Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF A SUSD-LIKE PROTEIN (BF3747) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 2.70 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  08 Feb 11  (Deposition) - 09 Mar 11  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Alpha-Alpha Superhelix, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Hypothetical Susd-Like Protein (Bf3747) From Bacteroides Fragilis Nctc 9343 At 2. 70 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE LIPOPROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: SEQUENCE DATABASE RESIDUES 26-541
    Gene: BF3747
    Organism Scientific: BACTEROIDES FRAGILIS
    Organism Taxid: 272559
    Strain: ATCC 25285 / NCTC 9343
    Synonym: HYPOTHETICAL SUSD-LIKE PROTEIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 58)

Asymmetric Unit (4, 58)
No.NameCountTypeFull Name
1ACT7Ligand/IonACETATE ION
2CL1Ligand/IonCHLORIDE ION
3MSE44Mod. Amino AcidSELENOMETHIONINE
4PO46Ligand/IonPHOSPHATE ION
Biological Unit 1 (3, 27)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3MSE22Mod. Amino AcidSELENOMETHIONINE
4PO43Ligand/IonPHOSPHATE ION
Biological Unit 2 (3, 30)
No.NameCountTypeFull Name
1ACT5Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3MSE22Mod. Amino AcidSELENOMETHIONINE
4PO43Ligand/IonPHOSPHATE ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:293 , TRP B:166BINDING SITE FOR RESIDUE CL B 600
02AC2SOFTWARESER B:56 , ASP B:58 , TYR B:104 , GLU B:145 , ARG B:149 , GLU B:475 , ACT B:607BINDING SITE FOR RESIDUE PO4 B 601
03AC3SOFTWAREARG B:75 , ARG B:79 , TYR B:87 , ASP B:511 , ILE B:512 , ARG C:79 , MSE C:89 , PO4 C:603BINDING SITE FOR RESIDUE PO4 B 602
04AC4SOFTWARESER B:91 , ALA B:92 , SER B:93 , HIS B:526 , ARG C:498 , LYS C:506BINDING SITE FOR RESIDUE PO4 B 604
05AC5SOFTWARESER B:56 , TYR B:104 , GLU B:145 , PO4 B:601BINDING SITE FOR RESIDUE ACT B 607
06AC6SOFTWARELYS B:148 , GLU B:173 , TYR B:218BINDING SITE FOR RESIDUE ACT B 608
07AC7SOFTWAREARG B:79 , MSE B:89 , PO4 B:602 , ARG C:75 , ARG C:79 , TYR C:87 , ASP C:511 , ILE C:512BINDING SITE FOR RESIDUE PO4 C 603
08AC8SOFTWAREARG B:498 , LYS B:509 , MSE C:89 , VAL C:90 , ARG C:518BINDING SITE FOR RESIDUE PO4 C 605
09AC9SOFTWAREARG B:498 , LYS B:506 , SER C:91 , ALA C:92 , SER C:93 , HIS C:526 , HOH C:675BINDING SITE FOR RESIDUE PO4 C 606
10BC1SOFTWARESER C:56 , TYR C:104 , GLU C:145BINDING SITE FOR RESIDUE ACT C 609
11BC2SOFTWARELYS C:148 , GLU C:173BINDING SITE FOR RESIDUE ACT C 610
12BC3SOFTWARESER C:56 , ASP C:58 , TYR C:104 , ARG C:149 , GLU C:475BINDING SITE FOR RESIDUE ACT C 611
13BC4SOFTWAREHOH C:673BINDING SITE FOR RESIDUE ACT C 612
14BC5SOFTWAREASP D:292 , ARG D:293 , GLY D:294 , TRP D:295 , ASP D:377BINDING SITE FOR RESIDUE ACT D 613

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3QNK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3QNK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3QNK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3QNK)

(-) Exons   (0, 0)

(no "Exon" information available for 3QNK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:512
 aligned with Q5L904_BACFN | Q5L904 from UniProtKB/TrEMBL  Length:541

