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(-) Description

Title :  CRYSTAL STRUCTURE OF THE BROMODOMAIN OF HUMAN BRD1
 
Authors :  P. Filippakopoulos, T. Keates, S. Picaud, I. Felletar, A. C. W. Pike, T. F. Von Delf, C. H. Arrowsmith, A. M. Edwards, J. Weigelt, C. Bountra, S Structural Genomics Consortium (Sgc)
Date :  31 Mar 11  (Deposition) - 01 Jun 11  (Release) - 11 Apr 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.21
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Keywords :  Transcription, Bromodomain, Structural Genomics, Structural Genomics Consortium, Sgc (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. Filippakopoulos, S. Picaud, M. Mangos, T. Keates, J. P. Lambert, D. Barsyte-Lovejoy, I. Felletar, R. Volkmer, S. Muller, T. Pawson, A. C. Gingras, C. H. Arrowsmith, S. Knapp
Histone Recognition And Large-Scale Structural Analysis Of The Human Bromodomain Family.
Cell(Cambridge, Mass. ) V. 149 214 2012
PubMed-ID: 22464331  |  Reference-DOI: 10.1016/J.CELL.2012.02.013

(-) Compounds

Molecule 1 - BROMODOMAIN-CONTAINING PROTEIN 1
    ChainsA, B, C, D, E, F, G, H
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPNIC28-BSA4
    Expression System StrainBL21(DE3)-R3
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneBRD1, BRL, BRPF2
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymBR140-LIKE PROTEIN, BROMODOMAIN AND PHD FINGER-CONTAINING PROTEIN 2

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)A       
Biological Unit 2 (1x) B      
Biological Unit 3 (1x)  C     
Biological Unit 4 (1x)   D    
Biological Unit 5 (1x)    E   
Biological Unit 6 (1x)     F  
Biological Unit 7 (1x)      G 
Biological Unit 8 (1x)       H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2EDO2Ligand/Ion1,2-ETHANEDIOL
3MB31Ligand/Ion1-METHYLPYRROLIDIN-2-ONE
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3MB3-1Ligand/Ion1-METHYLPYRROLIDIN-2-ONE
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3MB3-1Ligand/Ion1-METHYLPYRROLIDIN-2-ONE
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3MB31Ligand/Ion1-METHYLPYRROLIDIN-2-ONE
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3MB3-1Ligand/Ion1-METHYLPYRROLIDIN-2-ONE
Biological Unit 5 (0, 0)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3MB3-1Ligand/Ion1-METHYLPYRROLIDIN-2-ONE
Biological Unit 6 (1, 1)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MB3-1Ligand/Ion1-METHYLPYRROLIDIN-2-ONE
Biological Unit 7 (1, 1)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MB3-1Ligand/Ion1-METHYLPYRROLIDIN-2-ONE
Biological Unit 8 (1, 1)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3MB3-1Ligand/Ion1-METHYLPYRROLIDIN-2-ONE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH C:132 , ILE C:586 , PHE C:587 , VAL C:591 , CYS C:638 , ASN C:642 , PHE C:648BINDING SITE FOR RESIDUE MB3 C 1
2AC2SOFTWAREARG D:615 , GLU D:626 , GLU D:629 , TYR H:649BINDING SITE FOR RESIDUE ACT D 1
3AC3SOFTWARESER E:573 , GLN E:577 , LEU F:570 , SER F:573 , GLN F:577BINDING SITE FOR RESIDUE EDO F 2
4AC4SOFTWAREASN G:623 , LEU G:624 , HIS G:625 , ARG G:667 , VAL G:670BINDING SITE FOR RESIDUE EDO G 1
5AC5SOFTWAREPRO H:590 , VAL H:591 , PRO H:606BINDING SITE FOR RESIDUE ACT H 2

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3RCW)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Glu A:677 -Ala A:678

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RCW)

(-) PROSITE Motifs  (2, 16)

