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3QB7
Biol. Unit 2
Info
Asym.Unit (234 KB)
Biol.Unit 1 (114 KB)
Biol.Unit 2 (116 KB)
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(1)
Title
:
INTERLEUKIN-4 MUTANT RGA BOUND TO CYTOKINE RECEPTOR COMMON GAMMA
Authors
:
D. L. Bates, I. S. Junttila, R. J. Creusot, I. Moraga, P. Lupardus, C. G. F W. E. Paul, K. C. Garcia
Date
:
12 Jan 11 (Deposition) - 25 Apr 12 (Release) - 12 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.25
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Cytokine Signaling, Il-4Ralpha, Cytokine-Cytokine Receptor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. S. Junttila, R. J. Creusot, I. Moraga, D. L. Bates, M. T. Wong, M. N. Alonso, M. M. Suhoski, P. Lupardus, M. Meier-Schellersheim, E. G. Engleman, P. J. Utz, C. G. Fathman, W. E. Paul, K. C. Garcia
Redirecting Cell-Type Specific Cytokine Responses With Engineered Interleukin-4 Superkines.
Nat. Chem. Biol. V. 8 990 2012
[
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
SO4
1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA B:70 , GLN B:71 , PHE C:43 , TYR C:47 , ASN C:49 , GLN C:94 , NAG C:234
BINDING SITE FOR RESIDUE NAG C 233
2
AC2
SOFTWARE
ALA B:68 , NAG C:233
BINDING SITE FOR RESIDUE NAG C 234
3
AC3
SOFTWARE
ASN C:62
BINDING SITE FOR RESIDUE NAG C 300
4
AC7
SOFTWARE
GLN B:78 , ARG B:81 , PHE B:82 , ARG B:85 , ARG C:200
BINDING SITE FOR RESIDUE SO4 B 130
[
close Site info
]
SAPs(SNPs)/Variants
(31, 31)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_020392 (C3R, chain B, )
02: VAR_002669 (C40G, chain C, )
03: VAR_002670 (E46G, chain C, )
04: VAR_002671 (E46K, chain C, )
05: VAR_002672 (N62K, chain C, )
06: VAR_002673 (Y67C, chain C, )
07: VAR_002674 (Y83C, chain C, )
08: VAR_020611 (E87K, chain C, )
09: VAR_002675 (G92D, chain C, )
10: VAR_002676 (C93F, chain C, )
11: VAR_002677 (C93R, chain C, )
12: VAR_002678 (H101P, chain C, )
13: VAR_002679 (Y103N, chain C, )
14: VAR_002680 (Q122P, chain C, )
15: VAR_002681 (I131N, chain C, )
16: VAR_002682 (A134V, chain C, )
17: VAR_002683 (L140H, chain C, )
18: VAR_002684 (L150P, chain C, )
19: VAR_002685 (L150Q, chain C, )
20: VAR_002686 (C160R, chain C, )
21: VAR_002687 (L161S, chain C, )
22: VAR_002688 (R200C, chain C, )
23: VAR_002689 (R202W, chain C, )
24: VAR_002690 (R204C, chain C, )
25: VAR_002691 (R204H, chain C, )
26: VAR_002692 (F205C, chain C, )
27: VAR_002693 (L208P, chain C, )
28: VAR_002694 (C209Y, chain C, )
29: VAR_002695 (G210R, chain C, )
30: VAR_002697 (W218C, chain C, )
31: VAR_002698 (S219I, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_020392
C
27
R
IL4_HUMAN
Polymorphism
4986964
B
C
3
R
02
UniProt
VAR_002669
C
62
G
IL2RG_HUMAN
Disease (XSCID)
---
C
C
40
G
03
UniProt
VAR_002670
