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(-) Description

Title :  CRYSTAL STRUCTURE OF A NIGD-LIKE IMMUNITY PROTEIN (BACCAC_03262) FROM BACTEROIDES CACCAE ATCC 43185 AT 2.42 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  28 Feb 11  (Deposition) - 23 Mar 11  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.42
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Biol. Unit 9:  I  (1x)
Biol. Unit 10:  J  (1x)
Biol. Unit 11:  K  (1x)
Biol. Unit 12:  L  (1x)
Biol. Unit 13:  A,D  (1x)
Biol. Unit 14:  B,C  (1x)
Biol. Unit 15:  E,H  (1x)
Biol. Unit 16:  F,G  (1x)
Biol. Unit 17:  I,L  (1x)
Biol. Unit 18:  J,K  (1x)
Keywords :  Sh3-Like Barrel Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Antitoxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Hypothetical Nigd-Like Protein (Baccac_03262) From Bacteroides Caccae At 2. 42 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL NIGD-LIKE PROTEIN
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Vector Type: PLASMID
    Gene: BACCAC_03262
    Organism Common: TBD
    Organism Scientific: BACTEROIDES CACCAE
    Organism Taxid: 411901

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): A           
Biological Unit 2 (1x):  B          
Biological Unit 3 (1x):   C         
Biological Unit 4 (1x):    D        
Biological Unit 5 (1x):     E       
Biological Unit 6 (1x):      F      
Biological Unit 7 (1x):       G     
Biological Unit 8 (1x):        H    
Biological Unit 9 (1x):         I   
Biological Unit 10 (1x):          J  
Biological Unit 11 (1x):           K 
Biological Unit 12 (1x):            L
Biological Unit 13 (1x): A  D        
Biological Unit 14 (1x):  BC         
Biological Unit 15 (1x):     E  H    
Biological Unit 16 (1x):      FG     
Biological Unit 17 (1x):         I  L
Biological Unit 18 (1x):          JK 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 80)

Asymmetric Unit (3, 80)
No.NameCountTypeFull Name
1CL41Ligand/IonCHLORIDE ION
2EDO3Ligand/Ion1,2-ETHANEDIOL
3MSE36Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (2, 4)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 5 (1, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 6 (1, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 7 (1, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 8 (1, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 9 (2, 4)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 10 (1, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 11 (1, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 12 (2, 4)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 13 (2, 7)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 14 (1, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 15 (1, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 16 (1, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 17 (2, 8)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO2Ligand/Ion1,2-ETHANEDIOL
3MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 18 (1, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (43, 43)

