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(-) Description

Title :  CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF RAT 10'FORMYLTETRAHYDROFOLATE DEHYDROGENASE IN COMPLEX WITH NADP
 
Authors :  Y. Tsybovsky, H. Donato, N. I. Krupenko, C. Davies, S. A. Krupenko
Date :  30 Nov 06  (Deposition) - 06 Mar 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  A,B,C,D  (2x)
Biol. Unit 3:  A (2x),B (2x),C (2x),D (2x)
Keywords :  Aldehyde Dehydrogenase, Fdh, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Tsybovsky, H. Donato, N. I. Krupenko, C. Davies, S. A. Krupenko
Crystal Structures Of The Carboxyl Terminal Domain Of Rat 10-Formyltetrahydrofolate Dehydrogenase: Implications For The Catalytic Mechanism Of Aldehyde Dehydrogenases.
Biochemistry V. 46 2917 2007
PubMed-ID: 17302434  |  Reference-DOI: 10.1021/BI0619573

(-) Compounds

Molecule 1 - FORMYLTETRAHYDROFOLATE DEHYDROGENASE
    Chains: A, B, C, D
    EC Number: 1.5.1.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PRSET-B
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL DOMAIN, RESIDUES 397-902
    Gene: FTHFD
    Organism Common: NORWAY RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): ABCD
Biological Unit 2 (2x): ABCD
Biological Unit 3 (2x): A (2x)B (2x)C (2x)D (2x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 40)

Asymmetric Unit (4, 40)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2MG4Ligand/IonMAGNESIUM ION
3NAP4Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4SO428Ligand/IonSULFATE ION
Biological Unit 1 (3, 36)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2MG-1Ligand/IonMAGNESIUM ION
3NAP4Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4SO428Ligand/IonSULFATE ION
Biological Unit 2 (3, 72)
No.NameCountTypeFull Name
1GOL8Ligand/IonGLYCEROL
2MG-1Ligand/IonMAGNESIUM ION
3NAP8Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4SO456Ligand/IonSULFATE ION
Biological Unit 3 (3, 38)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2MG-1Ligand/IonMAGNESIUM ION
3NAP4Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4SO430Ligand/IonSULFATE ION

(-) Sites  (40, 40)

