Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  INTERLEUKIN-4 MUTANT RGA BOUND TO CYTOKINE RECEPTOR COMMON GAMMA
 
Authors :  D. L. Bates, I. S. Junttila, R. J. Creusot, I. Moraga, P. Lupardus, C. G. F W. E. Paul, K. C. Garcia
Date :  12 Jan 11  (Deposition) - 25 Apr 12  (Release) - 12 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.25
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Cytokine Signaling, Il-4Ralpha, Cytokine-Cytokine Receptor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  I. S. Junttila, R. J. Creusot, I. Moraga, D. L. Bates, M. T. Wong, M. N. Alonso, M. M. Suhoski, P. Lupardus, M. Meier-Schellersheim, E. G. Engleman, P. J. Utz, C. G. Fathman, W. E. Paul, K. C. Garcia
Redirecting Cell-Type Specific Cytokine Responses With Engineered Interleukin-4 Superkines.
Nat. Chem. Biol. V. 8 990 2012
PubMed-ID: 23103943  |  Reference-DOI: 10.1038/NCHEMBIO.1096

(-) Compounds

Molecule 1 - INTERLEUKIN 4
    ChainsA, B
    EngineeredYES
    Expression SystemTRICHOPLUSIA NI
    Expression System Taxid7111
    FragmentUNP RESIDUES 25-153
    GeneIL4
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
 
Molecule 2 - CYTOKINE RECEPTOR COMMON SUBUNIT GAMMA
    ChainsC, D
    EngineeredYES
    Expression SystemTRICHOPLUSIA NI
    Expression System Taxid7111
    FragmentUNP RESIDUES 55-254
    GeneIL2RG
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymINTERLEUKIN-2 RECEPTOR SUBUNIT GAMMA, IL-2 RECEPTOR SUBUNIT GAMMA, IL-2R SUBUNIT GAMMA, IL-2RG, P64

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A  D
Biological Unit 2 (1x) BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
2SO42Ligand/IonSULFATE ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE
2SO41Ligand/IonSULFATE ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE
2SO41Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA B:70 , GLN B:71 , PHE C:43 , TYR C:47 , ASN C:49 , GLN C:94 , NAG C:234BINDING SITE FOR RESIDUE NAG C 233
2AC2SOFTWAREALA B:68 , NAG C:233BINDING SITE FOR RESIDUE NAG C 234
3AC3SOFTWAREASN C:62BINDING SITE FOR RESIDUE NAG C 300
4AC4SOFTWARETHR A:69 , ALA A:70 , GLN A:71 , PHE D:43 , TYR D:47 , ASN D:49 , LEU D:84 , GLN D:94 , NAG D:234BINDING SITE FOR RESIDUE NAG D 233
5AC5SOFTWAREALA A:68 , NAG D:233BINDING SITE FOR RESIDUE NAG D 234
6AC6SOFTWAREASN D:62 , GLU D:88BINDING SITE FOR RESIDUE NAG D 300
7AC7SOFTWAREGLN B:78 , ARG B:81 , PHE B:82 , ARG B:85 , ARG C:200BINDING SITE FOR RESIDUE SO4 B 130
8AC8SOFTWAREGLN A:78 , ARG A:81 , PHE A:82 , ARG A:85 , ARG D:200BINDING SITE FOR RESIDUE SO4 A 130

(-) SS Bonds  (12, 12)

Asymmetric Unit
No.Residues
1A:3 -A:127
2A:24 -A:65
3A:46 -A:99
4B:3 -B:127
5B:24 -B:65
6B:46 -B:99
7C:40 -C:50
8C:80 -C:93
9C:160 -C:209
10D:40 -D:50
11D:80 -D:93
12D:160 -D:209

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Asn C:206 -Pro C:207
2Leu D:33 -Pro D:34
3Asn D:206 -Pro D:207

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (31, 62)