Asymmetric Unit (43, 43)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:223 , SER D:84BINDING SITE FOR RESIDUE CL A 238
02AC2SOFTWARETYR A:184BINDING SITE FOR RESIDUE CL A 250
03AC3SOFTWAREARG A:75 , HOH A:1205BINDING SITE FOR RESIDUE CL A 262
04AC4SOFTWARETYR B:223 , SER C:84BINDING SITE FOR RESIDUE CL B 239
05AC5SOFTWARESER B:84 , TYR C:223BINDING SITE FOR RESIDUE CL B 240
06AC6SOFTWAREALA B:183 , TYR B:184BINDING SITE FOR RESIDUE CL B 251
07AC7SOFTWAREARG B:75BINDING SITE FOR RESIDUE CL B 263
08AC8SOFTWARETYR C:184BINDING SITE FOR RESIDUE CL C 259
09AC9SOFTWAREARG C:74 , ARG C:75BINDING SITE FOR RESIDUE CL C 264
10BC1SOFTWAREGLY D:131BINDING SITE FOR RESIDUE CL D 249
11BC2SOFTWARETYR D:184BINDING SITE FOR RESIDUE CL D 252
12BC3SOFTWAREARG D:75BINDING SITE FOR RESIDUE CL D 261
13BC4SOFTWAREGLU D:34 , PHE D:35BINDING SITE FOR RESIDUE CL D 271
14BC5SOFTWAREHOH C:331 , ALA D:89BINDING SITE FOR RESIDUE CL D 272
15BC6SOFTWAREARG D:74BINDING SITE FOR RESIDUE CL D 276
16BC7SOFTWARETHR D:111 , TYR D:112 , TYR D:169BINDING SITE FOR RESIDUE EDO D 278
17BC8SOFTWARETYR E:223 , SER H:84BINDING SITE FOR RESIDUE CL E 242
18BC9SOFTWARESER E:84 , TYR H:223BINDING SITE FOR RESIDUE CL E 245
19CC1SOFTWARETYR E:184BINDING SITE FOR RESIDUE CL E 253
20CC2SOFTWAREARG E:75BINDING SITE FOR RESIDUE CL E 265
21CC3SOFTWAREARG E:74 , ASN F:142BINDING SITE FOR RESIDUE CL E 275
22CC4SOFTWARETYR F:184BINDING SITE FOR RESIDUE CL F 254
23CC5SOFTWAREARG F:75BINDING SITE FOR RESIDUE CL F 266
24CC6SOFTWAREHOH F:1300 , SER G:84BINDING SITE FOR RESIDUE CL G 243
25CC7SOFTWARESER F:84 , TYR G:223BINDING SITE FOR RESIDUE CL G 244
26CC8SOFTWAREALA G:183 , TYR G:184BINDING SITE FOR RESIDUE CL G 260
27CC9SOFTWAREARG G:75BINDING SITE FOR RESIDUE CL G 267
28DC1SOFTWAREPHE G:35BINDING SITE FOR RESIDUE CL G 274
29DC2SOFTWARETYR H:184BINDING SITE FOR RESIDUE CL H 255
30DC3SOFTWAREARG H:75BINDING SITE FOR RESIDUE CL H 268
31DC4SOFTWARESER I:84 , TYR L:223BINDING SITE FOR RESIDUE CL I 237
32DC5SOFTWARETYR I:184 , HOH I:1352BINDING SITE FOR RESIDUE CL I 256
33DC6SOFTWAREARG I:75BINDING SITE FOR RESIDUE CL I 269
34DC7SOFTWAREPRO I:120 , ASP I:122 , ASN I:138 , LYS I:140 , TYR I:211BINDING SITE FOR RESIDUE EDO I 277
35DC8SOFTWARESER J:84 , TYR K:223BINDING SITE FOR RESIDUE CL J 236
36DC9SOFTWARETYR J:223 , SER K:84BINDING SITE FOR RESIDUE CL J 247
37EC1SOFTWAREALA J:183 , TYR J:184BINDING SITE FOR RESIDUE CL J 248
38EC2SOFTWARETYR K:184BINDING SITE FOR RESIDUE CL K 257
39EC3SOFTWAREARG K:75BINDING SITE FOR RESIDUE CL K 270
40EC4SOFTWAREGLU K:34 , PHE K:35 , HOH K:729BINDING SITE FOR RESIDUE CL K 273
41EC5SOFTWARESER L:84BINDING SITE FOR RESIDUE CL L 246
42EC6SOFTWARETYR L:184BINDING SITE FOR RESIDUE CL L 258
43EC7SOFTWAREASP L:122 , ASN L:138BINDING SITE FOR RESIDUE EDO L 279

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3QWN)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Asn A:225 -Pro A:226
2Asn B:225 -Pro B:226
3Asn C:225 -Pro C:226
4Asn D:225 -Pro D:226
5Asn E:225 -Pro E:226
6Asn F:225 -Pro F:226
7Asn G:225 -Pro G:226
8Asn H:225 -Pro H:226
9Asn I:225 -Pro I:226
10Asn J:225 -Pro J:226
11Asn K:225 -Pro K:226
12Asn L:225 -Pro L:226

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3QWN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3QWN)

(-) Exons   (0, 0)

(no "Exon" information available for 3QWN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:206
 aligned with A5ZK25_9BACE | A5ZK25 from UniProtKB/TrEMBL  Length:235