Asymmetric Unit (40, 40)
No.NameEvidenceResiduesDescription
01AC1SOFTWARENAP A:903BINDING SITE FOR RESIDUE MG A 2001
02AC2SOFTWARENAP B:903BINDING SITE FOR RESIDUE MG B 2002
03AC3SOFTWARENAP C:903BINDING SITE FOR RESIDUE MG C 2003
04AC4SOFTWARENAP D:903BINDING SITE FOR RESIDUE MG D 2004
05AC5SOFTWARELYS A:852 , ARG C:554BINDING SITE FOR RESIDUE SO4 A 3001
06AC6SOFTWAREARG A:554 , LYS C:852 , HOH C:3110BINDING SITE FOR RESIDUE SO4 A 3002
07AC7SOFTWAREARG B:554 , ASP D:851 , LYS D:852 , HOH D:3205BINDING SITE FOR RESIDUE SO4 D 3003
08AC8SOFTWARELYS B:852 , HOH B:3146 , ARG D:554BINDING SITE FOR RESIDUE SO4 B 3004
09AC9SOFTWAREARG B:636 , PRO B:641 , HOH B:3322BINDING SITE FOR RESIDUE SO4 B 3005
10BC1SOFTWAREARG A:636 , PRO A:641 , HOH A:3470 , HOH A:3473BINDING SITE FOR RESIDUE SO4 A 3006
11BC2SOFTWAREARG C:636 , PRO C:641BINDING SITE FOR RESIDUE SO4 C 3007
12BC3SOFTWAREARG D:636 , PRO D:641BINDING SITE FOR RESIDUE SO4 D 3008
13BC4SOFTWAREARG B:764BINDING SITE FOR RESIDUE SO4 B 3009
14BC5SOFTWAREARG C:764BINDING SITE FOR RESIDUE SO4 C 3010
15BC6SOFTWAREARG A:764 , TYR A:799BINDING SITE FOR RESIDUE SO4 A 3011
16BC7SOFTWAREARG D:764BINDING SITE FOR RESIDUE SO4 D 3012
17BC8SOFTWARELYS C:669 , ARG C:894 , ILE C:895 , HOH C:3035 , HOH C:3105 , HOH C:3170 , HOH C:3183 , HOH C:3402 , GLY D:881 , LYS D:882BINDING SITE FOR RESIDUE SO4 C 3013
18BC9SOFTWAREGLY A:881 , LYS A:882 , HOH A:3028 , HOH A:3249 , LYS B:669 , LEU B:893 , ARG B:894 , ILE B:895 , HOH B:3065BINDING SITE FOR RESIDUE SO4 A 3014
19CC1SOFTWARELYS A:669 , LEU A:893 , ARG A:894 , ILE A:895 , HOH A:3173 , HOH A:3203 , HOH A:3363 , GLY B:881 , LYS B:882 , HOH B:3027BINDING SITE FOR RESIDUE SO4 A 3015
20CC2SOFTWAREGLY C:881 , LYS C:882 , LYS D:669 , LEU D:893 , ARG D:894 , ILE D:895 , HOH D:3030 , HOH D:3120 , HOH D:3208 , HOH D:3282BINDING SITE FOR RESIDUE SO4 D 3016
21CC3SOFTWARETYR A:848 , ARG C:551 , ARG C:554BINDING SITE FOR RESIDUE SO4 C 3017
22CC4SOFTWAREARG A:551 , ARG A:554 , TYR C:848 , LYS C:852BINDING SITE FOR RESIDUE SO4 A 3018
23CC5SOFTWAREARG B:551 , ARG B:554 , TYR D:848BINDING SITE FOR RESIDUE SO4 B 3019
24CC6SOFTWARETYR B:848 , ARG D:551 , ARG D:554BINDING SITE FOR RESIDUE SO4 D 3020
25CC7SOFTWAREASN A:548 , HOH A:3165 , HOH A:3315 , HOH A:3466 , GLN B:528BINDING SITE FOR RESIDUE SO4 A 3021
26CC8SOFTWAREGLN A:528 , ASN B:548 , HOH B:3190 , HOH B:3328 , HOH B:3361BINDING SITE FOR RESIDUE SO4 B 3022
27CC9SOFTWAREASN C:548 , HOH C:3252 , HOH C:3294 , HOH C:3491 , LYS D:520 , GLN D:528BINDING SITE FOR RESIDUE SO4 C 3023
28DC1SOFTWAREASN A:738 , GLU A:741 , ARG A:781 , HOH A:3201 , HOH A:3476 , HOH C:3297BINDING SITE FOR RESIDUE SO4 A 3024
29DC2SOFTWARETHR B:445 , ASN B:738 , GLU B:741 , ARG B:781 , HOH B:3158BINDING SITE FOR RESIDUE SO4 B 3025
30DC3SOFTWAREASN C:738 , ARG C:781 , HOH C:3068BINDING SITE FOR RESIDUE SO4 C 3026
31DC4SOFTWAREASN D:738 , ARG D:781 , HOH D:3393 , HOH D:3488BINDING SITE FOR RESIDUE SO4 D 3027
32DC5SOFTWARELEU A:416 , THR A:417 , LYS C:415 , ARG C:742BINDING SITE FOR RESIDUE SO4 C 3028
33DC6SOFTWAREVAL A:570 , ILE A:571 , TRP A:573 , ASN A:574 , LYS A:597 , ALA A:599 , GLN A:600 , SER A:629 , GLY A:630 , GLY A:634 , GLN A:635 , PHE A:648 , THR A:649 , GLY A:650 , SER A:651 , VAL A:654 , HIS A:657 , ILE A:658 , GLU A:673 , LEU A:674 , GLY A:675 , CYS A:707 , GLU A:804 , PHE A:806 , LEU A:834 , PHE A:872 , MG A:2001 , HOH A:3128 , HOH A:3139 , HOH A:3148 , HOH A:3149 , HOH A:3199 , HOH A:3200 , HOH A:3288 , HOH A:3322 , HOH A:3325 , HOH A:3364BINDING SITE FOR RESIDUE NAP A 903
34DC7SOFTWAREVAL B:570 , ILE B:571 , TRP B:573 , ASN B:574 , LYS B:597 , ALA B:599 , GLN B:600 , SER B:629 , GLY B:630 , GLY B:634 , GLN B:635 , PHE B:648 , THR B:649 , GLY B:650 , SER B:651 , VAL B:654 , HIS B:657 , ILE B:658 , GLU B:673 , LEU B:674 , GLY B:675 , CYS B:707 , GLU B:804 , PHE B:806 , LEU B:834 , PHE B:872 , MG B:2002 , HOH B:3066 , HOH B:3085 , HOH B:3160 , HOH B:3166 , HOH B:3198 , HOH B:3204 , HOH B:3337 , HOH B:3339BINDING SITE FOR RESIDUE NAP B 903
35DC8SOFTWAREVAL C:570 , ILE C:571 , TRP C:573 , ASN C:574 , LYS C:597 , ALA C:599 , GLN C:600 , SER C:629 , GLY C:630 , GLY C:634 , GLN C:635 , PHE C:648 , THR C:649 , GLY C:650 , SER C:651 , VAL C:654 , HIS C:657 , ILE C:658 , GLU C:673 , LEU C:674 , GLY C:675 , CYS C:707 , GLU C:804 , PHE C:806 , LEU C:834 , PHE C:872 , MG C:2003 , HOH C:3087 , HOH C:3097 , HOH C:3122 , HOH C:3126 , HOH C:3165 , HOH C:3230 , HOH C:3376 , HOH C:3393 , HOH C:3407 , HOH C:3483BINDING SITE FOR RESIDUE NAP C 903
36DC9SOFTWAREVAL D:570 , ILE D:571 , TRP D:573 , ASN D:574 , LYS D:597 , ALA D:599 , GLN D:600 , SER D:629 , GLY D:630 , GLY D:634 , GLN D:635 , PHE D:648 , THR D:649 , GLY D:650 , SER D:651 , VAL D:654 , HIS D:657 , ILE D:658 , GLU D:673 , LEU D:674 , GLY D:675 , CYS D:707 , GLU D:804 , PHE D:806 , LEU D:834 , PHE D:872 , MG D:2004 , HOH D:3062 , HOH D:3076 , HOH D:3114 , HOH D:3164 , HOH D:3170 , HOH D:3229 , HOH D:3295 , HOH D:3358 , HOH D:3368BINDING SITE FOR RESIDUE NAP D 903
37EC1SOFTWARETYR A:575 , TRP A:582 , ASN A:706 , ILE A:708 , THR A:866BINDING SITE FOR RESIDUE GOL A 1
38EC2SOFTWARETYR B:575 , MET B:578 , PHE B:701 , ASN B:706 , ASN B:864 , THR B:866BINDING SITE FOR RESIDUE GOL B 2
39EC3SOFTWARETYR C:575 , TRP C:582 , PHE C:701 , ASN C:706 , ASN C:864 , THR C:866 , HOH C:3447BINDING SITE FOR RESIDUE GOL C 3
40EC4SOFTWARETYR D:575 , MET D:578 , PHE D:701 , ASN D:706 , ASN D:864 , THR D:866BINDING SITE FOR RESIDUE GOL D 4

