3R1M - JenaLib

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Title :   STRUCTURE OF BIFUNCTIONAL FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE/PHOSPHATASE (ALDOLASE FORM)

Authors :   S. Fushinobu, H. Nishimasu, D. Hattori, H. -J. Song, T. Wakagi

Date :   10 Mar 11 (Deposition) - 12 Oct 11 (Release) - 08 Feb 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.50

Chains :   Asym. Unit : A
Biol. Unit 1: A  (8x)

Keywords :   Sulfolobus Fructose-1, 6-Bisphosphatase-Like Fold, Hydrolase/Aldolase, Mg Binding, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Fushinobu, H. Nishimasu, D. Hattori, H. -J. Song, T. Wakagi
Structural Basis For The Bifunctionality Of Fructose-1, 6-Bisphosphate Aldolase/Phosphatase.
Nature V. 478 538 2011
PubMed-ID: 21983966 | Reference-DOI: 10.1038/NATURE10457

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN ST0318
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET17B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	ST0318
	Organism Scientific	:	SULFOLOBUS TOKODAII
	Organism Taxid	:	273063
	Strain	:	7

		1
Asymmetric Unit	:	A
Biological Unit 1 (8x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 5)

No.	Name	Count	Type	Full Name
1	13P	1	Ligand/Ion	1,3-DIHYDROXYACETONEPHOSPHATE
2	MG	3	Ligand/Ion	MAGNESIUM ION
3	MPD	1	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL

Biological Unit 1 (2, 16)

No.	Name	Count	Type	Full Name
1	13P	8	Ligand/Ion	1,3-DIHYDROXYACETONEPHOSPHATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	MPD	8	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:12 , HIS A:19 , ASP A:53 , GLN A:95 , ASP A:132 , LYS A:133 , TYR A:229 , GLY A:231 , LYS A:232 , ASP A:234 , ARG A:266 , ASP A:287 , HOH A:386 , HOH A:388 , MG A:402 , MG A:403 , MG A:404 , HOH A:590	BINDING SITE FOR RESIDUE 13P A 401
2	AC2	SOFTWARE	LYS A:232 , ASP A:234 , HOH A:386 , HOH A:388 , HOH A:389 , 13P A:401 , MG A:403	BINDING SITE FOR RESIDUE MG A 402
3	AC3	SOFTWARE	ASP A:53 , ASP A:54 , ASP A:132 , ASP A:234 , HOH A:386 , 13P A:401 , MG A:402	BINDING SITE FOR RESIDUE MG A 403
4	AC4	SOFTWARE	ASP A:12 , HIS A:19 , ASP A:53 , GLN A:95 , HOH A:387 , 13P A:401	BINDING SITE FOR RESIDUE MG A 404
5	AC5	SOFTWARE	HIS A:23 , PRO A:24 , HOH A:559	BINDING SITE FOR RESIDUE MPD A 405

(no "SS Bond" information available for 3R1M)

Asymmetric Unit

No.	Residues
1	Ala A:183	-	Pro A:184
2	Gly A:288	-	Pro A:289
3	Gly A:306	-	Pro A:307
4	Met A:337	-	Pro A:338

(no "SAP(SNP)/Variant" information available for 3R1M)

(no "PROSITE Motif" information available for 3R1M)

(no "Exon" information available for 3R1M)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:356
 aligned with FBPAP_SULTO | F9VMT6 from UniProtKB/Swiss-Prot  Length:384

    Alignment length:363
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360   
          FBPAP_SULTO     1 MKTTISVIKADIGSLAGHHIVHPDTMAAANKVLASAKEQGIILDYYITHVGDDLQLIMTHTRGELDTKVHETAWNAFKEAAKVAKDLGLYAAGQDLLSDSFSGNVRGLGPGVAEMEIEERASEPIAIFMADKTEPGAYNLPLYKMFADPFNTPGLVIDPTMHGGFKFEVLDVYQGEAVMLSAPQEIYDLLALIGTPARYVIRRVYRNEDNLLAAVVSIERLNLIAGKYVGKDDPVMIVRLQHGLPALGEALEAFAFPHLVPGWMRGSHYGPLMPVSQRDAKATRFDGPPRLLGLGFNVKNGRLVGPTDLFDDPAFDETRRLANIVADYMRRHGPFMPHRLEPTEMEYTTLPLILEKLKDRFKK 363
               SCOP domains d3r1ma_ A: ST0318                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee...........hhhhhhhhhhhhhhhhhh....eeeeeee..eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh.......................eeeeeee......eeeeeeee..hhhhhhhhhhhhhhh....hhhhhh......eeeeeee....eeeeee...hhhhhhhhhh....eeeeeeee.....eeeee...hhhhhhh........eeeee......hhhhhhhh.....eeeehhhhheeee.eee.......hhhhh..eeeeeeeeee..eeeeeee...hhhhhhhhhhhhhhhhhhhh.........hhhhhh......-------.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3r1m A   2 MKTTISVIKADIGSLAGHHIVHPDTMAAANKVLASAKEQGIILDYYITHVGDDLQLIMTHTRGELDTKVHETAWNAFKEAAKVAKDLGLYAAGQDLLSDSFSGNVRGLGPGVAEMEIEERASEPIAIFMADKTEPGAYNLPLYKMFADPFNTPGLVIDPTMHGGFKFEVLDVYQGEAVMLSAPQEIYDLLALIGTPARYVIRRVYRNEDNLLAAVVSIERLNLIAGKYVGKDDPVMIVRLQHGLPALGEALEAFAFPHLVPGWMRGSHYGPLMPVSQRDAKATRFDGPPRLLGLGFNVKNGRLVGPTDLFDDPAFDETRRLANIVADYMRRHGPFMPHRLEPTEMEYTTLPL-------RFKK 364
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351 |     361   
                                                                                                                                                                                                                                                                                                                                                                                         353     361

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Sulfolobus fructose-1,6-bisphosphatase-like (8)

Superfamily: Sulfolobus fructose-1,6-bisphosphatase-like (8)

Family: Sulfolobus fructose-1,6-bisphosphatase-like (8)

Protein domain: ST0318 (2)

Sulfolobus tokodaii [TaxId: 111955] (2)

d3r1ma_

(no "CATH Domain" information available for 3R1M)

(no "Pfam Domain" information available for 3R1M)

Asymmetric Unit(hide GO term definitions)

Chain A (FBPAP_SULTO | F9VMT6)

molecular function
	GO:0042132	fructose 1,6-bisphosphate 1-phosphatase activity	Catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0016311	dephosphorylation	The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.

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	Cis Peptide Bonds
		Ala A:183 - Pro A:184	[ RasMol ]
		Gly A:288 - Pro A:289	[ RasMol ]
		Gly A:306 - Pro A:307	[ RasMol ]
		Met A:337 - Pro A:338	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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	FBPAP_SULTO \| F9VMT6	:	1umg

1umg	THE SAME PROTEIN IN A FBPASE MODE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 5)

Sites (5, 5)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

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