    Alignment length:206
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227      
         A5ZK25_9BACE    28 YPSVKLEFVTVKAGTDGSIQTLIPDNGEALTVSKDRTGSAISPNTSRRVMSNYETLSNGHTATAVIYSLQSLVTPTPKPADDPTYRDGLKHDPVDVVSIWLGRGYLNMILNLKVNGGKQHVFGIVEDLSEFETNGTVNMLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKITIKFKYYTYDKDGTAIESGKYCNPGFEYVPD 233
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeee.....eeeeee.....eeeeee..........eeeeeeeeeeee....eeeeeeeeee......ee..hhhhh........eeeeeeee..eeeeeeeeee......eeeeeee..hhhhhheeeeeeeee.......eeeeeeeeee.hhhh........eeeeeeeeee.....eeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qwn A  28 YPSVKLEFVTVKAGTDGSIQTLIPDNGEALTVSKDRTGSAISPNTSRRVmSNYETLSNGHTATAVIYSLQSLVTPTPKPADDPTYRDGLKHDPVDVVSIWLGRGYLNmILNLKVNGGKQHVFGIVEDLSEFETNGTVNmLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKITIKFKYYTYDKDGTAIESGKYCNPGFEYVPD 233
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227      
                                                                            77-MSE                                                   135-MSE                        166-MSE                                                               


Chain B from PDB  Type:PROTEIN  Length:207
 aligned with A5ZK25_9BACE | A5ZK25 from UniProtKB/TrEMBL  Length:235

    Alignment length:207
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       
         A5ZK25_9BACE    27 YYPSVKLEFVTVKAGTDGSIQTLIPDNGEALTVSKDRTGSAISPNTSRRVMSNYETLSNGHTATAVIYSLQSLVTPTPKPADDPTYRDGLKHDPVDVVSIWLGRGYLNMILNLKVNGGKQHVFGIVEDLSEFETNGTVNMLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKITIKFKYYTYDKDGTAIESGKYCNPGFEYVPD 233
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeee.....eeeeee.....eeeeee..........eeeeeeeeeeee....eeeeeeeeee......ee..hhhhh........eeeeeeee..eeeeeeeeee......eeeeeee..hhhhhheeeeeeeee.......eeeeeeeeee.hhhh........eeeeeeeeee.....eeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qwn B  27 YYPSVKLEFVTVKAGTDGSIQTLIPDNGEALTVSKDRTGSAISPNTSRRVmSNYETLSNGHTATAVIYSLQSLVTPTPKPADDPTYRDGLKHDPVDVVSIWLGRGYLNmILNLKVNGGKQHVFGIVEDLSEFETNGTVNmLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKITIKFKYYTYDKDGTAIESGKYCNPGFEYVPD 233
                                    36        46        56        66        76|       86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       
                                                                             77-MSE                                                   135-MSE                        166-MSE                                                               


Chain C from PDB  Type:PROTEIN  Length:203
 aligned with A5ZK25_9BACE | A5ZK25 from UniProtKB/TrEMBL  Length:235

    Alignment length:203
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230   
         A5ZK25_9BACE    31 VKLEFVTVKAGTDGSIQTLIPDNGEALTVSKDRTGSAISPNTSRRVMSNYETLSNGHTATAVIYSLQSLVTPTPKPADDPTYRDGLKHDPVDVVSIWLGRGYLNMILNLKVNGGKQHVFGIVEDLSEFETNGTVNMLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKITIKFKYYTYDKDGTAIESGKYCNPGFEYVPD 233
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.....eeeeee.....eeeeee..........eeeeeeeeeeee....eeeeeeeeee......ee..hhhhh........eeeeeeee..eeeeeeeeee......eeeeeee..hhhhhheeeeeeeee.......eeeeeeeeee.hhhh........eeeeeeeeee.....eeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qwn C  31 VKLEFVTVKAGTDGSIQTLIPDNGEALTVSKDRTGSAISPNTSRRVmSNYETLSNGHTATAVIYSLQSLVTPTPKPADDPTYRDGLKHDPVDVVSIWLGRGYLNmILNLKVNGGKQHVFGIVEDLSEFETNGTVNmLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKITIKFKYYTYDKDGTAIESGKYCNPGFEYVPD 233
                                    40        50        60        70      | 80        90       100       110       120       130    |  140       150       160     | 170       180       190       200       210       220       230   
                                                                         77-MSE                                                   135-MSE                        166-MSE                                                               


Chain D from PDB  Type:PROTEIN  Length:204
 aligned with A5ZK25_9BACE | A5ZK25 from UniProtKB/TrEMBL  Length:235

