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(-) Description

Title :  CRYSTAL STRUCTURE OF THE E673A/C707A DOUBLE MUTANT OF THE C-TERMINAL DOMAIN OF RAT 10'FORMYLTETRAHYDROFOLATE DEHYDROGENASE IN COMPLEX WITH CO-PURIFIED NADP
 
Authors :  Y. Tsybovsky
Date :  11 Apr 11  (Deposition) - 27 Apr 11  (Release) - 31 Aug 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Fdh, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Tsybovsky, S. A. Krupenko
Conserved Catalytic Residues Of The Aldh1L1 Aldehyde Dehydrogenase Domain Control Binding And Discharging Of The Coenzyme.
J. Biol. Chem. V. 286 23357 2011
PubMed-ID: 21540484  |  Reference-DOI: 10.1074/JBC.M111.221069

(-) Compounds

Molecule 1 - ALDEHYDE DEHYDROGENASE 1 FAMILY, MEMBER L1
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: C-TERMINAL DOMAIN, RESIDUES 397-902
    Gene: ALDH1L1, FTHFD
    Mutation: YES
    Organism Common: BROWN RAT,RAT,RATS
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 36)

Asymmetric/Biological Unit (3, 36)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2NAP4Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3SO428Ligand/IonSULFATE ION

(-) Sites  (36, 36)