Asymmetric Unit (31, 62)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_020392C27RIL4_HUMANPolymorphism4986964A/BC3R
02UniProtVAR_002669C62GIL2RG_HUMANDisease (XSCID)  ---C/DC40G
03UniProtVAR_002670E68GIL2RG_HUMANDisease (XSCID)  ---C/DE46G
04UniProtVAR_002671E68KIL2RG_HUMANDisease (XSCID)  ---C/DE46K
05UniProtVAR_002672N84KIL2RG_HUMANDisease (XSCID)  ---C/DN62K
06UniProtVAR_002673Y89CIL2RG_HUMANDisease (XSCID)  ---C/DY67C
07UniProtVAR_002674Y105CIL2RG_HUMANDisease (XSCID)193922347C/DY83C
08UniProtVAR_020611E109KIL2RG_HUMANPolymorphism17875899C/DE87K
09UniProtVAR_002675G114DIL2RG_HUMANDisease (XSCID)111033620C/DG92D
10UniProtVAR_002676C115FIL2RG_HUMANDisease (XSCID)  ---C/DC93F
11UniProtVAR_002677C115RIL2RG_HUMANDisease (XSCID)111033622C/DC93R
12UniProtVAR_002678H123PIL2RG_HUMANDisease (XSCID)  ---C/DH101P
13UniProtVAR_002679Y125NIL2RG_HUMANDisease (XSCID)  ---C/DY103N
14UniProtVAR_002680Q144PIL2RG_HUMANDisease (XSCID)  ---C/DQ122P
15UniProtVAR_002681I153NIL2RG_HUMANDisease (XSCID)111033621C/DI131N
16UniProtVAR_002682A156VIL2RG_HUMANDisease (XSCID)  ---C/DA134V
17UniProtVAR_002683L162HIL2RG_HUMANDisease (XSCID)  ---C/DL140H
18UniProtVAR_002684L172PIL2RG_HUMANDisease (XSCID)  ---C/DL150P
19UniProtVAR_002685L172QIL2RG_HUMANDisease (XSCID)  ---C/DL150Q
20UniProtVAR_002686C182RIL2RG_HUMANDisease (XSCID)  ---C/DC160R
21UniProtVAR_002687L183SIL2RG_HUMANDisease (XSCID)  ---C/DL161S
22UniProtVAR_002688R222CIL2RG_HUMANDisease (XCID)111033618C/DR200C
23UniProtVAR_002689R224WIL2RG_HUMANDisease (XSCID)869320658C/DR202W
24UniProtVAR_002690R226CIL2RG_HUMANDisease (XSCID)869320659C/DR204C
25UniProtVAR_002691R226HIL2RG_HUMANDisease (XSCID)869320660C/DR204H
26UniProtVAR_002692F227CIL2RG_HUMANDisease (XSCID)  ---C/DF205C
27UniProtVAR_002693L230PIL2RG_HUMANDisease (XSCID)  ---C/DL208P
28UniProtVAR_002694C231YIL2RG_HUMANDisease (XSCID)  ---C/DC209Y
29UniProtVAR_002695G232RIL2RG_HUMANDisease (XSCID)  ---C/DG210R
30UniProtVAR_002697W240CIL2RG_HUMANDisease (XSCID)  ---C/DW218C
31UniProtVAR_002698S241IIL2RG_HUMANDisease (XSCID)  ---C/DS219I

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (31, 31)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_020392C27RIL4_HUMANPolymorphism4986964AC3R
02UniProtVAR_002669C62GIL2RG_HUMANDisease (XSCID)  ---DC40G
03UniProtVAR_002670E68GIL2RG_HUMANDisease (XSCID)  ---DE46G
04UniProtVAR_002671E68KIL2RG_HUMANDisease (XSCID)  ---DE46K
05UniProtVAR_002672N84KIL2RG_HUMANDisease (XSCID)  ---DN62K
06UniProtVAR_002673Y89CIL2RG_HUMANDisease (XSCID)  ---DY67C
07UniProtVAR_002674Y105CIL2RG_HUMANDisease (XSCID)193922347DY83C
08UniProtVAR_020611E109KIL2RG_HUMANPolymorphism17875899DE87K
09UniProtVAR_002675G114DIL2RG_HUMANDisease (XSCID)111033620DG92D
10UniProtVAR_002676C115FIL2RG_HUMANDisease (XSCID)  ---DC93F
11UniProtVAR_002677C115RIL2RG_HUMANDisease (XSCID)111033622DC93R
12UniProtVAR_002678H123PIL2RG_HUMANDisease (XSCID)  ---DH101P
13UniProtVAR_002679Y125NIL2RG_HUMANDisease (XSCID)  ---DY103N
14UniProtVAR_002680Q144PIL2RG_HUMANDisease (XSCID)  ---DQ122P
15UniProtVAR_002681I153NIL2RG_HUMANDisease (XSCID)111033621DI131N
16UniProtVAR_002682A156VIL2RG_HUMANDisease (XSCID)  ---DA134V
17UniProtVAR_002683L162HIL2RG_HUMANDisease (XSCID)  ---DL140H
18UniProtVAR_002684L172PIL2RG_HUMANDisease (XSCID)  ---DL150P
19UniProtVAR_002685L172QIL2RG_HUMANDisease (XSCID)  ---DL150Q
20UniProtVAR_002686C182RIL2RG_HUMANDisease (XSCID)  ---DC160R
21UniProtVAR_002687L183SIL2RG_HUMANDisease (XSCID)  ---DL161S
22UniProtVAR_002688R222CIL2RG_HUMANDisease (XCID)111033618DR200C
23UniProtVAR_002689R224WIL2RG_HUMANDisease (XSCID)869320658DR202W
24UniProtVAR_002690R226CIL2RG_HUMANDisease (XSCID)869320659DR204C
25UniProtVAR_002691R226HIL2RG_HUMANDisease (XSCID)869320660DR204H
26UniProtVAR_002692F227CIL2RG_HUMANDisease (XSCID)  ---DF205C
27UniProtVAR_002693L230PIL2RG_HUMANDisease (XSCID)  ---DL208P
28UniProtVAR_002694C231YIL2RG_HUMANDisease (XSCID)  ---DC209Y
29UniProtVAR_002695G232RIL2RG_HUMANDisease (XSCID)  ---DG210R
30UniProtVAR_002697W240CIL2RG_HUMANDisease (XSCID)  ---DW218C
31UniProtVAR_002698S241IIL2RG_HUMANDisease (XSCID)  ---DS219I