    Alignment length:204
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229    
         A5ZK25_9BACE    30 SVKLEFVTVKAGTDGSIQTLIPDNGEALTVSKDRTGSAISPNTSRRVMSNYETLSNGHTATAVIYSLQSLVTPTPKPADDPTYRDGLKHDPVDVVSIWLGRGYLNMILNLKVNGGKQHVFGIVEDLSEFETNGTVNMLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKITIKFKYYTYDKDGTAIESGKYCNPGFEYVPD 233
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeee.....eeeeee.....eeeeee..........eeeeeeeeeeee....eeeeeeeeee......ee..hhhhh........eeeeeeee..eeeeeeeeee......eeeeeee..hhhhhheeeeeeeee.......eeeeeeeeee.hhhh........eeeeeeeeee.....eeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3qwn D  30 SVKLEFVTVKAGTDGSIQTLIPDNGEALTVSKDRTGSAISPNTSRRVmSNYETLSNGHTATAVIYSLQSLVTPTPKPADDPTYRDGLKHDPVDVVSIWLGRGYLNmILNLKVNGGKQHVFGIVEDLSEFETNGTVNmLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKITIKFKYYTYDKDGTAIESGKYCNPGFEYVPD 233
                                    39        49        59        69       |79        89        99       109       119       129     | 139       149       159      |169       179       189       199       209       219       229    
                                                                          77-MSE                                                   135-MSE                        166-MSE                                                               


Chain E from PDB  Type:PROTEIN  Length:205
 aligned with A5ZK25_9BACE | A5ZK25 from UniProtKB/TrEMBL  Length:235

    Alignment length:205
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228     
         A5ZK25_9BACE    29 PSVKLEFVTVKAGTDGSIQTLIPDNGEALTVSKDRTGSAISPNTSRRVMSNYETLSNGHTATAVIYSLQSLVTPTPKPADDPTYRDGLKHDPVDVVSIWLGRGYLNMILNLKVNGGKQHVFGIVEDLSEFETNGTVNMLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKITIKFKYYTYDKDGTAIESGKYCNPGFEYVPD 233
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee.....eeeeee.....eeeeee..........eeeeeeeeeeee....eeeeeeeeee......ee..hhhhh........eeeeeeee..eeeeeeeeee......eeeeeee..hhhhhheeeeeeeee.......eeeeeeeeee.hhhh........eeeeeeeeee.....eeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qwn E  29 PSVKLEFVTVKAGTDGSIQTLIPDNGEALTVSKDRTGSAISPNTSRRVmSNYETLSNGHTATAVIYSLQSLVTPTPKPADDPTYRDGLKHDPVDVVSIWLGRGYLNmILNLKVNGGKQHVFGIVEDLSEFETNGTVNmLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKITIKFKYYTYDKDGTAIESGKYCNPGFEYVPD 233
                                    38        48        58        68        78        88        98       108       118       128      |138       148       158       168       178       188       198       208       218       228     
                                                                           77-MSE                                                   135-MSE                        166-MSE                                                               


Chain F from PDB  Type:PROTEIN  Length:205
 aligned with A5ZK25_9BACE | A5ZK25 from UniProtKB/TrEMBL  Length:235

    Alignment length:205
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228     
         A5ZK25_9BACE    29 PSVKLEFVTVKAGTDGSIQTLIPDNGEALTVSKDRTGSAISPNTSRRVMSNYETLSNGHTATAVIYSLQSLVTPTPKPADDPTYRDGLKHDPVDVVSIWLGRGYLNMILNLKVNGGKQHVFGIVEDLSEFETNGTVNMLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKITIKFKYYTYDKDGTAIESGKYCNPGFEYVPD 233
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee.....eeeeee.....eeeeee..........eeeeeeeeeeee....eeeeeeeeee......ee..hhhhh........eeeeeeee..eeeeeeeeee......eeeeeee..hhhhhheeeeeeeee.......eeeeeeeeee.hhhh........eeeeeeeeee.....eeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qwn F  29 PSVKLEFVTVKAGTDGSIQTLIPDNGEALTVSKDRTGSAISPNTSRRVmSNYETLSNGHTATAVIYSLQSLVTPTPKPADDPTYRDGLKHDPVDVVSIWLGRGYLNmILNLKVNGGKQHVFGIVEDLSEFETNGTVNmLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKITIKFKYYTYDKDGTAIESGKYCNPGFEYVPD 233
                                    38        48        58        68        78        88        98       108       118       128      |138       148       158       168       178       188       198       208       218       228     
                                                                           77-MSE                                                   135-MSE                        166-MSE                                                               


