProt	VAR_015820	G	229	C	DLDH_HUMAN	Disease (DLDD)	121964990	A/B	G	194	C
06	UniProt	VAR_014555	L	331	V	DLDH_HUMAN	Polymorphism	17624	A/B	L	296	V
07	UniProt	VAR_076987	M	361	V	DLDH_HUMAN	Disease (DLDD)	121964993	A/B	M	326	V
08	UniProt	VAR_076988	E	375	K	DLDH_HUMAN	Disease (DLDD)	121964992	A/B	E	340	K
09	UniProt	VAR_076989	I	393	T	DLDH_HUMAN	Disease (DLDD)	121964991	A/B	I	358	T
10	UniProt	VAR_076990	D	479	V	DLDH_HUMAN	Disease (DLDD)	397514649	A/B	D	444	V
11	UniProt	VAR_076991	R	482	G	DLDH_HUMAN	Disease (DLDD)	397514650	A/B	R	447	G
12	UniProt	VAR_006908	P	488	L	DLDH_HUMAN	Disease (DLDD)	121964988	A/B	P	453	L
13	UniProt	VAR_015821	R	495	G	DLDH_HUMAN	Disease (DLDD)	121964989	A/B	R	460	G

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (12, 24)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_076985	I	47	T	DLDH_HUMAN	Disease (DLDD)	397514651	C/D	I	12	T
02	UniProt	VAR_006907	K	72	E	DLDH_HUMAN	Disease (DLDD)	121964987	C/D	K	37	E
03	UniProt	VAR_031922	K	104	T	DLDH_HUMAN	Polymorphism	1130477	C/D	K	69	T
05	UniProt	VAR_015820	G	229	C	DLDH_HUMAN	Disease (DLDD)	121964990	C/D	G	194	C
06	UniProt	VAR_014555	L	331	V	DLDH_HUMAN	Polymorphism	17624	C/D	L	296	V
07	UniProt	VAR_076987	M	361	V	DLDH_HUMAN	Disease (DLDD)	121964993	C/D	M	326	V
08	UniProt	VAR_076988	E	375	K	DLDH_HUMAN	Disease (DLDD)	121964992	C/D	E	340	K
09	UniProt	VAR_076989	I	393	T	DLDH_HUMAN	Disease (DLDD)	121964991	C/D	I	358	T
10	UniProt	VAR_076990	D	479	V	DLDH_HUMAN	Disease (DLDD)	397514649	C/D	D	444	V
11	UniProt	VAR_076991	R	482	G	DLDH_HUMAN	Disease (DLDD)	397514650	C/D	R	447	G
12	UniProt	VAR_006908	P	488	L	DLDH_HUMAN	Disease (DLDD)	121964988	C/D	P	453	L
13	UniProt	VAR_015821	R	495	G	DLDH_HUMAN	Disease (DLDD)	121964989	C/D	R	460	G

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (2, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PYRIDINE_REDOX_1	PS00076	Pyridine nucleotide-disulphide oxidoreductases class-I active site.	DLDH_HUMAN	77-87	4	A:42-52 B:42-52 C:42-52 D:42-52
2	PSBD	PS51826	Peripheral subunit-binding (PSBD) domain profile.	ODB2_HUMAN	172-209	2	E:111-148 F:111-148

Biological Unit 1 (2, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PYRIDINE_REDOX_1	PS00076	Pyridine nucleotide-disulphide oxidoreductases class-I active site.	DLDH_HUMAN	77-87	2	A:42-52 B:42-52 - -
2	PSBD	PS51826	Peripheral subunit-binding (PSBD) domain profile.	ODB2_HUMAN	172-209	1	E:111-148 -

Biological Unit 2 (2, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PYRIDINE_REDOX_1	PS00076	Pyridine nucleotide-disulphide oxidoreductases class-I active site.	DLDH_HUMAN	77-87	2	- - C:42-52 D:42-52
2	PSBD	PS51826	Peripheral subunit-binding (PSBD) domain profile.	ODB2_HUMAN	172-209	1	- F:111-148

