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Asym. Unit
Info
Asym.Unit (843 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 10 (76 KB)
Biol.Unit 11 (75 KB)
Biol.Unit 12 (75 KB)
Biol.Unit 13 (145 KB)
Biol.Unit 14 (145 KB)
Biol.Unit 15 (144 KB)
Biol.Unit 16 (144 KB)
Biol.Unit 17 (144 KB)
Biol.Unit 18 (145 KB)
Biol.Unit 2 (76 KB)
Biol.Unit 3 (76 KB)
Biol.Unit 4 (75 KB)
Biol.Unit 5 (75 KB)
Biol.Unit 6 (75 KB)
Biol.Unit 7 (76 KB)
Biol.Unit 8 (75 KB)
Biol.Unit 9 (76 KB)
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Title
:
CRYSTAL STRUCTURE OF A NIGD-LIKE IMMUNITY PROTEIN (BACCAC_03262) FROM BACTEROIDES CACCAE ATCC 43185 AT 2.42 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
28 Feb 11 (Deposition) - 23 Mar 11 (Release) - 24 Dec 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.42
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: I (1x)
Biol. Unit 10: J (1x)
Biol. Unit 11: K (1x)
Biol. Unit 12: L (1x)
Biol. Unit 13: A,D (1x)
Biol. Unit 14: B,C (1x)
Biol. Unit 15: E,H (1x)
Biol. Unit 16: F,G (1x)
Biol. Unit 17: I,L (1x)
Biol. Unit 18: J,K (1x)
Keywords
:
Sh3-Like Barrel Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Antitoxin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Hypothetical Nigd-Like Protein (Baccac_03262) From Bacteroides Caccae At 2. 42 A Resolution
To Be Published
[
close entry info
]
Hetero Components
(3, 80)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1aa: CHLORIDE ION (CLaa)
1ab: CHLORIDE ION (CLab)
1ac: CHLORIDE ION (CLac)
1ad: CHLORIDE ION (CLad)
1ae: CHLORIDE ION (CLae)
1af: CHLORIDE ION (CLaf)
1ag: CHLORIDE ION (CLag)
1ah: CHLORIDE ION (CLah)
1ai: CHLORIDE ION (CLai)
1aj: CHLORIDE ION (CLaj)
1ak: CHLORIDE ION (CLak)
1al: CHLORIDE ION (CLal)
1am: CHLORIDE ION (CLam)
1an: CHLORIDE ION (CLan)
1ao: CHLORIDE ION (CLao)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
1p: CHLORIDE ION (CLp)
1q: CHLORIDE ION (CLq)
1r: CHLORIDE ION (CLr)
1s: CHLORIDE ION (CLs)
1t: CHLORIDE ION (CLt)
1u: CHLORIDE ION (CLu)
1v: CHLORIDE ION (CLv)
1w: CHLORIDE ION (CLw)
1x: CHLORIDE ION (CLx)
1y: CHLORIDE ION (CLy)
1z: CHLORIDE ION (CLz)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3ag: SELENOMETHIONINE (MSEag)
3ah: SELENOMETHIONINE (MSEah)
3ai: SELENOMETHIONINE (MSEai)
3aj: SELENOMETHIONINE (MSEaj)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
41
Ligand/Ion
CHLORIDE ION
2
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
3
MSE
36
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(43, 43)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:223 , SER D:84
BINDING SITE FOR RESIDUE CL A 238
02
AC2
SOFTWARE
TYR A:184
BINDING SITE FOR RESIDUE CL A 250
03
AC3
SOFTWARE
ARG A:75 , HOH A:1205
BINDING SITE FOR RESIDUE CL A 262
04
AC4
SOFTWARE
TYR B:223 , SER C:84
BINDING SITE FOR RESIDUE CL B 239
05
AC5
SOFTWARE
SER B:84 , TYR C:223
BINDING SITE FOR RESIDUE CL B 240
06
AC6
SOFTWARE
ALA B:183 , TYR B:184
BINDING SITE FOR RESIDUE CL B 251
07
AC7
SOFTWARE
ARG B:75
BINDING SITE FOR RESIDUE CL B 263
08
AC8
SOFTWARE
TYR C:184
BINDING SITE FOR RESIDUE CL C 259
09
AC9
SOFTWARE
ARG C:74 , ARG C:75
BINDING SITE FOR RESIDUE CL C 264
10
BC1
SOFTWARE
GLY D:131
BINDING SITE FOR RESIDUE CL D 249
11
BC2
SOFTWARE
TYR D:184
BINDING SITE FOR RESIDUE CL D 252
12
BC3
SOFTWARE