Chain G from PDB  Type:PROTEIN  Length:207
 aligned with A5ZK25_9BACE | A5ZK25 from UniProtKB/TrEMBL  Length:235

    Alignment length:209
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224         
         A5ZK25_9BACE    25 DYYYPSVKLEFVTVKAGTDGSIQTLIPDNGEALTVSKDRTGSAISPNTSRRVMSNYETLSNGHTATAVIYSLQSLVTPTPKPADDPTYRDGLKHDPVDVVSIWLGRGYLNMILNLKVNGGKQHVFGIVEDLSEFETNGTVNMLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKITIKFKYYTYDKDGTAIESGKYCNPGFEYVPD 233
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...--....eeeeeee.....eeeeee.....eeeeee..........eeeeeeeeeeee....eeeeeeeeee......ee..hhhhh........eeeeeeee..eeeeeeeeee......eeeeeee..hhhhhheeeeeeeee.......eeeeeeeeee.hhhh........eeeeeeeeee.....eeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qwn G  25 DYY--SVKLEFVTVKAGTDGSIQTLIPDNGEALTVSKDRTGSAISPNTSRRVmSNYETLSNGHTATAVIYSLQSLVTPTPKPADDPTYRDGLKHDPVDVVSIWLGRGYLNmILNLKVNGGKQHVFGIVEDLSEFETNGTVNmLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKITIKFKYYTYDKDGTAIESGKYCNPGFEYVPD 233
                              |  |  34        44        54        64        74  |     84        94       104       114       124       134|      144       154       164 |     174       184       194       204       214       224         
                             27 30                                             77-MSE                                                   135-MSE                        166-MSE                                                               


Chain H from PDB  Type:PROTEIN  Length:206
 aligned with A5ZK25_9BACE | A5ZK25 from UniProtKB/TrEMBL  Length:235

    Alignment length:206
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227      
         A5ZK25_9BACE    28 YPSVKLEFVTVKAGTDGSIQTLIPDNGEALTVSKDRTGSAISPNTSRRVMSNYETLSNGHTATAVIYSLQSLVTPTPKPADDPTYRDGLKHDPVDVVSIWLGRGYLNMILNLKVNGGKQHVFGIVEDLSEFETNGTVNMLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKITIKFKYYTYDKDGTAIESGKYCNPGFEYVPD 233
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeee.....eeeeee.....eeeeee..........eeeeeeeeeeee....eeeeeeeeee......ee..hhhhh........eeeeeee...eeeeeeeeee......eeeeeee..hhhhhheeeeeeeee.......eeeeeeeeee.hhhh........eeeeeeeeee.....eeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qwn H  28 YPSVKLEFVTVKAGTDGSIQTLIPDNGEALTVSKDRTGSAISPNTSRRVmSNYETLSNGHTATAVIYSLQSLVTPTPKPADDPTYRDGLKHDPVDVVSIWLGRGYLNmILNLKVNGGKQHVFGIVEDLSEFETNGTVNmLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKITIKFKYYTYDKDGTAIESGKYCNPGFEYVPD 233
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227      
                                                                            77-MSE                                                   135-MSE                        166-MSE                                                               


Chain I from PDB  Type:PROTEIN  Length:205
 aligned with A5ZK25_9BACE | A5ZK25 from UniProtKB/TrEMBL  Length:235

