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(-) Description

Title :  STRUCTURE OF BACULOVIRUS SULFHYDRYL OXIDASE AC92
 
Authors :  M. Hakim, D. Fass
Date :  07 Mar 11  (Deposition) - 15 Feb 12  (Release) - 15 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.14
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Flavin Adenine Dinucleotide, Viral Protein, 4-Helix Bundle, 5-Helix Bundle, Sulfhydryl Oxidase, Oxidoreductase, Nucleus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Hakim, A. Mandelbaum, D. Fass
Structure Of A Baculovirus Sulfhydryl Oxidase, A Highly Divergent Member Of The Erv Flavoenzyme Family.
J. Virol. V. 85 9406 2011
PubMed-ID: 21752922  |  Reference-DOI: 10.1128/JVI.05149-11

(-) Compounds

Molecule 1 - BACULOVIRUS SULFHYDRYL OXIDASE AC92
    Chains: A, B
    EC Number: 1.8.3.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: AC92, P33
    Organism Common: ACMNPV
    Organism Scientific: AUTOGRAPHA CALIFORNICA NUCLEOPOLYHEDROVIRUS
    Organism Taxid: 46015
    Synonym: P33

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2IMD1Ligand/IonIMIDAZOLE
3PO42Ligand/IonPHOSPHATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:12 , TYR A:15 , MET A:52 , LYS A:53 , PHE A:115BINDING SITE FOR RESIDUE IMD A 261
2AC2SOFTWAREARG A:10 , PHE A:106 , ILE A:109 , TRP A:110 , HIS A:114 , MET A:157 , CYS A:158 , HIS A:161 , MET A:222 , HIS A:225 , ASN A:226 , ILE A:228 , ASN A:229 , LYS A:232 , GLN A:235 , ARG A:236 , MET A:247 , TYR A:252 , HOH A:263 , HOH A:280BINDING SITE FOR RESIDUE FAD A 334
3AC3SOFTWARETYR A:54 , ASN A:93 , LEU A:94 , ARG A:95 , SER A:96BINDING SITE FOR RESIDUE PO4 A 262
4AC4SOFTWAREARG B:10 , PHE B:106 , THR B:107 , ILE B:109 , TRP B:110 , MET B:113 , HIS B:114 , PHE B:151 , MET B:157 , CYS B:158 , HIS B:162 , TYR B:163 , MET B:222 , HIS B:225 , ASN B:226 , ILE B:228 , ASN B:229 , LYS B:232 , GLN B:235 , MET B:247 , TYR B:252 , HOH B:300 , HOH B:302 , HOH B:304 , HOH B:305 , HOH B:333BINDING SITE FOR RESIDUE FAD B 334
5AC5SOFTWARETYR B:54 , ASN B:93 , LEU B:94 , ARG B:95 , SER B:96BINDING SITE FOR RESIDUE PO4 B 261

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:155 -A:158
2B:155 -B:158

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3QZY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3QZY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3QZY)

(-) Exons   (0, 0)

(no "Exon" information available for 3QZY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:240
 aligned with FLSO_NPVAC | P41480 from UniProtKB/Swiss-Prot  Length:259

    Alignment length:260
                                                                                                                                                                                                                                                                                            259 
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250        |-
           FLSO_NPVAC     1 MIPLTPLFSRYKDSYLLYSFRLIDLLRASKSTHLTKLLSSQATYLYHFACLMKYKDIQKYEVQQLIEWAINASPDMDLQQFRIEFMDKTTELNLRSCQPKSFTYTFTTIWDTMHFLSLIIDDMVYTRDKSSLDFVMQQLKTMKVLFYNVFFILQCAMCRDHYMNVKGFIIYHIELIEIALDKEKYGTDITFVDSYQQETAGADVAVVSNNMLMKNLMAYVSMTFHNHINDYKWIQRNKKPPAHYERMTWGEYKKLLNLQ-   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhh.....--hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhh......hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..----hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee...--------------.eee.hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qzy A   1 GIPLTPLFSRYKDSYLLYSFRLIDLLRAS--THLTKLLSSQATYLYHFACLMKYKDIQKYEVQQLIEWAINASPDMDLQQFRIEFMDKTTELNLRSCQPKSFTYTFTTIWDTMHFLSLIIDDMVYTRDKSSLDFVMQQLKTMKVLFYNVF----CAMCRDHYMNVKGFIIYHIELIEIALDKEKYGTDITFVDSY--------------NMLMKNLMAYVSMTFHNHINDYKWIQRNKKPPAHYERMTWGEYKKLLNLQL 260
                                    10        20        |- |      40        50        60        70        80        90       100       110       120       130       140       150    |  160       170       180       190    |    -       210       220       230       240       250       260
                                                       29 32                                                                                                                   150  155                                     195            210                                                  


Chain B from PDB  Type:PROTEIN  Length:247
 aligned with FLSO_NPVAC | P41480 from UniProtKB/Swiss-Prot  Length:259

    Alignment length:260
                                                                                                                                                                                                                                                                                            259 
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250        |-
           FLSO_NPVAC     1 MIPLTPLFSRYKDSYLLYSFRLIDLLRASKSTHLTKLLSSQATYLYHFACLMKYKDIQKYEVQQLIEWAINASPDMDLQQFRIEFMDKTTELNLRSCQPKSFTYTFTTIWDTMHFLSLIIDDMVYTRDKSSLDFVMQQLKTMKVLFYNVFFILQCAMCRDHYMNVKGFIIYHIELIEIALDKEKYGTDITFVDSYQQETAGADVAVVSNNMLMKNLMAYVSMTFHNHINDYKWIQRNKKPPAHYERMTWGEYKKLLNLQ-   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh.hhhhh......hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee...-------------..eee.hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qzy B   1 GIPLTPLFSRYKDSYLLYSFRLIDLLRASKSTHLTKLLSSQATYLYHFACLMKYKDIQKYEVQQLIEWAINASPDMDLQQFRIEFMDKTTELNLRSCQPKSFTYTFTTIWDTMHFLSLIIDDMVYTRDKSSLDFVMQQLKTMKVLFYNVFFILQCAMCRDHYMNVKGFIIYHIELIEIALDKEKYGTDITFVDSY-------------NNMLMKNLMAYVSMTFHNHINDYKWIQRNKKPPAHYERMTWGEYKKLLNLQL 260
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160|      171       181       191    |    -       210       220       230       240       250       260
                                                                                                                                                                                         160|                               196           209                                                   
                                                                                                                                                                                          162
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3QZY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3QZY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3QZY)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3QZY)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FLSO_NPVAC | P41480: 3p0k

(-) Related Entries Specified in the PDB File

3gwl SULFHYDRYL OXIDASE FROM AFRICAN SWINE FEVER VIRUS
3gwn SULFHYDRYL OXIDASE FROM MIMIVIRUS
3p0k THE SAME PROTEIN CRYSTALLIZED IN C2 SPACE GROUP.