    Alignment length:516
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535      
        Q5L904_BACFN     26 KAPLDEIADDSFWSDETLVKYYVNDLYSEISVDGLQLQENRSDNSVSAQRDKYRASWFKFNYDMVSASDPQDDDVWEDYYVKVRKCNRFFERIGTSTIEESEKSRLTGEVHFLRAMFYFEMVKRYGGVILLDKVLTMEDNWEIPRSSEKECYDFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKLGYELVDGTTPEKYRSIWWTTNKDNKEIIFDVQYKSPDVYNNMMVCNMVTYINDKYGDRGWGGLGPTQELIDAFEMADGTPATQYSQAPADQVFDINTCGIYEGREPRFYANIVFHGSQIFFNADKGAVTVDRYLMDTPDKGDGSLTGYNVWKWIDYDNYNYPYAGAGSPDFSTNWIILRYAEIYLNDAEARLETGDVEGARKAVNMIRQRVGLPDLTESDPEKLRELIRKERRIEFAFEEQRFYDVRRWKIGPETQTTLHGVRFVSPTEFKVTKTDIRTWNDRLYLTPVPHDEIVRSSVLKQNLGY  541
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhh.......hhhhhhhhhhhhhhh........hhhhh..........hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.........hhhhhhhhhhhhhh....eeeeeee.......hhhhhhh..................hhhhhhhh..................eee..........hhhhhhhee....ee........ee...................ee................----..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.eeeeeee....eeeeeeeee...hhhhhh...hhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3qnk A   26 KAPLDEIADDSFWSDETLVKYYVNDLYSEISVDGLQLQENRSDNSVSAQRDKYRASWFKFNYDmVSASDPQDDDVWEDYYVKVRKCNRFFERIGTSTIEESEKSRLTGEVHFLRAmFYFEmVKRYGGVILLDKVLTmEDNWEIPRSSEKECYDFILEDLKKATEmLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKLGYELVDGTTPEKYRSIWWTTNKDNKEIIFDVQYKSPDVYNNmmVCNmVTYINDKYGDRGWGGLGPTQELIDAFEmADGTPATQYSQAPADQVFDINTCGIYEGREPRFYANIVFHGSQIFFNADKGAVTVDRYLmDTPDKGDGSLTGYNVWKWIDYDNYNYPYAGA----FSTNWIILRYAEIYLNDAEARLETGDVEGARKAVNmIRQRVGLPDLTESDPEKLRELIRKERRIEFAFEEQRFYDVRRWKIGPETQTTLHGVRFVSPTEFKVTKTDIRTWNDRLYLTPVPHDEIVRSSVLKQNLGY  541
                                    35        45        55        65        75        85   |    95       105       115       125       135     | 145|      155      |165       175       185    |  195       205       215       225       235       245       255       265       275 ||   |285       295       305    |  315       325       335       345       355       365    |  375       385       395     |   -|      415       425       435     | 445       455       465       475       485       495       505       515       525       535      
                                                                                          89-MSE                                             141-MSE|             162-MSE                     190-MSE                                                                                277-MSE|                         310-MSE                                                     370-MSE                        401  406                                441-MSE                                                                                                
                                                                                                                                                  146-MSE                                                                                                                             278-MSE                                                                                                                                                                                                                                                                   
                                                                                                                                                                                                                                                                                          282-MSE                                                                                                                                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:513
 aligned with Q5L904_BACFN | Q5L904 from UniProtKB/TrEMBL  Length:541

    Alignment length:516
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535      
        Q5L904_BACFN     26 KAPLDEIADDSFWSDETLVKYYVNDLYSEISVDGLQLQENRSDNSVSAQRDKYRASWFKFNYDMVSASDPQDDDVWEDYYVKVRKCNRFFERIGTSTIEESEKSRLTGEVHFLRAMFYFEMVKRYGGVILLDKVLTMEDNWEIPRSSEKECYDFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKLGYELVDGTTPEKYRSIWWTTNKDNKEIIFDVQYKSPDVYNNMMVCNMVTYINDKYGDRGWGGLGPTQELIDAFEMADGTPATQYSQAPADQVFDINTCGIYEGREPRFYANIVFHGSQIFFNADKGAVTVDRYLMDTPDKGDGSLTGYNVWKWIDYDNYNYPYAGAGSPDFSTNWIILRYAEIYLNDAEARLETGDVEGARKAVNMIRQRVGLPDLTESDPEKLRELIRKERRIEFAFEEQRFYDVRRWKIGPETQTTLHGVRFVSPTEFKVTKTDIRTWNDRLYLTPVPHDEIVRSSVLKQNLGY  541
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhh.......hhhhhhhhhhhhhhh........hhhhh..........hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.........hhhhhhhhhhhhhh....eeeeeee.......hhhhhhh..................hhhhhhhh...................ee..........hhhhhhhee....ee........ee...................ee................---...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.eeeeeee....eeeeeeeee...hhhhhh...hhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3qnk B   26 KAPLDEIADDSFWSDETLVKYYVNDLYSEISVDGLQLQENRSDNSVSAQRDKYRASWFKFNYDmVSASDPQDDDVWEDYYVKVRKCNRFFERIGTSTIEESEKSRLTGEVHFLRAmFYFEmVKRYGGVILLDKVLTmEDNWEIPRSSEKECYDFILEDLKKATEmLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKLGYELVDGTTPEKYRSIWWTTNKDNKEIIFDVQYKSPDVYNNmmVCNmVTYINDKYGDRGWGGLGPTQELIDAFEmADGTPATQYSQAPADQVFDINTCGIYEGREPRFYANIVFHGSQIFFNADKGAVTVDRYLmDTPDKGDGSLTGYNVWKWIDYDNYNYPYAGA---DFSTNWIILRYAEIYLNDAEARLETGDVEGARKAVNmIRQRVGLPDLTESDPEKLRELIRKERRIEFAFEEQRFYDVRRWKIGPETQTTLHGVRFVSPTEFKVTKTDIRTWNDRLYLTPVPHDEIVRSSVLKQNLGY  541
                                    35        45        55        65        75        85   |    95       105       115       125       135     | 145|      155      |165 |     175       185    |  195       205       215       225       235       245       255       265       275 ||   |285       295       305    |  315       325       335       345       355       365    |  375       385       395     | 405       415       425       435     | 445       455       465       475       485       495       505       515       525       535      
                                                                                          89-MSE                                             141-MSE|             162-MSEA                    190-MSE                                                                                277-MSE|                         310-MSE                                                     370-MSE                        401 405                                 441-MSE                                                                                                
                                                                                                                                                  146-MSE                                                                                                                             278-MSE                                                                                                                                                                                                                                                                   
                                                                                                                                                                                                                                                                                          282-MSE                                                                                                                                                                                                                                                               