ARG D:75
BINDING SITE FOR RESIDUE CL D 261
13
BC4
SOFTWARE
GLU D:34 , PHE D:35
BINDING SITE FOR RESIDUE CL D 271
14
BC5
SOFTWARE
HOH C:331 , ALA D:89
BINDING SITE FOR RESIDUE CL D 272
15
BC6
SOFTWARE
ARG D:74
BINDING SITE FOR RESIDUE CL D 276
16
BC7
SOFTWARE
THR D:111 , TYR D:112 , TYR D:169
BINDING SITE FOR RESIDUE EDO D 278
17
BC8
SOFTWARE
TYR E:223 , SER H:84
BINDING SITE FOR RESIDUE CL E 242
18
BC9
SOFTWARE
SER E:84 , TYR H:223
BINDING SITE FOR RESIDUE CL E 245
19
CC1
SOFTWARE
TYR E:184
BINDING SITE FOR RESIDUE CL E 253
20
CC2
SOFTWARE
ARG E:75
BINDING SITE FOR RESIDUE CL E 265
21
CC3
SOFTWARE
ARG E:74 , ASN F:142
BINDING SITE FOR RESIDUE CL E 275
22
CC4
SOFTWARE
TYR F:184
BINDING SITE FOR RESIDUE CL F 254
23
CC5
SOFTWARE
ARG F:75
BINDING SITE FOR RESIDUE CL F 266
24
CC6
SOFTWARE
HOH F:1300 , SER G:84
BINDING SITE FOR RESIDUE CL G 243
25
CC7
SOFTWARE
SER F:84 , TYR G:223
BINDING SITE FOR RESIDUE CL G 244
26
CC8
SOFTWARE
ALA G:183 , TYR G:184
BINDING SITE FOR RESIDUE CL G 260
27
CC9
SOFTWARE
ARG G:75
BINDING SITE FOR RESIDUE CL G 267
28
DC1
SOFTWARE
PHE G:35
BINDING SITE FOR RESIDUE CL G 274
29
DC2
SOFTWARE
TYR H:184
BINDING SITE FOR RESIDUE CL H 255
30
DC3
SOFTWARE
ARG H:75
BINDING SITE FOR RESIDUE CL H 268
31
DC4
SOFTWARE
SER I:84 , TYR L:223
BINDING SITE FOR RESIDUE CL I 237
32
DC5
SOFTWARE
TYR I:184 , HOH I:1352
BINDING SITE FOR RESIDUE CL I 256
33
DC6
SOFTWARE
ARG I:75
BINDING SITE FOR RESIDUE CL I 269
34
DC7
SOFTWARE
PRO I:120 , ASP I:122 , ASN I:138 , LYS I:140 , TYR I:211
BINDING SITE FOR RESIDUE EDO I 277
35
DC8
SOFTWARE
SER J:84 , TYR K:223
BINDING SITE FOR RESIDUE CL J 236
36
DC9
SOFTWARE
TYR J:223 , SER K:84
BINDING SITE FOR RESIDUE CL J 247
37
EC1
SOFTWARE
ALA J:183 , TYR J:184
BINDING SITE FOR RESIDUE CL J 248
38
EC2
SOFTWARE
TYR K:184
BINDING SITE FOR RESIDUE CL K 257
39
EC3
SOFTWARE
ARG K:75
BINDING SITE FOR RESIDUE CL K 270
40
EC4
SOFTWARE
GLU K:34 , PHE K:35 , HOH K:729
BINDING SITE FOR RESIDUE CL K 273
41
EC5
SOFTWARE
SER L:84
BINDING SITE FOR RESIDUE CL L 246
42
EC6
SOFTWARE
TYR L:184
BINDING SITE FOR RESIDUE CL L 258
43
EC7
SOFTWARE
ASP L:122 , ASN L:138
BINDING SITE FOR RESIDUE EDO L 279
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_NigD_3qwnL01 (L:35-219)
1b: PFAM_NigD_3qwnL02 (L:35-219)
1c: PFAM_NigD_3qwnL03 (L:35-219)
1d: PFAM_NigD_3qwnL04 (L:35-219)
1e: PFAM_NigD_3qwnL05 (L:35-219)
1f: PFAM_NigD_3qwnL06 (L:35-219)
1g: PFAM_NigD_3qwnL07 (L:35-219)
1h: PFAM_NigD_3qwnL08 (L:35-219)
1i: PFAM_NigD_3qwnL09 (L:35-219)
1j: PFAM_NigD_3qwnL10 (L:35-219)
1k: PFAM_NigD_3qwnL11 (L:35-219)
1l: PFAM_NigD_3qwnL12 (L:35-219)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: NigD]
(4)
Family
:
NigD
(4)
Bacteroides caccae ATCC 43185
(1)
1a
NigD-3qwnL01
L:35-219
1b
NigD-3qwnL02
L:35-219
1c
NigD-3qwnL03
L:35-219
1d
NigD-3qwnL04
L:35-219
1e
NigD-3qwnL05
L:35-219
1f
NigD-3qwnL06
L:35-219
1g
NigD-3qwnL07
L:35-219
1h
NigD-3qwnL08
L:35-219
1i
NigD-3qwnL09
L:35-219
1j
NigD-3qwnL10
L:35-219
1k
NigD-3qwnL11
L:35-219
1l
NigD-3qwnL12
L:35-219
[
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]
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Asym.Unit (843 KB)
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Biol.Unit 10 (76 KB)
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