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (31, 31)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_020392C27RIL4_HUMANPolymorphism4986964BC3R
02UniProtVAR_002669C62GIL2RG_HUMANDisease (XSCID)  ---CC40G
03UniProtVAR_002670E68GIL2RG_HUMANDisease (XSCID)  ---CE46G
04UniProtVAR_002671E68KIL2RG_HUMANDisease (XSCID)  ---CE46K
05UniProtVAR_002672N84KIL2RG_HUMANDisease (XSCID)  ---CN62K
06UniProtVAR_002673Y89CIL2RG_HUMANDisease (XSCID)  ---CY67C
07UniProtVAR_002674Y105CIL2RG_HUMANDisease (XSCID)193922347CY83C
08UniProtVAR_020611E109KIL2RG_HUMANPolymorphism17875899CE87K
09UniProtVAR_002675G114DIL2RG_HUMANDisease (XSCID)111033620CG92D
10UniProtVAR_002676C115FIL2RG_HUMANDisease (XSCID)  ---CC93F
11UniProtVAR_002677C115RIL2RG_HUMANDisease (XSCID)111033622CC93R
12UniProtVAR_002678H123PIL2RG_HUMANDisease (XSCID)  ---CH101P
13UniProtVAR_002679Y125NIL2RG_HUMANDisease (XSCID)  ---CY103N
14UniProtVAR_002680Q144PIL2RG_HUMANDisease (XSCID)  ---CQ122P
15UniProtVAR_002681I153NIL2RG_HUMANDisease (XSCID)111033621CI131N
16UniProtVAR_002682A156VIL2RG_HUMANDisease (XSCID)  ---CA134V
17UniProtVAR_002683L162HIL2RG_HUMANDisease (XSCID)  ---CL140H
18UniProtVAR_002684L172PIL2RG_HUMANDisease (XSCID)  ---CL150P
19UniProtVAR_002685L172QIL2RG_HUMANDisease (XSCID)  ---CL150Q
20UniProtVAR_002686C182RIL2RG_HUMANDisease (XSCID)  ---CC160R
21UniProtVAR_002687L183SIL2RG_HUMANDisease (XSCID)  ---CL161S
22UniProtVAR_002688R222CIL2RG_HUMANDisease (XCID)111033618CR200C
23UniProtVAR_002689R224WIL2RG_HUMANDisease (XSCID)869320658CR202W
24UniProtVAR_002690R226CIL2RG_HUMANDisease (XSCID)869320659CR204C
25UniProtVAR_002691R226HIL2RG_HUMANDisease (XSCID)869320660CR204H
26UniProtVAR_002692F227CIL2RG_HUMANDisease (XSCID)  ---CF205C
27UniProtVAR_002693L230PIL2RG_HUMANDisease (XSCID)  ---CL208P
28UniProtVAR_002694C231YIL2RG_HUMANDisease (XSCID)  ---CC209Y
29UniProtVAR_002695G232RIL2RG_HUMANDisease (XSCID)  ---CG210R
30UniProtVAR_002697W240CIL2RG_HUMANDisease (XSCID)  ---CW218C
31UniProtVAR_002698S241IIL2RG_HUMANDisease (XSCID)  ---CS219I

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (3, 6)

Asymmetric Unit (3, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1INTERLEUKIN_4_13PS00838 Interleukins -4 and -13 signature.IL4_HUMAN31-56
 
  2A:7-32
B:7-32
2FN3PS50853 Fibronectin type-III domain profile.IL2RG_HUMAN156-253
 
  2C:134-226
D:134-226
3HEMATOPO_REC_S_F1PS01355 Short hematopoietin receptor family 1 signature.IL2RG_HUMAN213-246
 
  2C:191-224
D:192-224
Biological Unit 1 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1INTERLEUKIN_4_13PS00838 Interleukins -4 and -13 signature.IL4_HUMAN31-56
 
  1A:7-32
-
2FN3PS50853 Fibronectin type-III domain profile.IL2RG_HUMAN156-253
 
  1-
D:134-226
3HEMATOPO_REC_S_F1PS01355 Short hematopoietin receptor family 1 signature.IL2RG_HUMAN213-246
 
  1-
D:192-224
Biological Unit 2 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1INTERLEUKIN_4_13PS00838 Interleukins -4 and -13 signature.IL4_HUMAN31-56
 
  1-
B:7-32
2FN3PS50853 Fibronectin type-III domain profile.IL2RG_HUMAN156-253
 
  1C:134-226
-
3HEMATOPO_REC_S_F1PS01355 Short hematopoietin receptor family 1 signature.IL2RG_HUMAN213-246
 
  1C:191-224
-

(-) Exons   (8, 16)

Asymmetric Unit (8, 16)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000002314491aENSE00001334422chr5:132009678-132009877200IL4_HUMAN1-45452A:3-21
B:3-21
19
19
1.2bENST000002314492bENSE00000763068chr5:132010151-13201019848IL4_HUMAN46-61162A:22-37
B:22-37
16
16
1.3bENST000002314493bENSE00000763067chr5:132015406-132015582177IL4_HUMAN62-120592A:38-96
B:38-96
59
59
1.4bENST000002314494bENSE00000854399chr5:132018178-132018368191IL4_HUMAN121-153332A:97-127 (gaps)
B:97-127
31
31

