Chain A from PDB Type:PROTEIN Length:117
aligned with BRD1_HUMAN | O95696 from UniProtKB/Swiss-Prot Length:1058
Alignment length:117
571 581 591 601 611 621 631 641 651 661 671
BRD1_HUMAN 562 LRLTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGLEEA 678
SCOP domains d3rcwa_ A: automated matches SCOP domains
CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...hhhhhhhhhhhhhhhhh................hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) -----------------BROMODOMAIN_2 PDB: A:579-649 UniProt: 579-649 ----------------------------- PROSITE (1)
PROSITE (2) ----------------------BROMODOMAIN_1 PDB: A:584-641 UniProt: 584-641 ------------------------------------- PROSITE (2)
Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
3rcw A 562 LRLTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGLEEA 678
571 581 591 601 611 621 631 641 651 661 671
Chain B from PDB Type:PROTEIN Length:118
aligned with BRD1_HUMAN | O95696 from UniProtKB/Swiss-Prot Length:1058
Alignment length:118
572 582 592 602 612 622 632 642 652 662 672
BRD1_HUMAN 563 RLTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGLEEASG 680
SCOP domains d3rcwb_ B: automated matches SCOP domains
CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..hhhhhhhhhhhhhhhhh................hhhhh.....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) ----------------BROMODOMAIN_2 PDB: B:579-649 UniProt: 579-649 ------------------------------- PROSITE (1)
PROSITE (2) ---------------------BROMODOMAIN_1 PDB: B:584-641 UniProt: 584-641 --------------------------------------- PROSITE (2)
Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
3rcw B 563 RLTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGLEEASG 680
572 582 592 602 612 622 632 642 652 662 672
Chain C from PDB Type:PROTEIN Length:111
aligned with BRD1_HUMAN | O95696 from UniProtKB/Swiss-Prot Length:1058
Alignment length:111
574 584 594 604 614 624 634 644 654 664 674
BRD1_HUMAN 565 TPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGL 675
SCOP domains d3rcwc_ C: automated matches SCOP domains
CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhhhhhhhh................hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) --------------BROMODOMAIN_2 PDB: C:579-649 UniProt: 579-649 -------------------------- PROSITE (1)
PROSITE (2) -------------------BROMODOMAIN_1 PDB: C:584-641 UniProt: 584-641 ---------------------------------- PROSITE (2)
Transcript --------------------------------------------------------------------------------------------------------------- Transcript
3rcw C 565 TPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGL 675
574 584 594 604 614 624 634 644 654 664 674
Chain D from PDB Type:PROTEIN Length:112
aligned with BRD1_HUMAN | O95696 from UniProtKB/Swiss-Prot Length:1058
Alignment length:112
573 583 593 603 613 623 633 643 653 663 673
BRD1_HUMAN 564 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGL 675
SCOP domains d3rcwd_ D: automated matches SCOP domains
CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhhhhhhhh.................hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) ---------------BROMODOMAIN_2 PDB: D:579-649 UniProt: 579-649 -------------------------- PROSITE (1)
PROSITE (2) --------------------BROMODOMAIN_1 PDB: D:584-641 UniProt: 584-641 ---------------------------------- PROSITE (2)
Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
3rcw D 564 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGL 675
573 583 593 603 613 623 633 643 653 663 673
Chain E from PDB Type:PROTEIN Length:116
aligned with BRD1_HUMAN | O95696 from UniProtKB/Swiss-Prot Length:1058
Alignment length:116
572 582 592 602 612 622 632 642 652 662 672
BRD1_HUMAN 563 RLTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGLEEA 678
SCOP domains d3rcwe_ E: automated matches SCOP domains
CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..hhhhhhhhhhhhhhhhh................hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) ----------------BROMODOMAIN_2 PDB: E:579-649 UniProt: 579-649 ----------------------------- PROSITE (1)
PROSITE (2) ---------------------BROMODOMAIN_1 PDB: E:584-641 UniProt: 584-641 ------------------------------------- PROSITE (2)
Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
3rcw E 563 RLTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGLEEA 678
572 582 592 602 612 622 632 642 652 662 672
Chain F from PDB Type:PROTEIN Length:113
aligned with BRD1_HUMAN | O95696 from UniProtKB/Swiss-Prot Length:1058
Alignment length:113
573 583 593 603 613 623 633 643 653 663 673
BRD1_HUMAN 564 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGLE 676
SCOP domains d3rcwf_ F: automated matches SCOP domains
CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .hhhhhhhhhhhhhhhh.................hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) ---------------BROMODOMAIN_2 PDB: F:579-649 UniProt: 579-649 --------------------------- PROSITE (1)
PROSITE (2) --------------------BROMODOMAIN_1 PDB: F:584-641 UniProt: 584-641 ----------------------------------- PROSITE (2)
Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
3rcw F 564 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGLE 676
573 583 593 603 613 623 633 643 653 663 673
Chain G from PDB Type:PROTEIN Length:112
aligned with BRD1_HUMAN | O95696 from UniProtKB/Swiss-Prot Length:1058
Alignment length:112
573 583 593 603 613 623 633 643 653 663 673
BRD1_HUMAN 564 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGL 675
SCOP domains d3rcwg_ G: automated matches SCOP domains
CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .hhhhhhhhhhhhhhhhh................hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) ---------------BROMODOMAIN_2 PDB: G:579-649 UniProt: 579-649 -------------------------- PROSITE (1)
PROSITE (2) --------------------BROMODOMAIN_1 PDB: G:584-641 UniProt: 584-641 ---------------------------------- PROSITE (2)
Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
3rcw G 564 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGL 675
573 583 593 603 613 623 633 643 653 663 673
Chain H from PDB Type:PROTEIN Length:108
aligned with BRD1_HUMAN | O95696 from UniProtKB/Swiss-Prot Length:1058
Alignment length:108
575 585 595 605 615 625 635 645 655 665
BRD1_HUMAN 566 PLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSI 673
SCOP domains d3rcwh_ H: automated matches SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
Pfam domains (1) -----Bromodomain-3rcwH01 H:571-654 ------------------- Pfam domains (1)
Pfam domains (2) -----Bromodomain-3rcwH02 H:571-654 ------------------- Pfam domains (2)
Pfam domains (3) -----Bromodomain-3rcwH03 H:571-654 ------------------- Pfam domains (3)
Pfam domains (4) -----Bromodomain-3rcwH04 H:571-654 ------------------- Pfam domains (4)
Pfam domains (5) -----Bromodomain-3rcwH05 H:571-654 ------------------- Pfam domains (5)
Pfam domains (6) -----Bromodomain-3rcwH06 H:571-654 ------------------- Pfam domains (6)
Pfam domains (7) -----Bromodomain-3rcwH07 H:571-654 ------------------- Pfam domains (7)
Pfam domains (8) -----Bromodomain-3rcwH08 H:571-654 ------------------- Pfam domains (8)
Sec.struct. author hhhhhhhhhhhhhhh.................hhhhhh....hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE (1) -------------BROMODOMAIN_2 PDB: H:579-649 UniProt: 579-649 ------------------------ PROSITE (1)
PROSITE (2) ------------------BROMODOMAIN_1 PDB: H:584-641 UniProt: 584-641 -------------------------------- PROSITE (2)
Transcript ------------------------------------------------------------------------------------------------------------ Transcript
3rcw H 566 PLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSI 673
575 585 595 605 615 625 635 645 655 665
Legend: |
|
→ Mismatch |
(orange background) |
|
- |
→ Gap |
(green background, '-', border residues have a numbering label) |
|
|
→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
|
x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
|
extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |