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(-) Description

Title :  HUMAN CYTOCHROME P450 (CYP) 2D6 - PRINOMASTAT COMPLEX
 
Authors :  A. Wang, C. D. Stout, E. F. Johnson
Date :  03 Feb 11  (Deposition) - 15 Feb 12  (Release) - 18 Jul 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Cyp2D6, P450 2D6, P450, Monooxygenase, Prinomastat, Heme, Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Wang, U. Savas, M. H. Hsu, C. D. Stout, E. F. Johnson
Crystal Structure Of Human Cytochrome P450 2D6 With Prinomastat Bound.
J. Biol. Chem. V. 287 10834 2012
PubMed-ID: 22308038  |  Reference-DOI: 10.1074/JBC.M111.307918

(-) Compounds

Molecule 1 - CYTOCHROME P450 2D6
    ChainsA, B
    EC Number1.14.14.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPCWORI
    Expression System StrainDH5ALPHA
    Expression System Taxid668369
    Expression System Vector TypePLASMID
    FragmentRESIDUES 34-497
    GeneCYP2D6, CYP2DL1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCYPIID6, CYTOCHROME P450-DB1, DEBRISOQUINE 4-HYDROXYLASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2NI1Ligand/IonNICKEL (II) ION
3PN02Ligand/IonPRINOMASTAT

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:101 , PHE A:120 , TRP A:128 , ARG A:132 , ALA A:305 , GLY A:306 , THR A:309 , VAL A:374 , HIS A:376 , LEU A:399 , PRO A:435 , PHE A:436 , SER A:437 , ARG A:441 , CYS A:443 , LEU A:444 , PN0 A:503BINDING SITE FOR RESIDUE HEM A 502
2AC2SOFTWARELEU A:110 , PHE A:120 , GLY A:212 , LEU A:213 , GLU A:216 , GLN A:244 , PHE A:247 , ALA A:300 , ASP A:301 , SER A:304 , ALA A:305 , THR A:309 , PHE A:483 , HEM A:502BINDING SITE FOR RESIDUE PN0 A 503
3AC3SOFTWAREARG B:101 , PHE B:120 , TRP B:128 , ARG B:132 , LEU B:302 , ALA B:305 , GLY B:306 , THR B:309 , THR B:310 , THR B:313 , VAL B:374 , HIS B:376 , LEU B:399 , PRO B:435 , PHE B:436 , SER B:437 , ARG B:441 , CYS B:443 , LEU B:444 , PN0 B:503BINDING SITE FOR RESIDUE HEM B 502
4AC4SOFTWARELEU B:110 , PHE B:120 , GLY B:212 , LEU B:213 , GLU B:216 , GLN B:244 , ALA B:300 , ASP B:301 , SER B:304 , ALA B:305 , PHE B:483 , HEM B:502BINDING SITE FOR RESIDUE PN0 B 503
5AC5SOFTWAREHIS B:258 , ASP B:270 , GLU B:273 , GLU B:287BINDING SITE FOR RESIDUE NI B 600

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3QM4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3QM4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (44, 86)