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2O2Q)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Arg A:551 -Pro A:552
2Arg B:551 -Pro B:552
3Arg C:551 -Pro C:552
4Arg D:551 -Pro D:552

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2O2Q)

(-) PROSITE Motifs  (2, 8)

Asymmetric Unit (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALDEHYDE_DEHYDR_GLUPS00687 Aldehyde dehydrogenases glutamic acid active site.AL1L1_RAT672-679
 
 
 		  4A:672-679
B:672-679
C:672-679
D:672-679
2ALDEHYDE_DEHYDR_CYSPS00070 Aldehyde dehydrogenases cysteine active site.AL1L1_RAT700-711
 
 
 		  4A:700-711
B:700-711
C:700-711
D:700-711
Biological Unit 1 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALDEHYDE_DEHYDR_GLUPS00687 Aldehyde dehydrogenases glutamic acid active site.AL1L1_RAT672-679
 
 
 		  4A:672-679
B:672-679
C:672-679
D:672-679
2ALDEHYDE_DEHYDR_CYSPS00070 Aldehyde dehydrogenases cysteine active site.AL1L1_RAT700-711
 
 
 		  4A:700-711
B:700-711
C:700-711
D:700-711
Biological Unit 2 (2, 16)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALDEHYDE_DEHYDR_GLUPS00687 Aldehyde dehydrogenases glutamic acid active site.AL1L1_RAT672-679
 