Asymmetric Unit (16, 57)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000205402	1a	ENSE00001876887	chr7:107531415-107531734	320	DLDH_HUMAN	1-13	13	0	-	-
1.3a	ENST00000205402	3a	ENSE00000715773	chr7:107533645-107533723	79	DLDH_HUMAN	14-40	27	4	A:3-5 B:4-5 C:3-5 D:4-5	3 2 3 2
1.4	ENST00000205402	4	ENSE00000715774	chr7:107542183-107542262	80	DLDH_HUMAN	40-66	27	4	A:5-31 B:5-31 C:5-31 D:5-31	27 27 27 27
1.5	ENST00000205402	5	ENSE00000715776	chr7:107542770-107542838	69	DLDH_HUMAN	67-89	23	4	A:32-54 B:32-54 C:32-54 D:32-54	23 23 23 23
1.6a	ENST00000205402	6a	ENSE00001665843	chr7:107543923-107543992	70	DLDH_HUMAN	90-113	24	4	A:55-78 B:55-78 C:55-78 D:55-78	24 24 24 24
1.7e	ENST00000205402	7e	ENSE00001717474	chr7:107545403-107545503	101	DLDH_HUMAN	113-146	34	4	A:78-111 B:78-111 C:78-111 D:78-111	34 34 34 34
1.8b	ENST00000205402	8b	ENSE00001761545	chr7:107545806-107545949	144	DLDH_HUMAN	147-194	48	4	A:112-159 B:112-159 C:112-159 D:112-159	48 48 48 48
1.9a	ENST00000205402	9a	ENSE00001638968	chr7:107546712-107546813	102	DLDH_HUMAN	195-228	34	4	A:160-193 B:160-193 C:160-193 D:160-193	34 34 34 34
1.10b	ENST00000205402	10b	ENSE00001672433	chr7:107555951-107556141	191	DLDH_HUMAN	229-292	64	4	A:194-257 B:194-257 C:194-257 D:194-257	64 64 64 64
1.11	ENST00000205402	11	ENSE00001609201	chr7:107557239-107557409	171	DLDH_HUMAN	292-349	58	4	A:257-314 B:257-314 (gaps) C:257-314 D:257-314 (gaps)	58 58 58 58
1.12	ENST00000205402	12	ENSE00001752704	chr7:107557718-107557907	190	DLDH_HUMAN	349-412	64	4	A:314-377 B:314-377 C:314-377 D:314-377	64 64 64 64
1.13	ENST00000205402	13	ENSE00001658920	chr7:107558369-107558506	138	DLDH_HUMAN	413-458	46	4	A:378-423 B:378-423 C:378-423 D:378-423	46 46 46 46
1.14	ENST00000205402	14	ENSE00001606668	chr7:107559455-107559544	90	DLDH_HUMAN	459-488	30	4	A:424-453 B:424-453 C:424-453 D:424-453	30 30 30 30
1.15e	ENST00000205402	15e	ENSE00000881778	chr7:107559639-107560360	722	DLDH_HUMAN	489-509	21	4	A:454-474 B:454-474 C:454-474 D:454-474	21 21 21 21

2.1a	ENST00000370132	1a	ENSE00001451903	chr1:100715390-100715326	65	ODB2_HUMAN	1-17	17	0	-	-
2.2	ENST00000370132	2	ENSE00000831299	chr1:100706440-100706317	124	ODB2_HUMAN	18-59	42	0	-	-
2.3	ENST00000370132	3	ENSE00000831298	chr1:100701067-100700992	76	ODB2_HUMAN	59-84	26	0	-	-
2.4	ENST00000370132	4	ENSE00000831297	chr1:100696470-100696289	182	ODB2_HUMAN	84-145	62	0	-	-
2.5	ENST00000370132	5	ENSE00000831296	chr1:100684303-100684182	122	ODB2_HUMAN	145-185	41	2	E:110-124 F:111-124	15 14
2.6	ENST00000370132	6	ENSE00000831295	chr1:100681755-100681539	217	ODB2_HUMAN	186-258	73	2	E:125-152 F:125-153 (gaps)	28 32
2.7	ENST00000370132	7	ENSE00000831294	chr1:100680539-100680373	167	ODB2_HUMAN	258-313	56	1	E:153-160 -	8 -
2.8b	ENST00000370132	8b	ENSE00000831293	chr1:100676327-100676250	78	ODB2_HUMAN	314-339	26	0	-	-
2.9	ENST00000370132	9	ENSE00000831292	chr1:100672192-100672001	192	ODB2_HUMAN	340-403	64	0	-	-
2.10	ENST00000370132	10	ENSE00000831291	chr1:100671857-100671786	72	ODB2_HUMAN	404-427	24	0	-	-
2.11	ENST00000370132	11	ENSE00001451905	chr1:100661978-100659736	2243	ODB2_HUMAN	428-482	55	0	-	-