2.2aENST000003742022aENSE00000979104X:70331481-70331275207IL2RG_HUMAN1-39390--
2.2jENST000003742022jENSE00001762572X:70330900-70330747154IL2RG_HUMAN39-90522C:33-68 (gaps)
D:33-68 (gaps)
36
36
2.3bENST000003742023bENSE00001775873X:70330538-70330354185IL2RG_HUMAN90-152632C:68-130
D:68-130 (gaps)
63
63
2.3eENST000003742023eENSE00001729247X:70330145-70330006140IL2RG_HUMAN152-198472C:130-176
D:130-176 (gaps)
47
47
2.4aENST000003742024aENSE00001636586X:70329240-70329078163IL2RG_HUMAN199-253552C:177-226
D:177-226 (gaps)
50
50
2.5bENST000003742025bENSE00001782907X:70328545-7032844997IL2RG_HUMAN253-285330--
2.5dENST000003742025dENSE00001629003X:70328196-7032812770IL2RG_HUMAN285-308240--
2.5hENST000003742025hENSE00001462774X:70327771-70327254518IL2RG_HUMAN309-369610--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:123
 aligned with D4HNR6_HUMAN | D4HNR6 from UniProtKB/TrEMBL  Length:153

    Alignment length:125
                                    36        46        56        66        76        86        96       106       116       126       136       146     
         D4HNR6_HUMAN    27 CDITLQEIIKTLNSLTEQKTLCTELTVTDIFAASKNTTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGLNSCPVKEANQSTLENFLERLKTIMREKYSKC 151
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh..hhhh.ee..........hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh........--.eehhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) R---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qb7 A   3 CDITLQEIIKTLNSLTEQKTLCTELTVTDIFAASKNTTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGLNSCPVKE--QSTLENFLERLRVIMQSKWFKC 127
                                    12        22        32        42        52        62        72        82        92       102|  |   112       122     
                                                                                                                              103  |                     
                                                                                                                                 106                     

Chain A from PDB  Type:PROTEIN  Length:123
 aligned with IL4_HUMAN | P05112 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:125
                                    36        46        56        66        76        86        96       106       116       126       136       146     
            IL4_HUMAN    27 CDITLQEIIKTLNSLTEQKTLCTELTVTDIFAASKNTTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGLNSCPVKEANQSTLENFLERLKTIMREKYSKC 151
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh..hhhh.ee..........hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh........--.eehhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) R---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----INTERLEUKIN_4_13          ----------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1a          Exon 1.2b       Exon 1.3b  PDB: A:38-96 UniProt: 62-120                    Exon 1.4b  PDB: A:97-127 (gaps) Transcript 1
                 3qb7 A   3 CDITLQEIIKTLNSLTEQKTLCTELTVTDIFAASKNTTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGLNSCPVKE--QSTLENFLERLRVIMQSKWFKC 127
                                    12        22        32        42        52        62        72        82        92       102|  |   112       122     
                                                                                                                              103  |                     
                                                                                                                                 106                     

Chain B from PDB  Type:PROTEIN  Length:125
 aligned with D4HNR6_HUMAN | D4HNR6 from UniProtKB/TrEMBL  Length:153

    Alignment length:125
                                    36        46        56        66        76        86        96       106       116       126       136       146     
         D4HNR6_HUMAN    27 CDITLQEIIKTLNSLTEQKTLCTELTVTDIFAASKNTTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGLNSCPVKEANQSTLENFLERLKTIMREKYSKC 151
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh........eee.........hhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeehhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) R---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qb7 B   3 CDITLQEIIKTLNSLTEQKTLCTELTVTDIFAASKNTTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGLNSCPVKEANQSTLENFLERLRVIMQSKWFKC 127
                                    12        22        32        42        52        62        72        82        92       102       112       122     

Chain B from PDB  Type:PROTEIN  Length:125
 aligned with IL4_HUMAN | P05112 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:125
                                    36        46        56        66        76        86        96       106       116       126       136       146     
            IL4_HUMAN    27 CDITLQEIIKTLNSLTEQKTLCTELTVTDIFAASKNTTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGLNSCPVKEANQSTLENFLERLKTIMREKYSKC 151
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh........eee.........hhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeehhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) R---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----INTERLEUKIN_4_13          ----------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1a          Exon 1.2b       Exon 1.3b  PDB: B:38-96 UniProt: 62-120                    Exon 1.4b  PDB: B:97-127        Transcript 1
                 3qb7 B   3 CDITLQEIIKTLNSLTEQKTLCTELTVTDIFAASKNTTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGLNSCPVKEANQSTLENFLERLRVIMQSKWFKC 127
                                    12        22        32        42        52        62        72        82        92       102       112       122     

Chain C from PDB  Type:PROTEIN  Length:191
 aligned with IL2RG_HUMAN | P31785 from UniProtKB/Swiss-Prot  Length:369

    Alignment length:194
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244    
          IL2RG_HUMAN    55 LPLPEVQCFVFNVEYMNCTWNSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLNHCLEHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGS 248
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee...eeeeee..---......eeeeee........ee...eeee..eeeeeeehhhhh.....eeeeee.......eeeeee.....ee....eeeeeee.....eeeeee...hhhhheeeeeee.......eeeee.....eee........eeeeeeee.................eee.. Sec.struct. author
             SAPs(SNPs) (1) -------G-----G---------------K----C---------------C---K----DF-------P-N------------------P--------N--V-----H---------P---------RS--------------------------------------C-W-CC--PYR-------CI------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------K----------------------------------------------R--------------------------------------------------------Q-----------------------------------------------------H---------------------- SAPs(SNPs) (2)
                PROSITE (1) -----------------------------------------------------------------------------------------------------FN3  PDB: C:134-226 UniProt: 156-253                                                          PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------HEMATOPO_REC_S_F1  PDB: C:191-224 -- PROSITE (2)
           Transcript 2 (1) Exon 2.2j  PDB: C:33-68 (gaps)      -------------------------------------------------------------Exon 2.3e  PDB: C:130-176 UniProt: 152-198     Exon 2.4a  PDB: C:177-226 UniProt: 199-253         Transcript 2 (1)
           Transcript 2 (2) -----------------------------------Exon 2.3b  PDB: C:68-130 UniProt: 90-152                       ------------------------------------------------------------------------------------------------ Transcript 2 (2)
                 3qb7 C  33 LPLPEVQCFVFNVEYMNCTWQS---PQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLNHCLEHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGS 226
                                    42        52 |   |  62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222    
                                                54  58                                                                                                                                                                        