    Alignment length:205
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228     
         A5ZK25_9BACE    29 PSVKLEFVTVKAGTDGSIQTLIPDNGEALTVSKDRTGSAISPNTSRRVMSNYETLSNGHTATAVIYSLQSLVTPTPKPADDPTYRDGLKHDPVDVVSIWLGRGYLNMILNLKVNGGKQHVFGIVEDLSEFETNGTVNMLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKITIKFKYYTYDKDGTAIESGKYCNPGFEYVPD 233
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee.....eeeeee.....eeeeee..........eeeeeeeeeeee....eeeeeeeeee......ee..hhhhh........eeeeeeee..eeeeeeeeee......eeeeeee..hhhhhheeeeeeeee.......eeeeeeeeee.hhhh........eeeeeeeeee.....eeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qwn I  29 PSVKLEFVTVKAGTDGSIQTLIPDNGEALTVSKDRTGSAISPNTSRRVmSNYETLSNGHTATAVIYSLQSLVTPTPKPADDPTYRDGLKHDPVDVVSIWLGRGYLNmILNLKVNGGKQHVFGIVEDLSEFETNGTVNmLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKITIKFKYYTYDKDGTAIESGKYCNPGFEYVPD 233
                                    38        48        58        68        78        88        98       108       118       128      |138       148       158       168       178       188       198       208       218       228     
                                                                           77-MSE                                                   135-MSE                        166-MSE                                                               


Chain J from PDB  Type:PROTEIN  Length:208
 aligned with A5ZK25_9BACE | A5ZK25 from UniProtKB/TrEMBL  Length:235

    Alignment length:208
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225        
         A5ZK25_9BACE    26 YYYPSVKLEFVTVKAGTDGSIQTLIPDNGEALTVSKDRTGSAISPNTSRRVMSNYETLSNGHTATAVIYSLQSLVTPTPKPADDPTYRDGLKHDPVDVVSIWLGRGYLNMILNLKVNGGKQHVFGIVEDLSEFETNGTVNMLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKITIKFKYYTYDKDGTAIESGKYCNPGFEYVPD 233
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeee.....eeeeee.....eeeeee..........eeeeeeeeeeee....eeeeeeeeee......ee..hhhhh........eeeeeeee..eeeeeeeeee......eeeeeee..hhhhhheeeeeeeee.......eeeeeeeeee.hhhh........eeeeeeeeee.....eeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qwn J  26 YYYPSVKLEFVTVKAGTDGSIQTLIPDNGEALTVSKDRTGSAISPNTSRRVmSNYETLSNGHTATAVIYSLQSLVTPTPKPADDPTYRDGLKHDPVDVVSIWLGRGYLNmILNLKVNGGKQHVFGIVEDLSEFETNGTVNmLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKITIKFKYYTYDKDGTAIESGKYCNPGFEYVPD 233
                                    35        45        55        65        75 |      85        95       105       115       125       135       145       155       165|      175       185       195       205       215       225        
                                                                              77-MSE                                                   135-MSE                        166-MSE                                                               


Chain K from PDB  Type:PROTEIN  Length:204
 aligned with A5ZK25_9BACE | A5ZK25 from UniProtKB/TrEMBL  Length:235

    Alignment length:206
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227      
         A5ZK25_9BACE    28 YPSVKLEFVTVKAGTDGSIQTLIPDNGEALTVSKDRTGSAISPNTSRRVMSNYETLSNGHTATAVIYSLQSLVTPTPKPADDPTYRDGLKHDPVDVVSIWLGRGYLNMILNLKVNGGKQHVFGIVEDLSEFETNGTVNMLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKITIKFKYYTYDKDGTAIESGKYCNPGFEYVPD 233
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .--...eeeeeee.....eeeeee.....eeeeee..........eeeeeeeeeeee....eeeeeeeeee......ee..hhhhh........eeeeeeee..eeeeeeeeee......eeeeeee..hhhhhheeeeeeeee.......eeeeeeeeee.hhhh........eeeeeeeeee.....eeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qwn K  28 Y--VKLEFVTVKAGTDGSIQTLIPDNGEALTVSKDRTGSAISPNTSRRVmSNYETLSNGHTATAVIYSLQSLVTPTPKPADDPTYRDGLKHDPVDVVSIWLGRGYLNmILNLKVNGGKQHVFGIVEDLSEFETNGTVNmLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKITIKFKYYTYDKDGTAIESGKYCNPGFEYVPD 233
                            |  |    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227      
                           28 31                                            77-MSE                                                   135-MSE                        166-MSE                                                               