 
 		  8A:672-679
B:672-679
C:672-679
D:672-679
2ALDEHYDE_DEHYDR_CYSPS00070 Aldehyde dehydrogenases cysteine active site.AL1L1_RAT700-711
 
 
 		  8A:700-711
B:700-711
C:700-711
D:700-711
Biological Unit 3 (2, 16)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALDEHYDE_DEHYDR_GLUPS00687 Aldehyde dehydrogenases glutamic acid active site.AL1L1_RAT672-679
 
 
 		  8A:672-679
B:672-679
C:672-679
D:672-679
2ALDEHYDE_DEHYDR_CYSPS00070 Aldehyde dehydrogenases cysteine active site.AL1L1_RAT700-711
 
 
 		  8A:700-711
B:700-711
C:700-711
D:700-711

(-) Exons   (0, 0)

(no "Exon" information available for 2O2Q)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:498
 aligned with AL1L1_RAT | P28037 from UniProtKB/Swiss-Prot  Length:902

    Alignment length:498
                                   414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894        
            AL1L1_RAT   405 VINYVEKAVNKLTLQMPYQLFIGGEFVDAEGSKTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRIKTVTFEY 902
               SCOP domains d2o2qa_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -----2o2qA01 A:410-675,A:868-902 Aldehyde Dehydrogenase; Chain A, domain 1                                                                                                                                                                                                     2o2qA02 A:676-867 Aldehyde Dehydrogenase; Chain A, domain 2                                                                                                                                     2o2qA01 A:410-675,A:868-902         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee..eeeee...eee..eee.hhhh.eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhh.eeee........eeeeeeeeee..eeeee....hhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhh......eee......hhhhhhhhh....eeeee.hhhhhhhhhhhhhhh...eeeee....eeeee....hhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhh..eeee..............eeee.....hhhhhh.....eeeeeee....hhhhhhhhhh.......eee..hhhhhhhhhhhh...eeee..............hhh.ee...hhhhhhh..eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE--------------------ALDEHYDE_DEH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2o2q A 405 VINYVEKAVNKLTLQMPYQLFIGGEFVDAEGSKTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRIKTVTFEY 902
                                   414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894        


Chain B from PDB  Type:PROTEIN  Length:498
 aligned with AL1L1_RAT | P28037 from UniProtKB/Swiss-Prot  Length:902

    Alignment length:498
                                   414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894        
            AL1L1_RAT   405 VINYVEKAVNKLTLQMPYQLFIGGEFVDAEGSKTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRIKTVTFEY 902
               SCOP domains d2o2qb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -----2o2qB01 B:410-675,B:868-902 Aldehyde Dehydrogenase; Chain A, domain 1                                                                                                                                                                                                     2o2qB02 B:676-867 Aldehyde Dehydrogenase; Chain A, domain 2                                                                                                                                     2o2qB01 B:410-675,B:868-902         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee..eeeee...eee..eee.hhhh.eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhh.eeee........eeeeeeeeee..eeeee....hhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhh......eee......hhhhhhhhh....eeeee.hhhhhhhhhhhhhhh...eeeee....eeeee....hhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhh..eeee..............eeee.....hhhhhh.....eeeeeee...hhhhhhhhhhh.......eee..hhhhhhhhhhhh...eeee..............hhh.ee...hhhhhhh..eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE--------------------ALDEHYDE_DEH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2o2q B 405 VINYVEKAVNKLTLQMPYQLFIGGEFVDAEGSKTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRIKTVTFEY 902
                                   414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894        


Chain C from PDB  Type:PROTEIN  Length:498
 aligned with AL1L1_RAT | P28037 from UniProtKB/Swiss-Prot  Length:902

    Alignment length:498
                                   414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894        
            AL1L1_RAT   405 VINYVEKAVNKLTLQMPYQLFIGGEFVDAEGSKTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRIKTVTFEY 902
               SCOP domains d2o2qc_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -----2o2qC01 C:410-675,C:868-902 Aldehyde Dehydrogenase; Chain A, domain 1                                                                                                                                                                                                     2o2qC02 C:676-867 Aldehyde Dehydrogenase; Chain A, domain 2                                                                                                                                     2o2qC01 C:410-675,C:868-902         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee..eeeee...eee..eee.hhhh.eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhh.eeee........eeeeeeeeee..eeeee....hhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhh......eee......hhhhhhhhh....eeeee.hhhhhhhhhhhhhhh...eeeee....eeeee....hhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhh..eeee..............eeee.....hhhhhh.....eeeeeee....hhhhhhhhh........eee..hhhhhhhhhhhh...eeee..............hhh.ee...hhhhhhh..eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE--------------------ALDEHYDE_DEH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2o2q C 405 VINYVEKAVNKLTLQMPYQLFIGGEFVDAEGSKTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRIKTVTFEY 902
                                   414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894        