Asymmetric/Biological Unit (44, 86)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_008336P34SCP2D6_HUMANPolymorphism1065852A/BP34S
02UniProtVAR_001256G42RCP2D6_HUMANPolymorphism5030862A/BG42R
03UniProtVAR_008369A85VCP2D6_HUMANPolymorphism267608310A/BA85V
04UniProtVAR_024720L91MCP2D6_HUMANPolymorphism28371703A/BL91M
05UniProtVAR_024721H94RCP2D6_HUMANPolymorphism28371704A/BH94R
06UniProtVAR_072766V104ACP2D6_HUMANPolymorphism76187628A/BV104A
07UniProtVAR_008337T107ICP2D6_HUMANPolymorphism28371706A/BT107I
08UniProtVAR_024722F120ICP2D6_HUMANPolymorphism1135822A/BF120I
09UniProtVAR_072767L142SCP2D6_HUMANPolymorphism375135093A/BL142S
10UniProtVAR_072768K147RCP2D6_HUMANPolymorphism569229126A/BK147R
11UniProtVAR_024723E155KCP2D6_HUMANPolymorphism28371710A/BE155K
12UniProtVAR_072769C161SCP2D6_HUMANPolymorphism  ---A/BC161S
13UniProtVAR_072770F164LCP2D6_HUMANPolymorphism  ---A/BF164L
14UniProtVAR_008338G169RCP2D6_HUMANPolymorphism5030865A/BG169R
15UniProtVAR_008339G212ECP2D6_HUMANPolymorphism5030866A/BG212E
16UniProtVAR_072771E215KCP2D6_HUMANPolymorphism567606867A/BE215K
17UniProtVAR_072772F219SCP2D6_HUMANPolymorphism371793722A/BF219S
18UniProtVAR_045679L231PCP2D6_HUMANPolymorphism17002853AL231P
19UniProtVAR_008370A237SCP2D6_HUMANPolymorphism28371717AA237S
20UniProtVAR_072773T249PCP2D6_HUMANPolymorphism  ---A/BT249P
21UniProtVAR_008340R296CCP2D6_HUMANPolymorphism16947A/BR296C
22UniProtVAR_008371I297LCP2D6_HUMANPolymorphism  ---A/BI297L
23UniProtVAR_045680A300GCP2D6_HUMANPolymorphism1058170A/BA300G
24UniProtVAR_014633S311LCP2D6_HUMANPolymorphism1800754A/BS311L
25UniProtVAR_008348H324PCP2D6_HUMANPolymorphism5030867A/BH324P
26UniProtVAR_072774V327MCP2D6_HUMANPolymorphism  ---A/BV327M
27UniProtVAR_059150R329LCP2D6_HUMANPolymorphism3915951A/BR329L
28UniProtVAR_072775D336NCP2D6_HUMANPolymorphism745746329A/BD336N
29UniProtVAR_072776D337GCP2D6_HUMANPolymorphism748712690A/BD337G
30UniProtVAR_072777V342MCP2D6_HUMANPolymorphism750996195A/BV342M
31UniProtVAR_008372R343GCP2D6_HUMANPolymorphism267608295A/BR343G
32UniProtVAR_072778R344QCP2D6_HUMANPolymorphism76088846A/BR344Q
33UniProtVAR_045681R365HCP2D6_HUMANPolymorphism1058172A/BR365H
34UniProtVAR_008373I369TCP2D6_HUMANPolymorphism  ---A/BI369T
35UniProtVAR_059151G373SCP2D6_HUMANPolymorphism2856959A/BG373S
36UniProtVAR_008374E410KCP2D6_HUMANPolymorphism769157652A/BE410K
37UniProtVAR_024724E418KCP2D6_HUMANPolymorphism149157808A/BE418K
38UniProtVAR_072779R440CCP2D6_HUMANPolymorphism777560972A/BR440C
39UniProtVAR_072780F457LCP2D6_HUMANPolymorphism  ---A/BF457L
40UniProtVAR_072781H463DCP2D6_HUMANPolymorphism  ---A/BH463D
41UniProtVAR_024725P469ACP2D6_HUMANPolymorphism1135833A/BP469A
42UniProtVAR_024726H478YCP2D6_HUMANPolymorphism28371735A/BH478Y
43UniProtVAR_008341S486TCP2D6_HUMANPolymorphism1135840A/BS486T
44UniProtVAR_072782R497CCP2D6_HUMANPolymorphism370580423A/BR497C

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 2)

Asymmetric/Biological Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CYTOCHROME_P450PS00086 Cytochrome P450 cysteine heme-iron ligand signature.CP2D6_HUMAN436-445
 
  2A:436-445
B:436-445

(-) Exons   (9, 18)