Chain D from PDB  Type:PROTEIN  Length:183
 aligned with IL2RG_HUMAN | P31785 from UniProtKB/Swiss-Prot  Length:369

    Alignment length:194
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244    
          IL2RG_HUMAN    55 LPLPEVQCFVFNVEYMNCTWNSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLNHCLEHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGS 248
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee...eeeeee.......--..eeeeee....---.ee...eee....eeeeeee.hhh.....eeeeee.......eeeeeehhhhh......eeeeee..---..eeeee.......eeeeeeee.......eeeee....eee.---.....eeeeeeeee................eee.. Sec.struct. author
             SAPs(SNPs) (1) -------G-----G---------------K----C---------------C---K----DF-------P-N------------------P--------N--V-----H---------P---------RS--------------------------------------C-W-CC--PYR-------CI------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------K----------------------------------------------R--------------------------------------------------------Q-----------------------------------------------------H---------------------- SAPs(SNPs) (2)
                PROSITE (1) -----------------------------------------------------------------------------------------------------FN3  PDB: D:134-226 UniProt: 156-253                                                          PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------HEMATOPO_REC_S_F1  PDB: D:192-224 -- PROSITE (2)
           Transcript 2 (1) Exon 2.2j  PDB: D:33-68 (gaps)      -------------------------------------------------------------Exon 2.3e  PDB: D:130-176 (gaps)               Exon 2.4a  PDB: D:177-226 (gaps) UniProt: 199-253  Transcript 2 (1)
           Transcript 2 (2) -----------------------------------Exon 2.3b  PDB: D:68-130 (gaps) UniProt: 90-152                ------------------------------------------------------------------------------------------------ Transcript 2 (2)
                 3qb7 D  33 LPLPEVQCFVFNVEYMNCTWQSSSEPQ--NLTLHYWYKNSD---VQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKL---QLELNWNNRFLNHCLEHLVQYRTDWDHSWTEQSVDYRHKFSL---DGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGS 226
                                    42        52      | 62        72|   |   82        92       102       112       122       132       142|   |  152       162       172       182     | 192       202       212       222    
                                                     59 62         73  77                                                               143 147                                      188 192                                  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3QB7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3QB7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3QB7)