Chain L from PDB  Type:PROTEIN  Length:203
 aligned with A5ZK25_9BACE | A5ZK25 from UniProtKB/TrEMBL  Length:235

    Alignment length:203
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230   
         A5ZK25_9BACE    31 VKLEFVTVKAGTDGSIQTLIPDNGEALTVSKDRTGSAISPNTSRRVMSNYETLSNGHTATAVIYSLQSLVTPTPKPADDPTYRDGLKHDPVDVVSIWLGRGYLNMILNLKVNGGKQHVFGIVEDLSEFETNGTVNMLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKITIKFKYYTYDKDGTAIESGKYCNPGFEYVPD 233
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----NigD-3qwnL01 L:35-219                                                                                                                                                                    -------------- Pfam domains (1)
           Pfam domains (2) ----NigD-3qwnL02 L:35-219                                                                                                                                                                    -------------- Pfam domains (2)
           Pfam domains (3) ----NigD-3qwnL03 L:35-219                                                                                                                                                                    -------------- Pfam domains (3)
           Pfam domains (4) ----NigD-3qwnL04 L:35-219                                                                                                                                                                    -------------- Pfam domains (4)
           Pfam domains (5) ----NigD-3qwnL05 L:35-219                                                                                                                                                                    -------------- Pfam domains (5)
           Pfam domains (6) ----NigD-3qwnL06 L:35-219                                                                                                                                                                    -------------- Pfam domains (6)
           Pfam domains (7) ----NigD-3qwnL07 L:35-219                                                                                                                                                                    -------------- Pfam domains (7)
           Pfam domains (8) ----NigD-3qwnL08 L:35-219                                                                                                                                                                    -------------- Pfam domains (8)
           Pfam domains (9) ----NigD-3qwnL09 L:35-219                                                                                                                                                                    -------------- Pfam domains (9)
          Pfam domains (10) ----NigD-3qwnL10 L:35-219                                                                                                                                                                    -------------- Pfam domains (10)
          Pfam domains (11) ----NigD-3qwnL11 L:35-219                                                                                                                                                                    -------------- Pfam domains (11)
          Pfam domains (12) ----NigD-3qwnL12 L:35-219                                                                                                                                                                    -------------- Pfam domains (12)
         Sec.struct. author ...eeeeeee.....eeeeee.....eeeeee..........eeeeeeeeeeee....eeeeeeeeee......ee..hhhhh........eeeeeeee..eeeeeeeeee......eeeeeee..hhhhhheeeeeeeee.......eeeeeeeeee.hhhh........eeeeeeeeee.....eeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qwn L  31 VKLEFVTVKAGTDGSIQTLIPDNGEALTVSKDRTGSAISPNTSRRVmSNYETLSNGHTATAVIYSLQSLVTPTPKPADDPTYRDGLKHDPVDVVSIWLGRGYLNmILNLKVNGGKQHVFGIVEDLSEFETNGTVNmLLYHDANGDEEYYNRRAYLSVPLDKYADAENPGQKITIKFKYYTYDKDGTAIESGKYCNPGFEYVPD 233
                                    40        50        60        70      | 80        90       100       110       120       130    |  140       150       160     | 170       180       190       200       210       220       230   
                                                                         77-MSE                                                   135-MSE                        166-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3QWN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3QWN)

(-) Pfam Domains  (1, 12)

Asymmetric Unit
(-)
Clan: no clan defined [family: NigD] (4)
(-)
Family: NigD (4)
(-)
Bacteroides caccae ATCC 43185 (1)
1aNigD-3qwnL01L:35-219
1bNigD-3qwnL02L:35-219
1cNigD-3qwnL03L:35-219
1dNigD-3qwnL04L:35-219
1eNigD-3qwnL05L:35-219
1fNigD-3qwnL06L:35-219
1gNigD-3qwnL07L:35-219
1hNigD-3qwnL08L:35-219
1iNigD-3qwnL09L:35-219
1jNigD-3qwnL10L:35-219
1kNigD-3qwnL11L:35-219
1lNigD-3qwnL12L:35-219

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3QWN)

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 Related Entries

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