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:472
 aligned with DLDH_HUMAN | P09622 from UniProtKB/Swiss-Prot  Length:509

    Alignment length:472
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507  
           DLDH_HUMAN    38 QPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAASFGKSINF 509
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee..hhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee...eehhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee.eeeeee..eeeee.....eeeeeeeeeee...eee............eehhhhhh.......eeeee..hhhhhhhhhhhhhhh.eeeee...........hhhhhhhhhhhhhhh..eee..eeeeeeee.....eeeeeee......eeeee.eeee...eee.....hhhhhh.....................eee.hhhh....hhhhhhhhhhhhhhhhh......hhhhh.eee....eeeeee.hhhhhhh....eeeeeee...hhhhhhh.....eeeeeee.....eeeeeeee.hhhhhhhhhhhhhhhh.hhhhhhhh......hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------T------------------------E-------------------------------T----------------------------------------------------------------------------------------------------------------------------C-----------------------------------------------------------------------------------------------------V-----------------------------V-------------K-----------------T-------------------------------------------------------------------------------------V--G-----L------G-------------- SAPs(SNPs)
                    PROSITE ---------------------------------------PYRIDINE_RE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.3--------------------------Exon 1.5  PDB: A:32-54 Exon 1.6a  PDB: A:55-78 ---------------------------------Exon 1.8b  PDB: A:112-159 UniProt: 147-194      Exon 1.9a  PDB: A:160-193         Exon 1.10b  PDB: A:194-257 UniProt: 229-292                     --------------------------------------------------------Exon 1.12  PDB: A:314-377 UniProt: 349-412                      Exon 1.13  PDB: A:378-423 UniProt: 413-458    Exon 1.14  PDB: A:424-453     Exon 1.15e            Transcript 1 (1)
           Transcript 1 (2) --Exon 1.4  PDB: A:5-31      ----------------------------------------------Exon 1.7e  PDB: A:78-111          -------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.11  PDB: A:257-314 UniProt: 292-349                ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3rnm A   3 QPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAASFGKSINF 474
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472

Chain B from PDB  Type:PROTEIN  Length:468
 aligned with DLDH_HUMAN | P09622 from UniProtKB/Swiss-Prot  Length:509

    Alignment length:471
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508 
           DLDH_HUMAN    39 PIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAASFGKSINF 509
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhh...eeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee...eeehhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee..eeeeee..eeeee.....eeeeeeeeeee...eee............eehhhhhh.......eeeee..hhhhhhhhhhhhhhh.eeeeee..........hhhhhhhhhhhhhhh..eeee..eeeeeee.....eeeeee.---...eeeee.eeee...eee................................eee.hhhh....hhhhhhhhhhhhhhhhh......hhhhh.eee....eeeeee.hhhhhhh....eeeeeee...hhhhhhh.....eeeeeee.....eeeeeeee.hhhhhhhhhhhhhhh..hhhhhhh.......hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------T------------------------E-------------------------------T----------------------------------------------------------------------------------------------------------------------------C-----------------------------------------------------------------------------------------------------V-----------------------------V-------------K-----------------T-------------------------------------------------------------------------------------V--G-----L------G-------------- SAPs(SNPs)
                    PROSITE --------------------------------------PYRIDINE_RE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.--------------------------Exon 1.5  PDB: B:32-54 Exon 1.6a  PDB: B:55-78 ---------------------------------Exon 1.8b  PDB: B:112-159 UniProt: 147-194      Exon 1.9a  PDB: B:160-193         Exon 1.10b  PDB: B:194-257 UniProt: 229-292                     --------------------------------------------------------Exon 1.12  PDB: B:314-377 UniProt: 349-412                      Exon 1.13  PDB: B:378-423 UniProt: 413-458    Exon 1.14  PDB: B:424-453     Exon 1.15e            Transcript 1 (1)
           Transcript 1 (2) -Exon 1.4  PDB: B:5-31      ----------------------------------------------Exon 1.7e  PDB: B:78-111          -------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.11  PDB: B:257-314 (gaps) UniProt: 292-349         ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3rnm B   4 PIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEA---GKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAASFGKSINF 474
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253      |  -|      273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473 
                                                                                                                                                                                                                                                                                          260 264

Chain C from PDB  Type:PROTEIN  Length:472
 aligned with DLDH_HUMAN | P09622 from UniProtKB/Swiss-Prot  Length:509

    Alignment length:472
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507  
           DLDH_HUMAN    38 QPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAASFGKSINF 509
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee..hhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee..eeehhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee.eeeeee..eeeee.....eeeeeeeeeee...eee............eehhhhhh.......eeeee..hhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhhh.eee..eeeeeeee.....eeeeeee......eeeee.eeee...eee.....hhhhhh.....................eee.hhhh....hhhhhhhhhhhhhhhhh......hhhhh.eee....eeeeee.hhhhhhhh...eeeeeee...hhhhhhh.....eeeeeee.....eeeeeeee.hhhhhhhhhhhhhhh..hhhhhhh........hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------T------------------------E-------------------------------T----------------------------------------------------------------------------------------------------------------------------C-----------------------------------------------------------------------------------------------------V-----------------------------V-------------K-----------------T-------------------------------------------------------------------------------------V--G-----L------G-------------- SAPs(SNPs)
                    PROSITE ---------------------------------------PYRIDINE_RE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.3--------------------------Exon 1.5  PDB: C:32-54 Exon 1.6a  PDB: C:55-78 ---------------------------------Exon 1.8b  PDB: C:112-159 UniProt: 147-194      Exon 1.9a  PDB: C:160-193         Exon 1.10b  PDB: C:194-257 UniProt: 229-292                     --------------------------------------------------------Exon 1.12  PDB: C:314-377 UniProt: 349-412                      Exon 1.13  PDB: C:378-423 UniProt: 413-458    Exon 1.14  PDB: C:424-453     Exon 1.15e            Transcript 1 (1)
           Transcript 1 (2) --Exon 1.4  PDB: C:5-31      ----------------------------------------------Exon 1.7e  PDB: C:78-111          -------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.11  PDB: C:257-314 UniProt: 292-349                ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3rnm C   3 QPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAASFGKSINF 474
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472

Chain D from PDB  Type:PROTEIN  Length:468
 aligned with DLDH_HUMAN | P09622 from UniProtKB/Swiss-Prot  Length:509