Asymmetric Unit (2, 16)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BROMODOMAIN_2PS50014 Bromodomain profile.BRD1_HUMAN579-649
 
 
 
 
 
 
 
  8A:579-649
B:579-649
C:579-649
D:579-649
E:579-649
F:579-649
G:579-649
H:579-649
2BROMODOMAIN_1PS00633 Bromodomain signature.BRD1_HUMAN584-641
 
 
 
 
 
 
 
  8A:584-641
B:584-641
C:584-641
D:584-641
E:584-641
F:584-641
G:584-641
H:584-641
Biological Unit 1 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BROMODOMAIN_2PS50014 Bromodomain profile.BRD1_HUMAN579-649
 
 
 
 
 
 
 
  1A:579-649
-
-
-
-
-
-
-
2BROMODOMAIN_1PS00633 Bromodomain signature.BRD1_HUMAN584-641
 
 
 
 
 
 
 
  1A:584-641
-
-
-
-
-
-
-
Biological Unit 2 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BROMODOMAIN_2PS50014 Bromodomain profile.BRD1_HUMAN579-649
 
 
 
 
 
 
 
  1-
B:579-649
-
-
-
-
-
-
2BROMODOMAIN_1PS00633 Bromodomain signature.BRD1_HUMAN584-641
 
 
 
 
 
 
 
  1-
B:584-641
-
-
-
-
-
-
Biological Unit 3 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BROMODOMAIN_2PS50014 Bromodomain profile.BRD1_HUMAN579-649
 
 
 
 
 
 
 
  1-
-
C:579-649
-
-
-
-
-
2BROMODOMAIN_1PS00633 Bromodomain signature.BRD1_HUMAN584-641
 
 
 
 
 
 
 
  1-
-
C:584-641
-
-
-
-
-
Biological Unit 4 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BROMODOMAIN_2PS50014 Bromodomain profile.BRD1_HUMAN579-649
 
 
 
 
 
 
 
  1-
-
-
D:579-649
-
-
-
-
2BROMODOMAIN_1PS00633 Bromodomain signature.BRD1_HUMAN584-641
 
 
 
 
 
 
 
  1-
-
-
D:584-641
-
-
-
-
Biological Unit 5 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BROMODOMAIN_2PS50014 Bromodomain profile.BRD1_HUMAN579-649
 
 
 
 
 
 
 
  1-
-
-
-
E:579-649
-
-
-
2BROMODOMAIN_1PS00633 Bromodomain signature.BRD1_HUMAN584-641
 
 
 
 
 
 
 
  1-
-
-
-
E:584-641
-
-
-
Biological Unit 6 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BROMODOMAIN_2PS50014 Bromodomain profile.BRD1_HUMAN579-649
 
 
 
 
 
 
 
  1-
-
-
-
-
F:579-649
-
-
2BROMODOMAIN_1PS00633 Bromodomain signature.BRD1_HUMAN584-641
 
 
 
 
 
 
 
  1-
-
-
-
-
F:584-641
-
-
Biological Unit 7 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BROMODOMAIN_2PS50014 Bromodomain profile.BRD1_HUMAN579-649
 
 
 
 
 
 
 
  1-
-
-
-
-
-
G:579-649
-
2BROMODOMAIN_1PS00633 Bromodomain signature.BRD1_HUMAN584-641
 
 
 
 
 
 
 
  1-
-
-
-
-
-
G:584-641
-
Biological Unit 8 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BROMODOMAIN_2PS50014 Bromodomain profile.BRD1_HUMAN579-649
 
 
 
 
 
 
 
  1-
-
-
-
-
-
-
H:579-649
2BROMODOMAIN_1PS00633 Bromodomain signature.BRD1_HUMAN584-641
 
 
 
 
 
 
 
  1-
-
-
-
-
-
-
H:584-641

(-) Exons   (0, 0)