Asymmetric Unit (36, 36)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREVAL A:570 , ILE A:571 , PRO A:572 , TRP A:573 , ASN A:574 , LYS A:597 , ALA A:599 , GLN A:600 , SER A:629 , GLY A:630 , GLY A:634 , GLN A:635 , PHE A:648 , THR A:649 , GLY A:650 , SER A:651 , VAL A:654 , HIS A:657 , ILE A:658 , ALA A:673 , LEU A:674 , GLY A:675 , ALA A:707 , GLU A:804 , PHE A:806 , PHE A:872 , HOH A:1056 , HOH A:1080 , HOH A:1089 , HOH A:1100 , HOH A:1119 , HOH A:1170 , HOH A:1193 , HOH A:1206 , HOH A:1244 , HOH A:1260 , HOH A:1284 , HOH A:1349BINDING SITE FOR RESIDUE NAP A 903
02AC2SOFTWARELYS A:852 , ARG C:554BINDING SITE FOR RESIDUE SO4 A 3001
03AC3SOFTWAREARG A:636 , HOH A:1216BINDING SITE FOR RESIDUE SO4 A 3006
04AC4SOFTWAREARG A:764 , TYR A:799BINDING SITE FOR RESIDUE SO4 A 3011
05AC5SOFTWAREGLY A:881 , LYS A:882 , HOH A:1023 , HOH A:1175 , HOH A:1270 , LYS B:669 , LEU B:893 , ARG B:894 , ILE B:895 , HOH B:1089BINDING SITE FOR RESIDUE SO4 A 3014
06AC6SOFTWARELYS A:669 , LEU A:893 , ARG A:894 , ILE A:895 , HOH A:1233 , GLY B:881 , LYS B:882 , HOH B:1041BINDING SITE FOR RESIDUE SO4 A 3015
07AC7SOFTWAREARG A:551 , ARG A:554 , HOH A:1224 , LYS C:852BINDING SITE FOR RESIDUE SO4 A 3018
08AC8SOFTWAREASN A:548 , HOH A:1091 , HOH A:1342 , GLN B:528BINDING SITE FOR RESIDUE SO4 A 3021
09AC9SOFTWAREASN A:738 , GLU A:741 , ARG A:781 , HOH A:1354BINDING SITE FOR RESIDUE SO4 A 3024
10BC1SOFTWARETYR A:575 , MET A:578 , ASN A:706 , THR A:866 , HOH A:1359BINDING SITE FOR RESIDUE GOL A 2000
11BC2SOFTWAREVAL B:570 , ILE B:571 , PRO B:572 , TRP B:573 , ASN B:574 , LYS B:597 , ALA B:599 , GLN B:600 , SER B:629 , GLY B:630 , GLY B:634 , GLN B:635 , PHE B:648 , THR B:649 , GLY B:650 , SER B:651 , VAL B:654 , HIS B:657 , ILE B:658 , ALA B:673 , LEU B:674 , GLY B:675 , ALA B:707 , GLU B:804 , PHE B:806 , PHE B:872 , HOH B:1111 , HOH B:1124 , HOH B:1180 , HOH B:1216 , HOH B:1245 , HOH B:1263 , HOH B:1264 , HOH B:1278 , HOH B:1293 , HOH B:1308 , HOH B:1320 , HOH B:1347BINDING SITE FOR RESIDUE NAP B 903
12BC3SOFTWAREARG B:554 , ASP D:851 , LYS D:852BINDING SITE FOR RESIDUE SO4 B 3003
13BC4SOFTWARELYS B:852 , HOH B:1036 , ARG D:554BINDING SITE FOR RESIDUE SO4 B 3004
14BC5SOFTWAREARG B:636 , PRO B:641 , HOH B:1078 , HOH B:1322BINDING SITE FOR RESIDUE SO4 B 3005
15BC6SOFTWAREARG B:764BINDING SITE FOR RESIDUE SO4 B 3009
16BC7SOFTWAREARG B:551 , ARG B:554 , TYR D:848BINDING SITE FOR RESIDUE SO4 B 3019
17BC8SOFTWAREGLN A:528 , ASN B:548 , HOH B:1102 , HOH B:1274BINDING SITE FOR RESIDUE SO4 B 3022
18BC9SOFTWAREASN B:738 , GLU B:741 , ARG B:781 , HOH B:1028BINDING SITE FOR RESIDUE SO4 B 3025
19CC1SOFTWARETYR B:575 , ASN B:706 , THR B:866 , HOH B:1351BINDING SITE FOR RESIDUE GOL B 2001
20CC2SOFTWAREVAL C:570 , ILE C:571 , PRO C:572 , TRP C:573 , ASN C:574 , LYS C:597 , ALA C:599 , GLN C:600 , SER C:629 , GLY C:630 , GLY C:634 , GLN C:635 , PHE C:648 , THR C:649 , GLY C:650 , SER C:651 , VAL C:654 , HIS C:657 , ILE C:658 , ALA C:673 , LEU C:674 , GLY C:675 , ALA C:707 , GLU C:804 , PHE C:806 , PHE C:872 , HOH C:1061 , HOH C:1117 , HOH C:1173 , HOH C:1228 , HOH C:1252 , HOH C:1255 , HOH C:1256 , HOH C:1259 , HOH C:1262 , HOH C:1352BINDING SITE FOR RESIDUE NAP C 903
21CC3SOFTWAREARG A:554 , LYS C:852 , HOH C:1321BINDING SITE FOR RESIDUE SO4 C 3002
22CC4SOFTWAREARG C:636 , PRO C:641BINDING SITE FOR RESIDUE SO4 C 3007
23CC5SOFTWAREARG C:764BINDING SITE FOR RESIDUE SO4 C 3010
24CC6SOFTWARELYS C:669 , LEU C:893 , ARG C:894 , ILE C:895 , HOH C:1190 , HOH C:1201 , GLY D:881 , LYS D:882 , HOH D:1050BINDING SITE FOR RESIDUE SO4 C 3013
25CC7SOFTWARETYR A:848 , ARG C:551 , ARG C:554 , HOH C:1112BINDING SITE FOR RESIDUE SO4 C 3017
26CC8SOFTWAREASN C:548 , HOH C:1191 , HOH C:1223 , GLN D:528BINDING SITE FOR RESIDUE SO4 C 3023
27CC9SOFTWAREHOH A:1277 , ASN C:738 , ARG C:781 , HOH C:1085BINDING SITE FOR RESIDUE SO4 C 3026
28DC1SOFTWARELEU A:416 , THR A:417 , LYS C:415 , ARG C:742 , HOH C:1102BINDING SITE FOR RESIDUE SO4 C 3028
29DC2SOFTWARETYR C:575 , ASN C:706 , THR C:866 , HOH C:1363BINDING SITE FOR RESIDUE GOL C 2002
30DC3SOFTWAREVAL D:570 , ILE D:571 , PRO D:572 , TRP D:573 , ASN D:574 , LYS D:597 , ALA D:599 , GLN D:600 , SER D:629 , GLY D:630 , GLY D:634 , GLN D:635 , PHE D:648 , THR D:649 , GLY D:650 , SER D:651 , VAL D:654 , HIS D:657 , ILE D:658 , ALA D:673 , LEU D:674 , GLY D:675 , ALA D:707 , GLU D:804 , PHE D:806 , PHE D:872 , HOH D:1054 , HOH D:1151 , HOH D:1178 , HOH D:1200 , HOH D:1231 , HOH D:1258 , HOH D:1260 , HOH D:1263 , HOH D:1334 , HOH D:1355BINDING SITE FOR RESIDUE NAP D 903
31DC4SOFTWAREARG D:636 , PRO D:641 , HOH D:1246BINDING SITE FOR RESIDUE SO4 D 3008
32DC5SOFTWAREARG D:764BINDING SITE FOR RESIDUE SO4 D 3012
33DC6SOFTWAREGLY C:881 , LYS C:882 , HOH C:1016 , LYS D:669 , LEU D:893 , ARG D:894 , ILE D:895 , HOH D:1053 , HOH D:1158 , HOH D:1184 , HOH D:1318BINDING SITE FOR RESIDUE SO4 D 3016
34DC7SOFTWARETYR B:848 , ARG D:551 , ARG D:554BINDING SITE FOR RESIDUE SO4 D 3020
35DC8SOFTWARETHR D:445 , ASN D:738 , ARG D:781 , HOH D:1104BINDING SITE FOR RESIDUE SO4 D 3027
36DC9SOFTWAREASN D:706 , THR D:866BINDING SITE FOR RESIDUE GOL D 2003