    Alignment length:471
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508 
           DLDH_HUMAN    39 PIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAASFGKSINF 509
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Pyr_redox-3rnmD01 D:180-264                                                          -----------------------------------------------------------------------------------------Pyr_redox_dim-3rnmD09 D:354-463                                                                               ----------- Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Pyr_redox-3rnmD02 D:180-264                                                          -----------------------------------------------------------------------------------------Pyr_redox_dim-3rnmD10 D:354-463                                                                               ----------- Pfam domains (2)
           Pfam domains (3) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Pyr_redox-3rnmD03 D:180-264                                                          -----------------------------------------------------------------------------------------Pyr_redox_dim-3rnmD11 D:354-463                                                                               ----------- Pfam domains (3)
           Pfam domains (4) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Pyr_redox-3rnmD04 D:180-264                                                          -----------------------------------------------------------------------------------------Pyr_redox_dim-3rnmD12 D:354-463                                                                               ----------- Pfam domains (4)
           Pfam domains (5) ----Pyr_redox_2-3rnmD05 D:8-326                                                                                                                                                                                                                                                                                                    ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) ----Pyr_redox_2-3rnmD06 D:8-326                                                                                                                                                                                                                                                                                                    ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (6)
           Pfam domains (7) ----Pyr_redox_2-3rnmD07 D:8-326                                                                                                                                                                                                                                                                                                    ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (7)
           Pfam domains (8) ----Pyr_redox_2-3rnmD08 D:8-326                                                                                                                                                                                                                                                                                                    ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (8)
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhh.eee..eeehhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee.eeeeee..eeeee.....eeeeeeeeeee...eee............eehhhhhh.......eeeee..hhhhhhhhhhhhhhh.eeeee...........hhhhhhhhhhhhhhh..eee...eeeeeee.....eeeeee.---...eeeee.eeee...eee......hhhhh.....................eee.hhhh....hhhhhhhhhhhhhhhhh......hhhhh.eee....eeeeee.hhhhhhhh...eeeeeee...hhhhhhh.....eeeeeee.....eeeeeeee.hhhhhhhhhhhhhhh..hhhhhhh.......hhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------T------------------------E-------------------------------T----------------------------------------------------------------------------------------------------------------------------C-----------------------------------------------------------------------------------------------------V-----------------------------V-------------K-----------------T-------------------------------------------------------------------------------------V--G-----L------G-------------- SAPs(SNPs)
                    PROSITE --------------------------------------PYRIDINE_RE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.--------------------------Exon 1.5  PDB: D:32-54 Exon 1.6a  PDB: D:55-78 ---------------------------------Exon 1.8b  PDB: D:112-159 UniProt: 147-194      Exon 1.9a  PDB: D:160-193         Exon 1.10b  PDB: D:194-257 UniProt: 229-292                     --------------------------------------------------------Exon 1.12  PDB: D:314-377 UniProt: 349-412                      Exon 1.13  PDB: D:378-423 UniProt: 413-458    Exon 1.14  PDB: D:424-453     Exon 1.15e            Transcript 1 (1)
           Transcript 1 (2) -Exon 1.4  PDB: D:5-31      ----------------------------------------------Exon 1.7e  PDB: D:78-111          -------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.11  PDB: D:257-314 (gaps) UniProt: 292-349         ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3rnm D   4 PIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEA---GKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAASFGKSINF 474
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253      |  -|      273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473 
                                                                                                                                                                                                                                                                                          260 264

Chain E from PDB  Type:PROTEIN  Length:51
 aligned with ODB2_HUMAN | P11182 from UniProtKB/Swiss-Prot  Length:482

    Alignment length:108
                                   180       190       200       210       220       230       240       250       260       270        
           ODB2_HUMAN   171 TLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPPSPKVEIMPPPPKPKDMTVPILVSKPPVFTGKDKTEPIKGFQKAMVKTMSAALKIPHFGY 278
               SCOP domains d3rnme_ E: automated matches                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhh..hhhhh...hhhhh.hhhhhhhhhhhhh---------------------------------------------------------hhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------C-- SAPs(SNPs)
                    PROSITE -PSBD  PDB: E:111-148 UniProt: 172-209 --------------------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.5       Exon 2.6  PDB: E:125-152 UniProt: 186-258 [INCOMPLETE]                   -------------------- Transcript 2 (1)
           Transcript 2 (2) ---------------------------------------------------------------------------------------Exon 2.7 [INCOMPLETE] Transcript 2 (2)
                 3rnm E 110 TLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQT---------------------------------------------------------LEHHHHHH 160
                                   119       129       139       149  |      -         -         -         -         -         -|       
                                                                    152                                                       153

Chain F from PDB  Type:PROTEIN  Length:43
 aligned with ODB2_HUMAN | P11182 from UniProtKB/Swiss-Prot  Length:482