(no "Exon" information available for 3RCW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:117
 aligned with BRD1_HUMAN | O95696 from UniProtKB/Swiss-Prot  Length:1058

    Alignment length:117
                                   571       581       591       601       611       621       631       641       651       661       671       
           BRD1_HUMAN   562 LRLTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGLEEA 678
               SCOP domains d3rcwa_ A: automated matches                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh................hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------BROMODOMAIN_2  PDB: A:579-649 UniProt: 579-649                         ----------------------------- PROSITE (1)
                PROSITE (2) ----------------------BROMODOMAIN_1  PDB: A:584-641 UniProt: 584-641            ------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 3rcw A 562 LRLTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGLEEA 678
                                   571       581       591       601       611       621       631       641       651       661       671       

Chain B from PDB  Type:PROTEIN  Length:118
 aligned with BRD1_HUMAN | O95696 from UniProtKB/Swiss-Prot  Length:1058

    Alignment length:118
                                   572       582       592       602       612       622       632       642       652       662       672        
           BRD1_HUMAN   563 RLTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGLEEASG 680
               SCOP domains d3rcwb_ B: automated matches                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh................hhhhh.....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------BROMODOMAIN_2  PDB: B:579-649 UniProt: 579-649                         ------------------------------- PROSITE (1)
                PROSITE (2) ---------------------BROMODOMAIN_1  PDB: B:584-641 UniProt: 584-641            --------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 3rcw B 563 RLTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGLEEASG 680
                                   572       582       592       602       612       622       632       642       652       662       672        

Chain C from PDB  Type:PROTEIN  Length:111
 aligned with BRD1_HUMAN | O95696 from UniProtKB/Swiss-Prot  Length:1058

    Alignment length:111
                                   574       584       594       604       614       624       634       644       654       664       674 
           BRD1_HUMAN   565 TPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGL 675
               SCOP domains d3rcwc_ C: automated matches                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh................hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------BROMODOMAIN_2  PDB: C:579-649 UniProt: 579-649                         -------------------------- PROSITE (1)
                PROSITE (2) -------------------BROMODOMAIN_1  PDB: C:584-641 UniProt: 584-641            ---------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 3rcw C 565 TPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGL 675
                                   574       584       594       604       614       624       634       644       654       664       674 

Chain D from PDB  Type:PROTEIN  Length:112
 aligned with BRD1_HUMAN | O95696 from UniProtKB/Swiss-Prot  Length:1058

    Alignment length:112
                                   573       583       593       603       613       623       633       643       653       663       673  
           BRD1_HUMAN   564 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGL 675
               SCOP domains d3rcwd_ D: automated matches                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh.................hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------BROMODOMAIN_2  PDB: D:579-649 UniProt: 579-649                         -------------------------- PROSITE (1)
                PROSITE (2) --------------------BROMODOMAIN_1  PDB: D:584-641 UniProt: 584-641            ---------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 3rcw D 564 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGL 675
                                   573       583       593       603       613       623       633       643       653       663       673  

Chain E from PDB  Type:PROTEIN  Length:116
 aligned with BRD1_HUMAN | O95696 from UniProtKB/Swiss-Prot  Length:1058

    Alignment length:116
                                   572       582       592       602       612       622       632       642       652       662       672      
           BRD1_HUMAN   563 RLTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGLEEA 678
               SCOP domains d3rcwe_ E: automated matches                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh................hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------BROMODOMAIN_2  PDB: E:579-649 UniProt: 579-649                         ----------------------------- PROSITE (1)
                PROSITE (2) ---------------------BROMODOMAIN_1  PDB: E:584-641 UniProt: 584-641            ------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 3rcw E 563 RLTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGLEEA 678
                                   572       582       592       602       612       622       632       642       652       662       672      

Chain F from PDB  Type:PROTEIN  Length:113
 aligned with BRD1_HUMAN | O95696 from UniProtKB/Swiss-Prot  Length:1058