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3RHL)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Arg A:551 -Pro A:552
2Arg B:551 -Pro B:552
3Arg C:551 -Pro C:552
4Arg D:551 -Pro D:552

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RHL)

(-) PROSITE Motifs  (2, 8)

Asymmetric/Biological Unit (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALDEHYDE_DEHYDR_GLUPS00687 Aldehyde dehydrogenases glutamic acid active site.AL1L1_RAT672-679
 
 
 		  4A:672-679
B:672-679
C:672-679
D:672-679
2ALDEHYDE_DEHYDR_CYSPS00070 Aldehyde dehydrogenases cysteine active site.AL1L1_RAT700-711
 
 
 		  4A:700-711
B:700-711
C:700-711
D:700-711

(-) Exons   (0, 0)

(no "Exon" information available for 3RHL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:498
 aligned with AL1L1_RAT | P28037 from UniProtKB/Swiss-Prot  Length:902

    Alignment length:498
                                   414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894        
            AL1L1_RAT   405 VINYVEKAVNKLTLQMPYQLFIGGEFVDAEGSKTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRIKTVTFEY 902
               SCOP domains d3rhla_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee..eeeee...eee..eee.hhhh.eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhh.eeee........eeeeeeeeee..eeeee....hhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhh......eee......hhhhhhhhh....eeeee.hhhhhhhhhhhhhhh...eeeee....eeeee....hhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhh..eeee..............eeee.....hhhhhh.....eeeeeee....hhhhhhhhhh.......eee..hhhhhhhhhhhh...eeee..............hhh.ee...hhhhhhh..eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE--------------------ALDEHYDE_DEH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3rhl A 405 VINYVEKAVNKLTLQMPYQLFIGGEFVDAEGSKTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCALSNVKKVSLALGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENAIAAGRLFVEESIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRIKTVTFEY 902
                                   414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894        


Chain B from PDB  Type:PROTEIN  Length:498
 aligned with AL1L1_RAT | P28037 from UniProtKB/Swiss-Prot  Length:902

    Alignment length:498
                                   414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894        
            AL1L1_RAT   405 VINYVEKAVNKLTLQMPYQLFIGGEFVDAEGSKTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRIKTVTFEY 902
               SCOP domains d3rhlb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee..eeeee...eee..eee.hhhh.eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhh.eeee........eeeeeeeeee..eeeee....hhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhh......eee......hhhhhhhhh....eeeee.hhhhhhhhhhhhhhh...eeeee....eeeee....hhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhh..eeee..............eeee.....hhhhh......eeeeeee...hhhhhhhhhhh.......eee..hhhhhhhhhhhh...eeee..............hhh.ee....hhhhhhh.eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE--------------------ALDEHYDE_DEH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3rhl B 405 VINYVEKAVNKLTLQMPYQLFIGGEFVDAEGSKTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCALSNVKKVSLALGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENAIAAGRLFVEESIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRIKTVTFEY 902
                                   414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894        