    Alignment length:46
                                   181       191       201       211      
           ODB2_HUMAN   172 LATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAIL 217
               SCOP domains d3rnmf_ F: automated matches                   SCOP domains
               CATH domains ---------------------------------------------- CATH domains
           Pfam domains (1) E3_binding-3rnmF01 F:111-146        ---------- Pfam domains (1)
           Pfam domains (2) E3_binding-3rnmF02 F:111-146        ---------- Pfam domains (2)
         Sec.struct. author ..hhhhhhhhhhh..hhhhh...hhhhh.hhhhhhhhhhhhh---h Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE PSBD  PDB: F:111-148 UniProt: 172-209 -------- PROSITE
           Transcript 2 (1) Exon 2.5      Exon 2.6  PDB: F:125-153 (gaps)  Transcript 2 (1)
           Transcript 2 (2) ---------------------------------------------- Transcript 2 (2)
                 3rnm F 111 LATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQT---L 153
                                   120       130       140       150 |   |
                                                                   152 153

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "CATH Domain" information available for 3RNM)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: NADP_Rossmann (1239)

Family: Pyr_redox (62)

Homo sapiens (Human) (8)

1a	Pyr_redox-3rnmD01	D:180-264
1b	Pyr_redox-3rnmD02	D:180-264
1c	Pyr_redox-3rnmD03	D:180-264
1d	Pyr_redox-3rnmD04	D:180-264

Family: Pyr_redox_2 (69)

Homo sapiens (Human) (8)

2a	Pyr_redox_2-3rnmD05	D:8-326
2b	Pyr_redox_2-3rnmD06	D:8-326
2c	Pyr_redox_2-3rnmD07	D:8-326
2d	Pyr_redox_2-3rnmD08	D:8-326

Clan: no clan defined [family: E3_binding] (14)

Family: E3_binding (14)

Homo sapiens (Human) (3)

3a	E3_binding-3rnmF01	F:111-146
3b	E3_binding-3rnmF02	F:111-146

Clan: no clan defined [family: Pyr_redox_dim] (44)

Family: Pyr_redox_dim (44)

Homo sapiens (Human) (7)

4a	Pyr_redox_dim-3rnmD09	D:354-463
4b	Pyr_redox_dim-3rnmD10	D:354-463
4c	Pyr_redox_dim-3rnmD11	D:354-463
4d	Pyr_redox_dim-3rnmD12	D:354-463

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (DLDH_HUMAN | P09622)