    Alignment length:113
                                   573       583       593       603       613       623       633       643       653       663       673   
           BRD1_HUMAN   564 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGLE 676
               SCOP domains d3rcwf_ F: automated matches                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.................hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------BROMODOMAIN_2  PDB: F:579-649 UniProt: 579-649                         --------------------------- PROSITE (1)
                PROSITE (2) --------------------BROMODOMAIN_1  PDB: F:584-641 UniProt: 584-641            ----------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 3rcw F 564 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGLE 676
                                   573       583       593       603       613       623       633       643       653       663       673   

Chain G from PDB  Type:PROTEIN  Length:112
 aligned with BRD1_HUMAN | O95696 from UniProtKB/Swiss-Prot  Length:1058

    Alignment length:112
                                   573       583       593       603       613       623       633       643       653       663       673  
           BRD1_HUMAN   564 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGL 675
               SCOP domains d3rcwg_ G: automated matches                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh................hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------BROMODOMAIN_2  PDB: G:579-649 UniProt: 579-649                         -------------------------- PROSITE (1)
                PROSITE (2) --------------------BROMODOMAIN_1  PDB: G:584-641 UniProt: 584-641            ---------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 3rcw G 564 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGL 675
                                   573       583       593       603       613       623       633       643       653       663       673  

Chain H from PDB  Type:PROTEIN  Length:108
 aligned with BRD1_HUMAN | O95696 from UniProtKB/Swiss-Prot  Length:1058

    Alignment length:108
                                   575       585       595       605       615       625       635       645       655       665        
           BRD1_HUMAN   566 PLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSI 673
               SCOP domains d3rcwh_ H: automated matches                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) -----Bromodomain-3rcwH01 H:571-654                                                       ------------------- Pfam domains (1)
           Pfam domains (2) -----Bromodomain-3rcwH02 H:571-654                                                       ------------------- Pfam domains (2)
           Pfam domains (3) -----Bromodomain-3rcwH03 H:571-654                                                       ------------------- Pfam domains (3)
           Pfam domains (4) -----Bromodomain-3rcwH04 H:571-654                                                       ------------------- Pfam domains (4)
           Pfam domains (5) -----Bromodomain-3rcwH05 H:571-654                                                       ------------------- Pfam domains (5)
           Pfam domains (6) -----Bromodomain-3rcwH06 H:571-654                                                       ------------------- Pfam domains (6)
           Pfam domains (7) -----Bromodomain-3rcwH07 H:571-654                                                       ------------------- Pfam domains (7)
           Pfam domains (8) -----Bromodomain-3rcwH08 H:571-654                                                       ------------------- Pfam domains (8)
         Sec.struct. author hhhhhhhhhhhhhhh.................hhhhhh....hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) -------------BROMODOMAIN_2  PDB: H:579-649 UniProt: 579-649                         ------------------------ PROSITE (1)
                PROSITE (2) ------------------BROMODOMAIN_1  PDB: H:584-641 UniProt: 584-641            -------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 3rcw H 566 PLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSI 673
                                   575       585       595       605       615       625       635       645       655       665        

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(-) SCOP Domains  (1, 8)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RCW)

(-) Pfam Domains  (1, 8)