(-) Gene Ontology  (97, 158)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (IL4_HUMAN | P05112)
molecular function
    GO:0005125    cytokine activity    Functions to control the survival, growth, differentiation and effector function of tissues and cells.
    GO:0005126    cytokine receptor binding    Interacting selectively and non-covalently with a cytokine receptor.
    GO:0008083    growth factor activity    The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation.
    GO:0005136    interleukin-4 receptor binding    Interacting selectively and non-covalently with the interleukin-4 receptor.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0042113    B cell activation    The change in morphology and behavior of a mature or immature B cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific.
    GO:0031296    B cell costimulation    The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the B cell receptor to augment B cell activation.
    GO:0030183    B cell differentiation    The process in which a precursor cell type acquires the specialized features of a B cell. A B cell is a lymphocyte of B lineage with the phenotype CD19-positive and capable of B cell mediated immunity.
    GO:0002296    T-helper 1 cell lineage commitment    The process in which a CD4-positive, alpha-beta T cell becomes committed to becoming a T-helper 1 cell, a CD4-positive, alpha-beta T cell specialized to promote immunological processes often associated with resistance to intracellular bacteria, fungi, and protozoa, and pathological conditions such as arthritis.
    GO:0035745    T-helper 2 cell cytokine production    Any process that contributes to cytokine production by a T-helper 2 cell.
    GO:0045064    T-helper 2 cell differentiation    The process in which a relatively unspecialized T cell acquires specialized features of a T-helper 2 (Th2) cell. A Th2 cell is a CD4-positive, alpha-beta T cell that has the phenotype GATA-3-positive and produces interleukin-4.
    GO:0006968    cellular defense response    A defense response that is mediated by cells.
    GO:0071288    cellular response to mercury ion    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mercury ion stimulus.
    GO:0006935    chemotaxis    The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).
    GO:0008203    cholesterol metabolic process    The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues.
    GO:0045189    connective tissue growth factor biosynthetic process    The chemical reactions and pathways resulting in the formation of CTGF, produced by human umbilical vein endothelial cells and by skin fibroblasts after activation with TGF-beta.
    GO:0042832    defense response to protozoan    Reactions triggered in response to the presence of a protozoan that act to protect the cell or organism.
    GO:0097028    dendritic cell differentiation    The process in which a precursor cell type acquires the specialized features of a dendritic cell. A dendritic cell is a leukocyte of dendritic lineage specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation.
    GO:0097192    extrinsic apoptotic signaling pathway in absence of ligand    A series of molecular signals in which a signal is conveyed from the cell surface to trigger the apoptotic death of a cell. The pathway starts with withdrawal of a ligand from a cell surface receptor, and ends when the execution phase of apoptosis is triggered.
    GO:0007565    female pregnancy    The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth.
    GO:0006955    immune response    Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
    GO:0002227    innate immune response in mucosa    Any process of the innate immune response that takes place in the mucosal tissues.
    GO:0001774    microglial cell activation    The change in morphology and behavior of a microglial cell resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor.
    GO:0043011    myeloid dendritic cell differentiation    The process in which a monocyte acquires the specialized features of a dendritic cell, an immunocompetent cell of the lymphoid and hemopoietic systems and skin.
    GO:0050868    negative regulation of T cell activation    Any process that stops, prevents, or reduces the frequency, rate or extent of T cell activation.
    GO:2000320    negative regulation of T-helper 17 cell differentiation    Any process that stops, prevents or reduces the frequency, rate or extent of T-helper 17 cell differentiation.
    GO:0002674    negative regulation of acute inflammatory response    Any process that stops, prevents, or reduces the frequency, rate, or extent of an acute inflammatory response.
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:0002677    negative regulation of chronic inflammatory response    Any process that stops, prevents, or reduces the frequency, rate, or extent of a chronic inflammatory response.
    GO:1903660    negative regulation of complement-dependent cytotoxicity    Any process that stops, prevents or reduces the frequency, rate or extent of complement-dependent cytotoxicity.
    GO:2000352    negative regulation of endothelial cell apoptotic process    Any process that stops, prevents or reduces the frequency, rate or extent of endothelial cell apoptotic process.
    GO:0010633    negative regulation of epithelial cell migration    Any process that stops, prevents, or reduces the frequency, rate or extent of epithelial cell migration.
    GO:2001237    negative regulation of extrinsic apoptotic signaling pathway    Any process that stops, prevents or reduces the frequency, rate or extent of extrinsic apoptotic signaling pathway.
    GO:0043031    negative regulation of macrophage activation    Any process that stops, prevents, or reduces the frequency, rate or extent of macrophage activation.
    GO:0045019    negative regulation of nitric oxide biosynthetic process    Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide.
    GO:0045671    negative regulation of osteoclast differentiation    Any process that stops, prevents, or reduces the frequency, rate or extent of osteoclast differentiation.
    GO:0045892    negative regulation of transcription, DNA-templated    Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0070351    negative regulation of white fat cell proliferation    Any process that stops or decreases the rate or extent of white fat cell proliferation.
    GO:0050871    positive regulation of B cell activation    Any process that activates or increases the frequency, rate or extent of B cell activation.
    GO:0030890    positive regulation of B cell proliferation    Any process that activates or increases the rate or extent of B cell proliferation.
    GO:0045348    positive regulation of MHC class II biosynthetic process    Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of MHC class II.
    GO:0045582    positive regulation of T cell differentiation    Any process that activates or increases the frequency, rate or extent of T cell differentiation.
    GO:0042102    positive regulation of T cell proliferation    Any process that activates or increases the rate or extent of T cell proliferation.
    GO:0042104    positive regulation of activated T cell proliferation    Any process that activates or increases the rate or extent of activated T cell proliferation.
    GO:0008284    positive regulation of cell proliferation    Any process that activates or increases the rate or extent of cell proliferation.
    GO:0045080    positive regulation of chemokine biosynthetic process    Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chemokines.
    GO:0002230    positive regulation of defense response to virus by host    Any host process that results in the promotion of antiviral immune response mechanisms, thereby limiting viral replication.
    GO:2000424    positive regulation of eosinophil chemotaxis    Any process that activates or increases the frequency, rate or extent of eosinophil chemotaxis.
    GO:0002639    positive regulation of immunoglobulin production    Any process that activates or increases the frequency, rate, or extent of immunoglobulin production.
    GO:0032733    positive regulation of interleukin-10 production    Any process that activates or increases the frequency, rate, or extent of interleukin-10 production.
    GO:0032736    positive regulation of interleukin-13 production    Any process that activates or increases the frequency, rate, or extent of interleukin-13 production.
    GO:0048295    positive regulation of isotype switching to IgE isotypes    Any process that activates or increases the frequency, rate or extent of isotype switching to IgE isotypes.
    GO:0048304    positive regulation of isotype switching to IgG isotypes    Any process that activates or increases the frequency, rate or extent of isotype switching to IgG isotypes.
    GO:0043306    positive regulation of mast cell degranulation    Any process that activates or increases the frequency, rate or extent of mast cell degranulation.
    GO:0071677    positive regulation of mononuclear cell migration    Any process that increases the rate, frequency or extent of mononuclear cell migration. Mononuclear cell migration is the movement of a mononuclear cell within or between different tissues and organs of the body.
    GO:1901741    positive regulation of myoblast fusion    Any process that activates or increases the frequency, rate or extent of myoblast fusion.
    GO:0050731    positive regulation of peptidyl-tyrosine phosphorylation    Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine.
    GO:0001934    positive regulation of protein phosphorylation    Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein.
    GO:0051091    positive regulation of sequence-specific DNA binding transcription factor activity    Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription.
    GO:0045944    positive regulation of transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0045893    positive regulation of transcription, DNA-templated    Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0050776    regulation of immune response    Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus.
    GO:0050727    regulation of inflammatory response    Any process that modulates the frequency, rate or extent of the inflammatory response, the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents.
    GO:0045191    regulation of isotype switching    Any process that modulates the frequency, rate or extent of isotype switching.
    GO:0042325    regulation of phosphorylation    Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule.
    GO:0010155    regulation of proton transport    Any process that modulates the frequency, rate or extent of proton transport into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0034097    response to cytokine    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus.
    GO:0042493    response to drug    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
    GO:0045471    response to ethanol    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus.
    GO:0007584    response to nutrient    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus.
    GO:0014070    response to organic cyclic compound    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus.
    GO:0060041    retina development in camera-type eye    The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates.
    GO:0042092    type 2 immune response    An immune response which is associated with resistance to extracellular organisms such as helminths and pathological conditions such as allergy, which is orchestrated by the production of particular cytokines, most notably IL-4, IL-5, IL-10, and IL-13, by any of a variety of cell types including T-helper 2 cells, eosinophils, basophils, mast cells, and nuocytes, resulting in enhanced production of certain antibody isotypes and other effects.
cellular component
    GO:0009897    external side of plasma membrane    The leaflet of the plasma membrane that faces away from the cytoplasm and any proteins embedded or anchored in it or attached to its surface.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