Chain C from PDB  Type:PROTEIN  Length:511
 aligned with Q5L904_BACFN | Q5L904 from UniProtKB/TrEMBL  Length:541

    Alignment length:516
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535      
        Q5L904_BACFN     26 KAPLDEIADDSFWSDETLVKYYVNDLYSEISVDGLQLQENRSDNSVSAQRDKYRASWFKFNYDMVSASDPQDDDVWEDYYVKVRKCNRFFERIGTSTIEESEKSRLTGEVHFLRAMFYFEMVKRYGGVILLDKVLTMEDNWEIPRSSEKECYDFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKLGYELVDGTTPEKYRSIWWTTNKDNKEIIFDVQYKSPDVYNNMMVCNMVTYINDKYGDRGWGGLGPTQELIDAFEMADGTPATQYSQAPADQVFDINTCGIYEGREPRFYANIVFHGSQIFFNADKGAVTVDRYLMDTPDKGDGSLTGYNVWKWIDYDNYNYPYAGAGSPDFSTNWIILRYAEIYLNDAEARLETGDVEGARKAVNMIRQRVGLPDLTESDPEKLRELIRKERRIEFAFEEQRFYDVRRWKIGPETQTTLHGVRFVSPTEFKVTKTDIRTWNDRLYLTPVPHDEIVRSSVLKQNLGY  541
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhh.......hhhhhhhhhhhhhhh........hhhhh..........hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.........hhhhhhhhhhhhhh....eeeeeee.......hhhhhhh..................hhhhhhhh..................eee..........hhhhhhhee....ee........ee...................ee.............-----....eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.eeeeeee....eeeeeeeee...hhhhhh...hhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3qnk C   26 KAPLDEIADDSFWSDETLVKYYVNDLYSEISVDGLQLQENRSDNSVSAQRDKYRASWFKFNYDmVSASDPQDDDVWEDYYVKVRKCNRFFERIGTSTIEESEKSRLTGEVHFLRAmFYFEmVKRYGGVILLDKVLTmEDNWEIPRSSEKECYDFILEDLKKATEmLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKLGYELVDGTTPEKYRSIWWTTNKDNKEIIFDVQYKSPDVYNNmmVCNmVTYINDKYGDRGWGGLGPTQELIDAFEmADGTPATQYSQAPADQVFDINTCGIYEGREPRFYANIVFHGSQIFFNADKGAVTVDRYLmDTPDKGDGSLTGYNVWKWIDYDNYNYPY-----PDFSTNWIILRYAEIYLNDAEARLETGDVEGARKAVNmIRQRVGLPDLTESDPEKLRELIRKERRIEFAFEEQRFYDVRRWKIGPETQTTLHGVRFVSPTEFKVTKTDIRTWNDRLYLTPVPHDEIVRSSVLKQNLGY  541
                                    35        45        55        65        75        85   |    95       105       115       125       135     | 145|      155      |165       175       185    |  195       205       215       225       235       245       255       265       275 ||   |285       295       305    |  315       325       335       345       355       365    |  375       385       395  |    405       415       425       435     | 445       455       465       475       485       495       505       515       525       535      
                                                                                          89-MSE                                             141-MSE|             162-MSE                     190-MSE                                                                                277-MSE|                         310-MSE                                                     370-MSE                     398   404                                  441-MSE                                                                                                
                                                                                                                                                  146-MSE                                                                                                                             278-MSE                                                                                                                                                                                                                                                                   
                                                                                                                                                                                                                                                                                          282-MSE                                                                                                                                                                                                                                                               