Chain D from PDB  Type:PROTEIN  Length:498
 aligned with AL1L1_RAT | P28037 from UniProtKB/Swiss-Prot  Length:902

    Alignment length:498
                                   414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894        
            AL1L1_RAT   405 VINYVEKAVNKLTLQMPYQLFIGGEFVDAEGSKTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRIKTVTFEY 902
               SCOP domains d2o2qd_ D: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -----2o2qD01 D:410-675,D:868-902 Aldehyde Dehydrogenase; Chain A, domain 1                                                                                                                                                                                                     2o2qD02 D:676-867 Aldehyde Dehydrogenase; Chain A, domain 2                                                                                                                                     2o2qD01 D:410-675,D:868-902         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee..eeeee...eee..eee.hhhh.eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhh.eeee........eeeeeeeeee..eeeee....hhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhh......eee......hhhhhhhhh....eeeee.hhhhhhhhhhhhhhh...eeeee....eeeee....hhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhh..eeee..............eeee.....hhhhhh.....eeeeeee....hhhhhhhhhh.......eee..hhhhhhhhhhhh...eeee..............hhh.ee...hhhhhhh..eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE--------------------ALDEHYDE_DEH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2o2q D 405 VINYVEKAVNKLTLQMPYQLFIGGEFVDAEGSKTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFGKDLGEAALNEYLRIKTVTFEY 902
                                   414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2O2Q)

(-) Gene Ontology  (19, 19)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (AL1L1_RAT | P28037)
molecular function
    GO:0047105    4-trimethylammoniobutyraldehyde dehydrogenase activity    Catalysis of the reaction: NAD+ + 4-trimethylammoniobutanal = NADH + 4-trimethylammoniobutanoate.
    GO:0033721    aldehyde dehydrogenase (NADP+) activity    Catalysis of the reaction: an aldehyde + NADP+ + H2O = an acid + NADPH + H+.
    GO:0004030    aldehyde dehydrogenase [NAD(P)+] activity    Catalysis of the reaction: an aldehyde + NAD(P)+ + H2O = an acid + NAD(P)H + H+.
    GO:0019145    aminobutyraldehyde dehydrogenase activity    Catalysis of the reaction: 4-aminobutanal + NAD+ + H2O = 4-aminobutanoate + NADH + 2 H+.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016155    formyltetrahydrofolate dehydrogenase activity    Catalysis of the reaction: 10-formyltetrahydrofolate + H(2)O + NADP(+) = (6S)-5,6,7,8-tetrahydrofolate + CO(2) + H(+) + NADPH.
    GO:0016742    hydroxymethyl-, formyl- and related transferase activity    Catalysis of the transfer of a hydroxymethyl- or formyl group from one compound (donor) to another (acceptor).
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016620    oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
    GO:0032403    protein complex binding    Interacting selectively and non-covalently with any protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0009258    10-formyltetrahydrofolate catabolic process    The chemical reactions and pathways resulting in the breakdown of 10-formyltetrahydrofolate, the formylated derivative of tetrahydrofolate.
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0006730    one-carbon metabolic process    The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0046654    tetrahydrofolate biosynthetic process    The chemical reactions and pathways resulting in the formation of tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin group.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.

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  2o2q
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  AL1L1_RAT | P28037
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  1.5.1.6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AL1L1_RAT | P28037: 1s3i 2o2p 2o2r 3rhj 3rhl 3rhm 3rho 3rhp 3rhq 3rhr 4gnz 4go0 4go2

(-) Related Entries Specified in the PDB File

2o2p CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF RAT 10' FORMYLTETRAHYDROFOLATE DEHYDROGENASE
2o2r CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF RAT 10' FORMYLTETRAHYDROFOLATE DEHYDROGENASE IN COMPLEX WITH NADPH