Chain A,B   (D4HNR6_HUMAN | D4HNR6)
molecular function
    GO:0005125    cytokine activity    Functions to control the survival, growth, differentiation and effector function of tissues and cells.
    GO:0005126    cytokine receptor binding    Interacting selectively and non-covalently with a cytokine receptor.
    GO:0008083    growth factor activity    The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation.
    GO:0005136    interleukin-4 receptor binding    Interacting selectively and non-covalently with the interleukin-4 receptor.
biological process
    GO:0042113    B cell activation    The change in morphology and behavior of a mature or immature B cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific.
    GO:0031296    B cell costimulation    The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the B cell receptor to augment B cell activation.
    GO:0002296    T-helper 1 cell lineage commitment    The process in which a CD4-positive, alpha-beta T cell becomes committed to becoming a T-helper 1 cell, a CD4-positive, alpha-beta T cell specialized to promote immunological processes often associated with resistance to intracellular bacteria, fungi, and protozoa, and pathological conditions such as arthritis.
    GO:0045064    T-helper 2 cell differentiation    The process in which a relatively unspecialized T cell acquires specialized features of a T-helper 2 (Th2) cell. A Th2 cell is a CD4-positive, alpha-beta T cell that has the phenotype GATA-3-positive and produces interleukin-4.
    GO:0071288    cellular response to mercury ion    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mercury ion stimulus.
    GO:0008203    cholesterol metabolic process    The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues.
    GO:0042832    defense response to protozoan    Reactions triggered in response to the presence of a protozoan that act to protect the cell or organism.
    GO:0097192    extrinsic apoptotic signaling pathway in absence of ligand    A series of molecular signals in which a signal is conveyed from the cell surface to trigger the apoptotic death of a cell. The pathway starts with withdrawal of a ligand from a cell surface receptor, and ends when the execution phase of apoptosis is triggered.
    GO:0007565    female pregnancy    The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth.
    GO:0006955    immune response    Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
    GO:0002227    innate immune response in mucosa    Any process of the innate immune response that takes place in the mucosal tissues.
    GO:0001774    microglial cell activation    The change in morphology and behavior of a microglial cell resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor.
    GO:0050868    negative regulation of T cell activation    Any process that stops, prevents, or reduces the frequency, rate or extent of T cell activation.
    GO:2000320    negative regulation of T-helper 17 cell differentiation    Any process that stops, prevents or reduces the frequency, rate or extent of T-helper 17 cell differentiation.
    GO:0002674    negative regulation of acute inflammatory response    Any process that stops, prevents, or reduces the frequency, rate, or extent of an acute inflammatory response.
    GO:0002677    negative regulation of chronic inflammatory response    Any process that stops, prevents, or reduces the frequency, rate, or extent of a chronic inflammatory response.
    GO:2001237    negative regulation of extrinsic apoptotic signaling pathway    Any process that stops, prevents or reduces the frequency, rate or extent of extrinsic apoptotic signaling pathway.
    GO:0043031    negative regulation of macrophage activation    Any process that stops, prevents, or reduces the frequency, rate or extent of macrophage activation.
    GO:0045019    negative regulation of nitric oxide biosynthetic process    Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide.
    GO:0045671    negative regulation of osteoclast differentiation    Any process that stops, prevents, or reduces the frequency, rate or extent of osteoclast differentiation.
    GO:0070351    negative regulation of white fat cell proliferation    Any process that stops or decreases the rate or extent of white fat cell proliferation.
    GO:0050871    positive regulation of B cell activation    Any process that activates or increases the frequency, rate or extent of B cell activation.
    GO:0030890    positive regulation of B cell proliferation    Any process that activates or increases the rate or extent of B cell proliferation.
    GO:0045348    positive regulation of MHC class II biosynthetic process    Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of MHC class II.
    GO:0042102    positive regulation of T cell proliferation    Any process that activates or increases the rate or extent of T cell proliferation.
    GO:0042104    positive regulation of activated T cell proliferation    Any process that activates or increases the rate or extent of activated T cell proliferation.
    GO:0008284    positive regulation of cell proliferation    Any process that activates or increases the rate or extent of cell proliferation.
    GO:0045080    positive regulation of chemokine biosynthetic process    Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chemokines.
    GO:0002230    positive regulation of defense response to virus by host    Any host process that results in the promotion of antiviral immune response mechanisms, thereby limiting viral replication.
    GO:2000424    positive regulation of eosinophil chemotaxis    Any process that activates or increases the frequency, rate or extent of eosinophil chemotaxis.
    GO:0002639    positive regulation of immunoglobulin production    Any process that activates or increases the frequency, rate, or extent of immunoglobulin production.
    GO:0032733    positive regulation of interleukin-10 production    Any process that activates or increases the frequency, rate, or extent of interleukin-10 production.
    GO:0048295    positive regulation of isotype switching to IgE isotypes    Any process that activates or increases the frequency, rate or extent of isotype switching to IgE isotypes.
    GO:0048304    positive regulation of isotype switching to IgG isotypes    Any process that activates or increases the frequency, rate or extent of isotype switching to IgG isotypes.
    GO:0043306    positive regulation of mast cell degranulation    Any process that activates or increases the frequency, rate or extent of mast cell degranulation.
    GO:0071677    positive regulation of mononuclear cell migration    Any process that increases the rate, frequency or extent of mononuclear cell migration. Mononuclear cell migration is the movement of a mononuclear cell within or between different tissues and organs of the body.
    GO:1901741    positive regulation of myoblast fusion    Any process that activates or increases the frequency, rate or extent of myoblast fusion.
    GO:0050731    positive regulation of peptidyl-tyrosine phosphorylation    Any process that activates or increases the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine.
    GO:0001934    positive regulation of protein phosphorylation    Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein.
    GO:0051091    positive regulation of sequence-specific DNA binding transcription factor activity    Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription.
    GO:0045944    positive regulation of transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0045893    positive regulation of transcription, DNA-templated    Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0050776    regulation of immune response    Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus.
    GO:0050727    regulation of inflammatory response    Any process that modulates the frequency, rate or extent of the inflammatory response, the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents.
    GO:0010155    regulation of proton transport    Any process that modulates the frequency, rate or extent of proton transport into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0034097    response to cytokine    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus.
    GO:0042493    response to drug    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
    GO:0045471    response to ethanol    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus.
    GO:0007584    response to nutrient    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus.
    GO:0014070    response to organic cyclic compound    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus.
    GO:0060041    retina development in camera-type eye    The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates.
cellular component
    GO:0009897    external side of plasma membrane    The leaflet of the plasma membrane that faces away from the cytoplasm and any proteins embedded or anchored in it or attached to its surface.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