Chain D from PDB  Type:PROTEIN  Length:514
 aligned with Q5L904_BACFN | Q5L904 from UniProtKB/TrEMBL  Length:541

    Alignment length:516
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535      
        Q5L904_BACFN     26 KAPLDEIADDSFWSDETLVKYYVNDLYSEISVDGLQLQENRSDNSVSAQRDKYRASWFKFNYDMVSASDPQDDDVWEDYYVKVRKCNRFFERIGTSTIEESEKSRLTGEVHFLRAMFYFEMVKRYGGVILLDKVLTMEDNWEIPRSSEKECYDFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKLGYELVDGTTPEKYRSIWWTTNKDNKEIIFDVQYKSPDVYNNMMVCNMVTYINDKYGDRGWGGLGPTQELIDAFEMADGTPATQYSQAPADQVFDINTCGIYEGREPRFYANIVFHGSQIFFNADKGAVTVDRYLMDTPDKGDGSLTGYNVWKWIDYDNYNYPYAGAGSPDFSTNWIILRYAEIYLNDAEARLETGDVEGARKAVNMIRQRVGLPDLTESDPEKLRELIRKERRIEFAFEEQRFYDVRRWKIGPETQTTLHGVRFVSPTEFKVTKTDIRTWNDRLYLTPVPHDEIVRSSVLKQNLGY  541
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) SusD-like_3-3qnkD05 D:26-217                                                                                                                                                                    ------------------------------------------SusD-3qnkD01 D:260-541                                                                                                                                                                                                                                                                     Pfam domains (1)
           Pfam domains (2) SusD-like_3-3qnkD06 D:26-217                                                                                                                                                                    ------------------------------------------SusD-3qnkD02 D:260-541                                                                                                                                                                                                                                                                     Pfam domains (2)
           Pfam domains (3) SusD-like_3-3qnkD07 D:26-217                                                                                                                                                                    ------------------------------------------SusD-3qnkD03 D:260-541                                                                                                                                                                                                                                                                     Pfam domains (3)
           Pfam domains (4) SusD-like_3-3qnkD08 D:26-217                                                                                                                                                                    ------------------------------------------SusD-3qnkD04 D:260-541                                                                                                                                                                                                                                                                     Pfam domains (4)
         Sec.struct. author ..hhhhh.......hhhhhhhhhhhhhhh........hhhhh..........hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.........hhhhhhhhhhhhhh....eeeeeee.......hhhhhhh..................hhhhhhhh...................ee..........hhhhhhhee....ee........ee...................ee.................--...eeeeeeehhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.eeeeeee....eeeeeeeee...hhhhhh...hhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3qnk D   26 KAPLDEIADDSFWSDETLVKYYVNDLYSEISVDGLQLQENRSDNSVSAQRDKYRASWFKFNYDmVSASDPQDDDVWEDYYVKVRKCNRFFERIGTSTIEESEKSRLTGEVHFLRAmFYFEmVKRYGGVILLDKVLTmEDNWEIPRSSEKECYDFILEDLKKATEmLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKLGYELVDGTTPEKYRSIWWTTNKDNKEIIFDVQYKSPDVYNNmmVCNmVTYINDKYGDRGWGGLGPTQELIDAFEmADGTPATQYSQAPADQVFDINTCGIYEGREPRFYANIVFHGSQIFFNADKGAVTVDRYLmDTPDKGDGSLTGYNVWKWIDYDNYNYPYAGAG--DFSTNWIILRYAEIYLNDAEARLETGDVEGARKAVNmIRQRVGLPDLTESDPEKLRELIRKERRIEFAFEEQRFYDVRRWKIGPETQTTLHGVRFVSPTEFKVTKTDIRTWNDRLYLTPVPHDEIVRSSVLKQNLGY  541
                                    35        45        55        65        75        85   |    95       105       115       125       135     | 145|      155      |165       175       185    |  195       205       215       225       235       245       255       265       275 ||   |285       295       305    |  315       325       335       345       355       365    |  375       385       395      |405       415       425       435     | 445       455       465       475       485       495       505       515       525       535      
                                                                                          89-MSE                                             141-MSE|             162-MSE                     190-MSE                                                                                277-MSE|                         310-MSE                                                     370-MSE                         402  |                                 441-MSE                                                                                                
                                                                                                                                                  146-MSE                                                                                                                             278-MSE                                                                                                                        405                                                                                                                                        
                                                                                                                                                                                                                                                                                          282-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3QNK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3QNK)

(-) Pfam Domains  (2, 8)

Asymmetric Unit
(-)
Clan: TPR (230)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3QNK)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    ACT  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3qnk)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3qnk
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q5L904_BACFN | Q5L904
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q5L904_BACFN | Q5L904
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3QNK)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3QNK)