Asymmetric/Biological Unit (9, 18)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000003606081aENSE00001877348chr22:42526908-42526614295CP2D6_HUMAN1-60602A:33-60
B:33-60
28
28
1.1gENST000003606081gENSE00001687273chr22:42525911-42525740172CP2D6_HUMAN61-118582A:61-118
B:61-118
58
58
1.3bENST000003606083bENSE00001624395chr22:42525187-42525035153CP2D6_HUMAN118-169522A:118-169
B:118-169
52
52
1.4bENST000003606084bENSE00001692653chr22:42524946-42524786161CP2D6_HUMAN169-222542A:169-222
B:169-222
54
54
1.5ENST000003606085ENSE00001615055chr22:42524352-42524176177CP2D6_HUMAN223-281592A:223-281
B:223-281 (gaps)
59
59
1.6aENST000003606086aENSE00001669472chr22:42523985-42523844142CP2D6_HUMAN282-329482A:282-329
B:282-329
48
48
1.8bENST000003606088bENSE00001664789chr22:42523636-42523449188CP2D6_HUMAN329-391632A:329-391
B:329-391
63
63
1.9ENST000003606089ENSE00001644816chr22:42522994-42522853142CP2D6_HUMAN392-439482A:392-439
B:392-439
48
48
1.10dENST0000036060810dENSE00001885585chr22:42522754-42522501254CP2D6_HUMAN439-497592A:439-497
B:439-497
59
59

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:465
 aligned with CP2D6_HUMAN | P10635 from UniProtKB/Swiss-Prot  Length:497

    Alignment length:465
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492     
          CP2D6_HUMAN    33 YPPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGPRSQGVFLARYGPAWREQRRFSVSTLRNLGLGKKSLEQWVTEEAACLCAAFANHSGRPFRPNGLLDKAVSNVIASLTCGRRFEYDDPRFLRLLDLAQEGLKEESGFLREVLNAVPVLLHIPALAGKVLRFQKAFLTQLDELLTEHRMTWDPAQPPRDLTEAFLAEMEKAKGNPESSFNDENLRIVVADLFSAGMVTTSTTLAWGLLLMILHPDVQRRVQQEIDDVIGQVRRPEMGDQAHMPYTTAVIHEVQRFGDIVPLGVTHMTSRDIEVQGFRIPKGTTLITNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFVKPEAFLPFSAGRRACLGEPLARMELFLFFTSLLQHFSFSVPTGQPRPSHHGVFAFLVSPSPYELCAVPR 497
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....................hhhhhhhhhhhhh..eeee......eeeehhhhhhhhhhh.hhhhh.....hhhhhhhh.............hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh..hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh........hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.......ee....eee..eee....eeeehhhhhhh...........hhhhhh.......................hhhhhhhhhhhhhhhhhhh.eee...........eee...eee.....eee.. Sec.struct. author
                 SAPs(SNPs) -S-------R------------------------------------------V-----M--R---------A--I------------I---------------------S----R-------K-----S--L----R------------------------------------------E--K---S-----------P-----S-----------P----------------------------------------------CL--G----------L------------P--M-L------NG----MGQ--------------------H---T---S------------------------------------K-------K---------------------C----------------L-----D-----A--------Y-------T----------C SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTOCHROME---------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: A:33-60     Exon 1.1g  PDB: A:61-118 UniProt: 61-118                  --------------------------------------------------Exon 1.4b  PDB: A:169-222 UniProt: 169-222            Exon 1.5  PDB: A:223-281 UniProt: 223-281                  Exon 1.6a  PDB: A:282-329 UniProt: 282-329      -------------------------------------------------------------------------------------------------------------Exon 1.10d  PDB: A:439-497 UniProt: 439-497                 Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------Exon 1.3b  PDB: A:118-169 UniProt: 118-169          ---------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.8b  PDB: A:329-391 UniProt: 329-391                     Exon 1.9  PDB: A:392-439 UniProt: 392-439       ---------------------------------------------------------- Transcript 1 (2)
                 3qm4 A  33 LPPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGPRSQGVFLARYGPAWREQRRFSVSTLRNLGLGKKSLEQWVTEEAACLCAAFANHSGRPFRPNGLLDKAVSNVIASLTCGRRFEYDDPRFLRLLDLAQEGLKEESGFLREVLNAVPVLLHIPALAGKVLRFQKAFLTQLDELLTEHRMTWDPAQPPRDLTEAFLAEMEKAKGNPESSFNDENLRIVVADLFSAGMVTTSTTLAWGLLLMILHPDVQRRVQQEIDDVIGQVRRPEMGDQAHMPYTTAVIHEVQRFGDIVPLGVTHMTSRDIEVQGFRIPKGTTLITNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFVKPEAFLPFSAGRRACLGEPLARMELFLFFTSLLQHFSFSVPTGQPRPSHHGVFAFLVSPSPYELCAVPR 497
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492     