Chain C from PDB  Type:PROTEIN  Length:498
 aligned with AL1L1_RAT | P28037 from UniProtKB/Swiss-Prot  Length:902

    Alignment length:498
                                   414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894        
            AL1L1_RAT   405 VINYVEKAVNKLTLQMPYQLFIGGEFVDAEGSKTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRIKTVTFEY 902
               SCOP domains d3rhlc_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee..eeeee...eee..eee.hhhh.eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhh.eeee........eeeeeeeeee..eeeee....hhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhh......eee......hhhhhhhhh....eeeee.hhhhhhhhhhhhhhh...eeeee....eeeee....hhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhh..eeee..............eeee.....hhhhhh.....eeeeeee....hhhhhhhhhh.......eee..hhhhhhhhhhhh...eeee..............hhh.ee....hhhhhhh.eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE--------------------ALDEHYDE_DEH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3rhl C 405 VINYVEKAVNKLTLQMPYQLFIGGEFVDAEGSKTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCALSNVKKVSLALGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENAIAAGRLFVEESIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRIKTVTFEY 902
                                   414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894        


Chain D from PDB  Type:PROTEIN  Length:498
 aligned with AL1L1_RAT | P28037 from UniProtKB/Swiss-Prot  Length:902

    Alignment length:498
                                   414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894        
            AL1L1_RAT   405 VINYVEKAVNKLTLQMPYQLFIGGEFVDAEGSKTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRIKTVTFEY 902
               SCOP domains d3rhld_ D: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeee..eeeeee..eee..eee.hhhh.eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhh.eeee........eeeeeeeeee..eeeee....hhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh.....eee......hhhhhhhhh....eeeee.hhhhhhhhhhhhhhh...eeeee....eeeee....hhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhh..eeee..............eeee.....hhhhhh.....eeeeeee....hhhhhhhhhh.......eee..hhhhhhhhhhhh...eeee..............hhh.ee...hhhhhhh..eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE--------------------ALDEHYDE_DEH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3rhl D 405 VINYVEKAVNKLTLQMPYQLFIGGEFVDAEGSKTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCALSNVKKVSLALGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENAIAAGRLFVEESIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRIKTVTFEY 902
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 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RHL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3RHL)

(-) Gene Ontology  (19, 19)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (AL1L1_RAT | P28037)
molecular function
    GO:0047105    4-trimethylammoniobutyraldehyde dehydrogenase activity    Catalysis of the reaction: NAD+ + 4-trimethylammoniobutanal = NADH + 4-trimethylammoniobutanoate.
    GO:0033721    aldehyde dehydrogenase (NADP+) activity    Catalysis of the reaction: an aldehyde + NADP+ + H2O = an acid + NADPH + H+.
    GO:0004030    aldehyde dehydrogenase [NAD(P)+] activity    Catalysis of the reaction: an aldehyde + NAD(P)+ + H2O = an acid + NAD(P)H + H+.
    GO:0019145    aminobutyraldehyde dehydrogenase activity    Catalysis of the reaction: 4-aminobutanal + NAD+ + H2O = 4-aminobutanoate + NADH + 2 H+.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016155    formyltetrahydrofolate dehydrogenase activity    Catalysis of the reaction: 10-formyltetrahydrofolate + H(2)O + NADP(+) = (6S)-5,6,7,8-tetrahydrofolate + CO(2) + H(+) + NADPH.
    GO:0016742    hydroxymethyl-, formyl- and related transferase activity    Catalysis of the transfer of a hydroxymethyl- or formyl group from one compound (donor) to another (acceptor).
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016620    oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
    GO:0032403    protein complex binding    Interacting selectively and non-covalently with any protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0009258    10-formyltetrahydrofolate catabolic process    The chemical reactions and pathways resulting in the breakdown of 10-formyltetrahydrofolate, the formylated derivative of tetrahydrofolate.
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0006730    one-carbon metabolic process    The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0046654    tetrahydrofolate biosynthetic process    The chemical reactions and pathways resulting in the formation of tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin group.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.

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  AL1L1_RAT | P28037
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AL1L1_RAT | P28037: 1s3i 2o2p 2o2q 2o2r 3rhj 3rhm 3rho 3rhp 3rhq 3rhr 4gnz 4go0 4go2

(-) Related Entries Specified in the PDB File

3rhj 3rhm 3rho 3rhp 3rhq 3rhr