E
68
G
IL2RG_HUMAN
Disease (XSCID)
---
C
E
46
G
04
UniProt
VAR_002671
E
68
K
IL2RG_HUMAN
Disease (XSCID)
---
C
E
46
K
05
UniProt
VAR_002672
N
84
K
IL2RG_HUMAN
Disease (XSCID)
---
C
N
62
K
06
UniProt
VAR_002673
Y
89
C
IL2RG_HUMAN
Disease (XSCID)
---
C
Y
67
C
07
UniProt
VAR_002674
Y
105
C
IL2RG_HUMAN
Disease (XSCID)
---
C
Y
83
C
08
UniProt
VAR_020611
E
109
K
IL2RG_HUMAN
Polymorphism
17875899
C
E
87
K
09
UniProt
VAR_002675
G
114
D
IL2RG_HUMAN
Disease (XSCID)
---
C
G
92
D
10
UniProt
VAR_002676
C
115
F
IL2RG_HUMAN
Disease (XSCID)
---
C
C
93
F
11
UniProt
VAR_002677
C
115
R
IL2RG_HUMAN
Disease (XSCID)
---
C
C
93
R
12
UniProt
VAR_002678
H
123
P
IL2RG_HUMAN
Disease (XSCID)
---
C
H
101
P
13
UniProt
VAR_002679
Y
125
N
IL2RG_HUMAN
Disease (XSCID)
---
C
Y
103
N
14
UniProt
VAR_002680
Q
144
P
IL2RG_HUMAN
Disease (XSCID)
---
C
Q
122
P
15
UniProt
VAR_002681
I
153
N
IL2RG_HUMAN
Disease (XSCID)
---
C
I
131
N
16
UniProt
VAR_002682
A
156
V
IL2RG_HUMAN
Disease (XSCID)
---
C
A
134
V
17
UniProt
VAR_002683
L
162
H
IL2RG_HUMAN
Disease (XSCID)
---
C
L
140
H
18
UniProt
VAR_002684
L
172
P
IL2RG_HUMAN
Disease (XSCID)
---
C
L
150
P
19
UniProt
VAR_002685
L
172
Q
IL2RG_HUMAN
Disease (XSCID)
---
C
L
150
Q
20
UniProt
VAR_002686
C
182
R
IL2RG_HUMAN
Disease (XSCID)
---
C
C
160
R
21
UniProt
VAR_002687
L
183
S
IL2RG_HUMAN
Disease (XSCID)
---
C
L
161
S
22
UniProt
VAR_002688
R
222
C
IL2RG_HUMAN
Disease (XCID)
---
C
R
200
C
23
UniProt
VAR_002689
R
224
W
IL2RG_HUMAN
Disease (XSCID)
---
C
R
202
W
24
UniProt
VAR_002690
R
226
C
IL2RG_HUMAN
Disease (XSCID)
---
C
R
204
C
25
UniProt
VAR_002691
R
226
H
IL2RG_HUMAN
Disease (XSCID)
---
C
R
204
H
26
UniProt
VAR_002692
F
227
C
IL2RG_HUMAN
Disease (XSCID)
---
C
F
205
C
27
UniProt
VAR_002693
L
230
P
IL2RG_HUMAN
Disease (XSCID)
---
C
L
208
P
28
UniProt
VAR_002694
C
231
Y
IL2RG_HUMAN
Disease (XSCID)
---
C
C
209
Y
29
UniProt
VAR_002695
G
232
R
IL2RG_HUMAN
Disease (XSCID)
---
C
G
210
R
30
UniProt
VAR_002697
W
240
C
IL2RG_HUMAN
Disease (XSCID)
---
C
W
218
C
31
UniProt
VAR_002698
S
241
I
IL2RG_HUMAN
Disease (XSCID)
---
C
S
219
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: INTERLEUKIN_4_13 (B:7-32)
2: FN3 (C:134-226)
3: HEMATOPO_REC_S_F1 (C:191-224)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INTERLEUKIN_4_13
PS00838
Interleukins -4 and -13 signature.
IL4_HUMAN
31-56
1
-
B:7-32
2
FN3
PS50853
Fibronectin type-III domain profile.
IL2RG_HUMAN
156-253
1
C:134-226
-
3
HEMATOPO_REC_S_F1
PS01355
Short hematopoietin receptor family 1 signature.
IL2RG_HUMAN
213-246
1
C:191-224
-
[
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]
Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
Info
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (234 KB)
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