Chain B from PDB  Type:PROTEIN  Length:457
 aligned with CP2D6_HUMAN | P10635 from UniProtKB/Swiss-Prot  Length:497

    Alignment length:465
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492     
          CP2D6_HUMAN    33 YPPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGPRSQGVFLARYGPAWREQRRFSVSTLRNLGLGKKSLEQWVTEEAACLCAAFANHSGRPFRPNGLLDKAVSNVIASLTCGRRFEYDDPRFLRLLDLAQEGLKEESGFLREVLNAVPVLLHIPALAGKVLRFQKAFLTQLDELLTEHRMTWDPAQPPRDLTEAFLAEMEKAKGNPESSFNDENLRIVVADLFSAGMVTTSTTLAWGLLLMILHPDVQRRVQQEIDDVIGQVRRPEMGDQAHMPYTTAVIHEVQRFGDIVPLGVTHMTSRDIEVQGFRIPKGTTLITNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFVKPEAFLPFSAGRRACLGEPLARMELFLFFTSLLQHFSFSVPTGQPRPSHHGVFAFLVSPSPYELCAVPR 497
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhh....hhhhhhhhhhh....eeee......eeeehhhhhhhhhhh.hhhhh.....hhhhhhhh.............hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.hhhhhhhhhh..--------...hhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh........hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.......ee....eee..eee....eeeehhhhhhh...........hhhhhh.......................hhhhhhhhhhhhhhhhhhh.eee...........eee...eee.....eee.. Sec.struct. author
                 SAPs(SNPs) -S-------R------------------------------------------V-----M--R---------A--I------------I---------------------S----R-------K-----S--L----R------------------------------------------E--K---S-----------------------------P----------------------------------------------CL--G----------L------------P--M-L------NG----MGQ--------------------H---T---S------------------------------------K-------K---------------------C----------------L-----D-----A--------Y-------T----------C SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTOCHROME---------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: B:33-60     Exon 1.1g  PDB: B:61-118 UniProt: 61-118                  --------------------------------------------------Exon 1.4b  PDB: B:169-222 UniProt: 169-222            Exon 1.5  PDB: B:223-281 (gaps) UniProt: 223-281           Exon 1.6a  PDB: B:282-329 UniProt: 282-329      -------------------------------------------------------------------------------------------------------------Exon 1.10d  PDB: B:439-497 UniProt: 439-497                 Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------Exon 1.3b  PDB: B:118-169 UniProt: 118-169          ---------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.8b  PDB: B:329-391 UniProt: 329-391                     Exon 1.9  PDB: B:392-439 UniProt: 392-439       ---------------------------------------------------------- Transcript 1 (2)
                 3qm4 B  33 LPPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGPRSQGVFLARYGPAWREQRRFSVSTLRNLGLGKKSLEQWVTEEAACLCAAFANHSGRPFRPNGLLDKAVSNVIASLTCGRRFEYDDPRFLRLLDLAQEGLKEESGFLREVLNAVPV--------GKVLRFQKAFLTQLDELLTEHRMTWDPAQPPRDLTEAFLAEMEKAKGNPESSFNDENLRIVVADLFSAGMVTTSTTLAWGLLLMILHPDVQRRVQQEIDDVIGQVRRPEMGDQAHMPYTTAVIHEVQRFGDIVPLGVTHMTSRDIEVQGFRIPKGTTLITNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFVKPEAFLPFSAGRRACLGEPLARMELFLFFTSLLQHFSFSVPTGQPRPSHHGVFAFLVSPSPYELCAVPR 497
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222      |  -     | 242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492     
                                                                                                                                                                                                                              229      238                                                                                                                                                                                                                                                                   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3QM4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3QM4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3QM4)

