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Title :   CRYSTAL STRUCTURE OF FRUCTOSE-1,6-BISPHOSPHATASE

Authors :   H. Nishimasu, S. Fushinobu, H. Shoun, T. Wakagi

Date :   30 Sep 03 (Deposition) - 13 Jul 04 (Release) - 21 Dec 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A
Biol. Unit 1: A  (8x)

Keywords :   Fructose-1, 6-Bisphosphatase, Hyperthermophilic Archaea, Alpha-Beta- Beta-Alpha Four Layer Sandwich, Magnesium Ion, Phosphatase, Octamer, Three Metal-Assisted Mechanism, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Nishimasu, S. Fushinobu, H. Shoun, T. Wakagi
The First Crystal Structure Of The Novel Class Of Fructose-1, 6-Bisphosphatase Present In Thermophilic Archaea
Structure V. 12 949 2004
PubMed-ID: 15274916 | Reference-DOI: 10.1016/J.STR.2004.03.026

Molecule 1 - 385AA LONG CONSERVED HYPOTHETICAL PROTEIN
	Chains	:	A
	EC Number	:	3.1.3.11
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET17B
	Expression System Strain	:	BL21 (DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 3-364
	Gene	:	ST0318
	Organism Scientific	:	SULFOLOBUS TOKODAII STR. 7
	Organism Taxid	:	273063
	Strain	:	STRAIN 7
	Synonym	:	FRUCTOSE-1,6-BISPHOSPHATASE

		1
Asymmetric Unit	:	A
Biological Unit 1 (8x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 6)

No.	Name	Count	Type	Full Name
1	2FP	1	Ligand/Ion	1,6-FRUCTOSE DIPHOSPHATE (LINEAR FORM)
2	MG	4	Ligand/Ion	MAGNESIUM ION
3	MPD	1	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL

Biological Unit 1 (2, 16)

No.	Name	Count	Type	Full Name
1	2FP	8	Ligand/Ion	1,6-FRUCTOSE DIPHOSPHATE (LINEAR FORM)
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	MPD	8	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:233 , 2FP A:400 , MG A:402 , HOH A:408 , HOH A:409 , HOH A:410	BINDING SITE FOR RESIDUE MG A 401
2	AC2	SOFTWARE	ASP A:233 , ASP A:234 , 2FP A:400 , MG A:401 , MG A:403 , HOH A:406 , HOH A:411 , HOH A:412	BINDING SITE FOR RESIDUE MG A 402
3	AC3	SOFTWARE	ASP A:53 , ASP A:54 , ASP A:132 , ASP A:234 , 2FP A:400 , MG A:402 , HOH A:406	BINDING SITE FOR RESIDUE MG A 403
4	AC4	SOFTWARE	ASP A:12 , HIS A:19 , ASP A:53 , GLN A:95 , 2FP A:400 , HOH A:407	BINDING SITE FOR RESIDUE MG A 404
5	AC5	SOFTWARE	ASP A:12 , HIS A:19 , ASP A:53 , TYR A:91 , GLN A:95 , SER A:103 , GLY A:104 , ASN A:105 , ASP A:132 , LYS A:133 , ASP A:233 , ASP A:234 , GLN A:242 , HIS A:243 , ALA A:247 , TRP A:264 , MET A:265 , ARG A:266 , GLY A:267 , ASP A:287 , TYR A:348 , MG A:401 , MG A:402 , MG A:403 , MG A:404 , HOH A:406 , HOH A:408 , HOH A:409 , HOH A:410 , HOH A:457 , HOH A:472	BINDING SITE FOR RESIDUE 2FP A 400
6	AC6	SOFTWARE	ASP A:317 , ARG A:320 , ASN A:324 , HOH A:421 , HOH A:526 , HOH A:653	BINDING SITE FOR RESIDUE MPD A 405

(no "SS Bond" information available for 1UMG)

Asymmetric Unit

No.	Residues
1	Ala A:183	-	Pro A:184
2	Gly A:288	-	Pro A:289
3	Gly A:306	-	Pro A:307
4	Met A:337	-	Pro A:338