molecular function
	GO:0051287	NAD binding	Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
	GO:0004148	dihydrolipoyl dehydrogenase activity	Catalysis of the reaction: protein N6-(dihydrolipoyl)lysine + NAD+ = protein N6-(lipoyl)lysine + NADH + H+.
	GO:0050660	flavin adenine dinucleotide binding	Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
	GO:0043544	lipoamide binding	Interacting selectively and non-covalently with lipoamide, the functional form of lipoic acid in which the carboxyl group is attached to protein by an amide linkage to a lysine amino group.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016668	oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces NAD or NADP.
	GO:0034604	pyruvate dehydrogenase (NAD+) activity	Catalysis of the reaction: pyruvate + CoA + NAD+ = acetyl-CoA + CO2 + NADH.
biological process
	GO:0006103	2-oxoglutarate metabolic process	The chemical reactions and pathways involving oxoglutarate, the dianion of 2-oxoglutaric acid. It is a key constituent of the TCA cycle and a key intermediate in amino-acid metabolism.
	GO:0006086	acetyl-CoA biosynthetic process from pyruvate	The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate.
	GO:0007568	aging	A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death and may succeed developmental maturation (GO:0021700).
	GO:0009083	branched-chain amino acid catabolic process	The chemical reactions and pathways resulting in the breakdown of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine.
	GO:0045454	cell redox homeostasis	Any process that maintains the redox environment of a cell or compartment within a cell.
	GO:0051068	dihydrolipoamide metabolic process	The chemical reactions and pathways involving dihydrolipoamide, the reduced form of lipoamide, produced as an intermediate in the reactions in which lipoamide acts as a cofactor.
	GO:0007369	gastrulation	A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm.
	GO:0046487	glyoxylate metabolic process	The chemical reactions and pathways involving glyoxylate, the anion of glyoxylic acid, HOC-COOH.
	GO:0009106	lipoate metabolic process	The chemical reactions and pathways involving lipoate, 1,2-dithiolane-3-pentanoate, the anion derived from lipoic acid.
	GO:0006554	lysine catabolic process	The chemical reactions and pathways resulting in the breakdown of lysine, 2,6-diaminohexanoic acid.
	GO:0061732	mitochondrial acetyl-CoA biosynthetic process from pyruvate	The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate in the mitochondrion. The process begins with the transport of pyruvate from the cytosol to the mitochondrion where it is subsequently decarboxylated to form acetyl-CoA.
	GO:0006120	mitochondrial electron transport, NADH to ubiquinone	The transfer of electrons from NADH to ubiquinone that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex I.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0006090	pyruvate metabolic process	The chemical reactions and pathways involving pyruvate, 2-oxopropanoate.
	GO:0010510	regulation of acetyl-CoA biosynthetic process from pyruvate	Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate.
	GO:0042391	regulation of membrane potential	Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane.
	GO:0048240	sperm capacitation	A process required for sperm to reach fertilization competence. Sperm undergo an incompletely understood series of morphological and molecular maturational processes, termed capacitation, involving, among other processes, protein tyrosine phosphorylation and increased intracellular calcium.
	GO:0006099	tricarboxylic acid cycle	A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.
cellular component
	GO:0043159	acrosomal matrix	A structural framework, or 'dense core' at the interior of an acrosome. May regulate the distribution of hydrolases within the acrosome and their release during the acrosome reaction.
	GO:0005929	cilium	A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body.
	GO:0005759	mitochondrial matrix	The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0043209	myelin sheath	An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0045252	oxoglutarate dehydrogenase complex	A complex of multiple copies of three enzymatic components: oxoglutarate dehydrogenase (lipoamide) ; EC:1.2.4.2 (E1), dihydrolipoamide S-succinyltransferase ; EC:2.3.1.61 (E2) and dihydrolipoamide dehydrogenase ; EC:1.8.1.4 (E3); catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and carbon dioxide (CO2).
	GO:0045254	pyruvate dehydrogenase complex	Complex that carries out the oxidative decarboxylation of pyruvate to form acetyl-CoA; comprises subunits possessing three catalytic activities: pyruvate dehydrogenase (E1), dihydrolipoamide S-acetyltransferase (E2), and dihydrolipoamide dehydrogenase (E3).

Chain E,F (ODB2_HUMAN | P11182)

molecular function
	GO:0043754	dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity	Catalysis of the reaction: 2-methylpropanoyl-CoA + enzyme N6-(dihydrolipoyl)lysine = CoA + enzyme N6-(S-[2-methylpropanoyl]dihydrolipoyl)lysine.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
	GO:0031625	ubiquitin protein ligase binding	Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
biological process
	GO:0009083	branched-chain amino acid catabolic process	The chemical reactions and pathways resulting in the breakdown of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine.
	GO:0046487	glyoxylate metabolic process	The chemical reactions and pathways involving glyoxylate, the anion of glyoxylic acid, HOC-COOH.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
	GO:0005947	mitochondrial alpha-ketoglutarate dehydrogenase complex	Mitochondrial complex that possesses alpha-ketoglutarate dehydrogenase activity.
	GO:0005759	mitochondrial matrix	The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
	GO:0042645	mitochondrial nucleoid	The region of a mitochondrion to which the DNA is confined.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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	3rnm
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	DLDH_HUMAN \| P09622	:	1zmc 1zmd 1zy8 2f5z
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(no "Related Entries Specified in the PDB File" available for 3RNM)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 12)

Sites (12, 12)

SS Bonds (4, 4)

Cis Peptide Bonds (8, 8)

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