(-) Gene Ontology  (34, 34)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (CP2D6_HUMAN | P10635)
molecular function
    GO:0008392    arachidonic acid epoxygenase activity    Catalysis of an NADPH- and oxygen-dependent reaction that converts arachidonic acid to a cis-epoxyeicosatrienoic acid.
    GO:0070330    aromatase activity    Catalysis of the reduction of an aliphatic ring to yield an aromatic ring.
    GO:0008144    drug binding    Interacting selectively and non-covalently with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004497    monooxygenase activity    Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016705    oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen    Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
    GO:0016712    oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen    Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced flavin or flavoprotein and one other donor, and one atom of oxygen is incorporated into one donor.
    GO:0019825    oxygen binding    Interacting selectively and non-covalently with oxygen (O2).
    GO:0008395    steroid hydroxylase activity    Catalysis of the formation of a hydroxyl group on a steroid by incorporation of oxygen from O2.
biological process
    GO:0009822    alkaloid catabolic process    The chemical reactions and pathways resulting in the breakdown of alkaloids, nitrogen containing natural products not otherwise classified as peptides, nonprotein amino acids, amines, cyanogenic glycosides, glucosinolates, cofactors, phytohormones or primary metabolites (such as purine or pyrimidine bases).
    GO:0009820    alkaloid metabolic process    The chemical reactions and pathways involving alkaloids, nitrogen containing natural products which are not otherwise classified as peptides, nonprotein amino acids, amines, cyanogenic glycosides, glucosinolates, cofactors, phytohormones or primary metabolites (such as purine or pyrimidine bases).
    GO:0019369    arachidonic acid metabolic process    The chemical reactions and pathways involving arachidonic acid, a straight chain fatty acid with 20 carbon atoms and four double bonds per molecule. Arachidonic acid is the all-Z-(5,8,11,14)-isomer.
    GO:0009804    coumarin metabolic process    The chemical reactions and pathways involving coumarins, compounds derived from the phenylacrylic skeleton of cinnamic acids.
    GO:0042737    drug catabolic process    The chemical reactions and pathways resulting in the breakdown of a drug, a substance used in the diagnosis, treatment or prevention of a disease.
    GO:0017144    drug metabolic process    The chemical reactions and pathways involving a drug, a substance used in the diagnosis, treatment or prevention of a disease; as used here antibiotic substances (see antibiotic metabolism) are considered to be drugs, even if not used in medical or veterinary practice.
    GO:0046483    heterocycle metabolic process    The chemical reactions and pathways involving heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings).
    GO:0033076    isoquinoline alkaloid metabolic process    The chemical reactions and pathways involving isoquinoline alkaloids, alkaloid compounds that contain bicyclic N-containing aromatic rings and are derived from a 3,4-dihydroxytyramine (dopamine) precursor that undergoes a Schiff base addition with aldehydes of different origin.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0016098    monoterpenoid metabolic process    The chemical reactions and pathways involving monoterpenoid compounds, terpenoids having a C10 skeleton.
    GO:0051100    negative regulation of binding    Any process that stops or reduces the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.
    GO:0090350    negative regulation of cellular organofluorine metabolic process    Any process that decreases the rate, frequency or extent of the chemical reactions and pathways involving organofluorine compounds, as carried out by individual cells.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0070989    oxidative demethylation    The process of removing one or more methyl groups from a molecule, involving the oxidation (i.e. electron loss) of one or more atoms in the substrate.
    GO:0008202    steroid metabolic process    The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.
    GO:0006805    xenobiotic metabolic process    The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide.
cellular component
    GO:0005783    endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
    GO:0005789    endoplasmic reticulum membrane    The lipid bilayer surrounding the endoplasmic reticulum.
    GO:0043231    intracellular membrane-bounded organelle    Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0031090    organelle membrane    A membrane that is one of the two lipid bilayers of an organelle envelope or the outermost membrane of single membrane bound organelle.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        CP2D6_HUMAN | P106352f9q 3tbg 3tda 4wnt 4wnu 4wnv 4wnw 4xry 4xrz 5tft 5tfu

(-) Related Entries Specified in the PDB File

2f9q P450 2D6 WITHOUT SUBSTRATE