Chain C,D   (IL2RG_HUMAN | P31785)
molecular function
    GO:0005088    Ras guanyl-nucleotide exchange factor activity    Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Ras superfamily. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
    GO:0004896    cytokine receptor activity    Combining with a cytokine and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.
    GO:0019976    interleukin-2 binding    Interacting selectively and non-covalently with interleukin-2.
    GO:0004911    interleukin-2 receptor activity    Combining with interleukin-2 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.
    GO:0004913    interleukin-4 receptor activity    Combining with interleukin-4 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.
    GO:0019982    interleukin-7 binding    Interacting selectively and non-covalently with interleukin-7.
    GO:0004917    interleukin-7 receptor activity    Combining with interleukin-7 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0000165    MAPK cascade    An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP Kinase-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell.
    GO:0019221    cytokine-mediated signaling pathway    A series of molecular signals initiated by the binding of a cytokine to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0006955    immune response    Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
    GO:0038110    interleukin-2-mediated signaling pathway    A series of molecular signals initiated by the binding of interleukin-2 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0035771    interleukin-4-mediated signaling pathway    A series of molecular signals initiated by the binding of interleukin-4 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0038111    interleukin-7-mediated signaling pathway    A series of molecular signals initiated by the binding of interleukin-7 to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0043547    positive regulation of GTPase activity    Any process that activates or increases the activity of a GTPase.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0009897    external side of plasma membrane    The leaflet of the plasma membrane that faces away from the cytoplasm and any proteins embedded or anchored in it or attached to its surface.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    NAG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Asn C:206 - Pro C:207   [ RasMol ]  
    Asn D:206 - Pro D:207   [ RasMol ]  
    Leu D:33 - Pro D:34   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3qb7
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  D4HNR6_HUMAN | D4HNR6
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  IL2RG_HUMAN | P31785
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  IL4_HUMAN | P05112
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  300400
    Disease InformationOMIM
  312863
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  D4HNR6_HUMAN | D4HNR6
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  IL2RG_HUMAN | P31785
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  IL4_HUMAN | P05112
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IL2RG_HUMAN | P317851ill 1ilm 1iln 1ite 2b5i 2erj 3bpl 3qaz 4gs7 5m5e
        IL4_HUMAN | P051121bbn 1bcn 1cyl 1hij 1hik 1hzi 1iar 1ill 1ite 1iti 1itl 1itm 1rcb 2b8u 2b8x 2b8y 2b8z 2b90 2b91 2cyk 2d48 2int 3bpl 3bpn 4ydy 5fhx

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3QB7)