(no "SAP(SNP)/Variant" information available for 1UMG)

(no "PROSITE Motif" information available for 1UMG)

(no "Exon" information available for 1UMG)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:359
 aligned with FBPAP_SULTO | F9VMT6 from UniProtKB/Swiss-Prot  Length:384

    Alignment length:362
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361  
          FBPAP_SULTO     2 KTTISVIKADIGSLAGHHIVHPDTMAAANKVLASAKEQGIILDYYITHVGDDLQLIMTHTRGELDTKVHETAWNAFKEAAKVAKDLGLYAAGQDLLSDSFSGNVRGLGPGVAEMEIEERASEPIAIFMADKTEPGAYNLPLYKMFADPFNTPGLVIDPTMHGGFKFEVLDVYQGEAVMLSAPQEIYDLLALIGTPARYVIRRVYRNEDNLLAAVVSIERLNLIAGKYVGKDDPVMIVRLQHGLPALGEALEAFAFPHLVPGWMRGSHYGPLMPVSQRDAKATRFDGPPRLLGLGFNVKNGRLVGPTDLFDDPAFDETRRLANIVADYMRRHGPFMPHRLEPTEMEYTTLPLILEKLKDRFKK 363
               SCOP domains d1umga_ A: ST0318                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee...........hhhhhhhhhhhhhhhhhh....eeeeeee..eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh.......................eeeeeee......eeeeeeee..hhhhhhhhhhhhhhh....hhhhhhhhhh..eeeeeee....eeeeee...hhhhhhhhhh....eeeeeeee.....eeeee........---.......eeeee......hhhhhhhh.....eeeehhhhheeee.eee.......hhhhh..eeeeeeeeee..eeeeeee...hhhhhhhhhhhhhhhhhhhh.........hhhhh...hhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1umg A   3 KTTISVIKADIGSLAGHHIVHPDTMAAANKVLASAKEQGIILDYYITHVGDDLQLIMTHTRGELDTKVHETAWNAFKEAAKVAKDLGLYAAGQDLLSDSFSGNVRGLGPGVAEMEIEERASEPIAIFMADKTEPGAYNLPLYKMFADPFNTPGLVIDPTMHGGFKFEVLDVYQGEAVMLSAPQEIYDLLALIGTPARYVIRRVYRNEDNLLAAVVSIERLNLI---YVGKDDPVMIVRLQHGLPALGEALEAFAFPHLVPGWMRGSHYGPLMPVSQRDAKATRFDGPPRLLGLGFNVKNGRLVGPTDLFDDPAFDETRRLANIVADYMRRHGPFMPHRLEPTEMEYTTLPLILEKLKDRFKK 364
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222  |   |232       242       252       262       272       282       292       302       312       322       332       342       352       362  
                                                                                                                                                                                                                                                        225 229

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Sulfolobus fructose-1,6-bisphosphatase-like (8)

Superfamily: Sulfolobus fructose-1,6-bisphosphatase-like (8)

Family: Sulfolobus fructose-1,6-bisphosphatase-like (8)

Protein domain: ST0318 (2)

Sulfolobus tokodaii [TaxId: 111955] (2)

d1umga_

(no "CATH Domain" information available for 1UMG)

(no "Pfam Domain" information available for 1UMG)

Asymmetric Unit(hide GO term definitions)

Chain A (FBPAP_SULTO | F9VMT6)

molecular function
	GO:0042132	fructose 1,6-bisphosphate 1-phosphatase activity	Catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0016311	dephosphorylation	The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.

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	Cis Peptide Bonds
		Ala A:183 - Pro A:184	[ RasMol ]
		Gly A:288 - Pro A:289	[ RasMol ]
		Gly A:306 - Pro A:307	[ RasMol ]
		Met A:337 - Pro A:338	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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	FBPAP_SULTO \| F9VMT6	:	3r1m

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Description

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Ligands, Modified Residues, Ions (3, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

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