Asymmetric Unit

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (BRD1_HUMAN | O95696)
molecular function
    GO:0042393    histone binding    Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0043966    histone H3 acetylation    The modification of histone H3 by the addition of an acetyl group.
    GO:0051602    response to electrical stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electrical stimulus.
    GO:0035902    response to immobilization stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of being rendered immobile.
cellular component
    GO:0070776    MOZ/MORF histone acetyltransferase complex    A histone acetyltransferase complex that has histone H3 acetyltransferase and coactivator activities. Subunits of the human complex include MYST3/MOZ, MYST4/MORF, ING5, EAF6 and one of BRPF1, BRD1/BRPF2 and BRPF3.
    GO:0030425    dendrite    A neuron projection that has a short, tapering, often branched, morphology, receives and integrates signals from other neurons or from sensory stimuli, and conducts a nerve impulse towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0043204    perikaryon    The portion of the cell soma (neuronal cell body) that excludes the nucleus.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BRD1_HUMAN | O956962ku3 2l43 2lq6 3lyi 4z02 5ame 5amf 5fg6 5gk9 5n49 5pnx 5pny 5pnz 5po0 5po1 5po2 5po3 5po4 5po5 5po6 5po7 5po8 5po9 5poa 5pob 5poc 5pod 5poe 5pof 5pog 5poh 5poi 5poj 5pok 5pol 5pom 5pon 5poo 5pop 5poq 5por 5pos 5pot 5pou 5pov 5pow 5pox 5poy 5poz 5pp0 5pp1 5pp2 5pp3 5pp4 5pp5 5pp6 5pp7 5pp8 5pp9 5ppa 5ppb 5ppc 5ppd 5ppe 5ppf 5ppg 5pph 5ppi 5ppj 5ppk 5ppl 5ppm 5ppn 5ppo 5ppp 5ppq 5ppr 5pps 5ppt 5ppu 5ppv 5ppw 5ppx 5ppy 5ppz 5pq0 5pq1 5pq2 5pq3 5pq4 5pq5 5pq6 5pq7 5pq8 5pq9 5pqa 5pqb 5pqc 5pqd 5pqe 5pqf 5pqg 5pqh 5pqi 5pqj 5pqk 5pql 5pqm 5pqn 5pqo 5pqp 5pqq 5pqr 5pqs 5pqt 5pqu 5pqv 5pqw 5pqx 5pqy 5pqz 5pr0 5pr1 5pr2 5pr4 5pr5 5pr6 5pr7 5pr8 5pr9 5pra 5prb 5prd 5pre 5prf 5prg 5prh 5pri 5prj 5prk 5prl 5prm 5pro 5prp 5prq 5prr 5prs 5prt 5pru 5prv 5prw 5prx 5pry 5prz 5ps0 5ps1 5ps2 5ps3 5ps4 5ps5 5ps6 5ps7 5ps8 5ps9 5psa 5psb 5psc 5psd 5pse 5psf 5psg 5psh 5psi 5psj 5psk 5psl 5psm 5psn 5pso 5psp 5psq 5psr 5pss 5pst 5psu 5psv 5psw 5psx 5psy 5psz 5pt0 5pt1 5pt2 5pt3 5pt4 5pt5 5pt6 5pt7 5pt8 5pt9 5pta 5ptb 5ptc 5pte 5ptf 5ptg 5pth 5ptj 5ptk 5ptl 5ptm 5ptn 5pto 5ptq 5ptr 5pts 5ptt 5ptu 5ptv 5ptw 5ptx 5pty 5ptz 5pu0 5pu1 5pu2 5pu3 5pu4 5pu5 5pu6 5pu7 5pu8 5pu9 5pua 5pub 5puc 5pud 5pue 5puf 5pug 5puh 5pui 5puj 5puk 5pul 5pum 5pun 5puo 5pup 5puq 5pur 5pus 5put 5puu 5puv 5puw 5pux 5puy 5puz 5pv0 5pv1 5pv2 5pv3 5pv4 5pv5 5pv6 5pv7 5pv8 5pv9 5pva 5pvb 5pvc 5pvd 5pve 5pvf 5pvg 5pvh 5pvi 5pvj 5pvk 5pvl 5pvm 5pvn 5pvo 5pvp 5pvq 5pvr 5pvs 5pvt 5pvu 5pvv 5pvw 5pvx 5pvy 5pvz 5pw0 5pw1 5pw2 5pw3 5pw4 5pw5 5pw6 5pw7 5pw8 5pw9 5pwa 5pwb

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3RCW)