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3QNK
Biol. Unit 2
Info
Asym.Unit (705 KB)
Biol.Unit 1 (351 KB)
Biol.Unit 2 (350 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A SUSD-LIKE PROTEIN (BF3747) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 2.70 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
08 Feb 11 (Deposition) - 09 Mar 11 (Release) - 24 Dec 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Alpha-Alpha Superhelix, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Hypothetical Susd-Like Protein (Bf3747) From Bacteroides Fragilis Nctc 9343 At 2. 70 A Resolution
To Be Published
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Hetero Components
(3, 30)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
2a: CHLORIDE ION (CLa)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3ag: SELENOMETHIONINE (MSEag)
3ah: SELENOMETHIONINE (MSEah)
3ai: SELENOMETHIONINE (MSEai)
3aj: SELENOMETHIONINE (MSEaj)
3ak: SELENOMETHIONINE (MSEak)
3al: SELENOMETHIONINE (MSEal)
3am: SELENOMETHIONINE (MSEam)
3an: SELENOMETHIONINE (MSEan)
3ao: SELENOMETHIONINE (MSEao)
3ap: SELENOMETHIONINE (MSEap)
3aq: SELENOMETHIONINE (MSEaq)
3ar: SELENOMETHIONINE (MSEar)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
4c: PHOSPHATE ION (PO4c)
4d: PHOSPHATE ION (PO4d)
4e: PHOSPHATE ION (PO4e)
4f: PHOSPHATE ION (PO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
5
Ligand/Ion
ACETATE ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
MSE
22
Mod. Amino Acid
SELENOMETHIONINE
4
PO4
3
Ligand/Ion
PHOSPHATE ION
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Sites
(10, 10)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC4 (SOFTWARE)
03: AC7 (SOFTWARE)
04: AC8 (SOFTWARE)
05: AC9 (SOFTWARE)
06: BC1 (SOFTWARE)
07: BC2 (SOFTWARE)
08: BC3 (SOFTWARE)
09: BC4 (SOFTWARE)
10: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
ARG B:75 , ARG B:79 , TYR B:87 , ASP B:511 , ILE B:512 , ARG C:79 , MSE C:89 , PO4 C:603
BINDING SITE FOR RESIDUE PO4 B 602
02
AC4
SOFTWARE
SER B:91 , ALA B:92 , SER B:93 , HIS B:526 , ARG C:498 , LYS C:506
BINDING SITE FOR RESIDUE PO4 B 604
03
AC7
SOFTWARE
ARG B:79 , MSE B:89 , PO4 B:602 , ARG C:75 , ARG C:79 , TYR C:87 , ASP C:511 , ILE C:512
BINDING SITE FOR RESIDUE PO4 C 603
04
AC8
SOFTWARE
ARG B:498 , LYS B:509 , MSE C:89 , VAL C:90 , ARG C:518
BINDING SITE FOR RESIDUE PO4 C 605
05
AC9
SOFTWARE
ARG B:498 , LYS B:506 , SER C:91 , ALA C:92 , SER C:93 , HIS C:526 , HOH C:675
BINDING SITE FOR RESIDUE PO4 C 606
06
BC1
SOFTWARE
SER C:56 , TYR C:104 , GLU C:145
BINDING SITE FOR RESIDUE ACT C 609
07
BC2
SOFTWARE
LYS C:148 , GLU C:173
BINDING SITE FOR RESIDUE ACT C 610
08
BC3
SOFTWARE
SER C:56 , ASP C:58 , TYR C:104 , ARG C:149 , GLU C:475
BINDING SITE FOR RESIDUE ACT C 611
09
BC4
SOFTWARE
HOH C:673
BINDING SITE FOR RESIDUE ACT C 612
10
BC5
SOFTWARE
ASP D:292 , ARG D:293 , GLY D:294 , TRP D:295 , ASP D:377
BINDING SITE FOR RESIDUE ACT D 613
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_SusD_3qnkD01 (D:260-541)
1b: PFAM_SusD_3qnkD02 (D:260-541)
1c: PFAM_SusD_3qnkD03 (D:260-541)
1d: PFAM_SusD_3qnkD04 (D:260-541)
2a: PFAM_SusD_like_3_3qnkD05 (D:26-217)
2b: PFAM_SusD_like_3_3qnkD06 (D:26-217)
2c: PFAM_SusD_like_3_3qnkD07 (D:26-217)
2d: PFAM_SusD_like_3_3qnkD08 (D:26-217)
View:
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Clans
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Families
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)
(
)
Organisms
(
)
(
)
Clan
:
TPR
(230)
Family
:
SusD
(11)
Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)
(3)
1a
SusD-3qnkD01
D:260-541
1b
SusD-3qnkD02
D:260-541
1c
SusD-3qnkD03
D:260-541
1d
SusD-3qnkD04
D:260-541
Family
:
SusD-like_3
(11)
Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)
(3)
2a
SusD-like_3-3qnkD05
D:26-217
2b
SusD-like_3-3qnkD06
D:26-217
2c
SusD-like_3-3qnkD07
D:26-217
2d
SusD-like_3-3qnkD08
D:26-217
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (705 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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