Chain A from PDB Type:PROTEIN Length:365
aligned with RAPH_BACSU | Q59HN8 from UniProtKB/Swiss-Prot Length:376
Alignment length:373
13 23 33 43 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223 233 243 253 263 273 283 293 303 313 323 333 343 353 363 373
RAPH_BACSU 4 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY 376
SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..--------.hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (2) -----------------------------------------------------------------------------------------------TPR PDB: A:99-132 UniProt: 99-132---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
PROSITE (3) -----------------------------------------------------------------------------------------------TPR_REGION PDB: A:99-253 UniProt: 99-253 --------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
PROSITE (1) ---------------------------------------------------------------------------------------------------------------------------------------TPR PDB: A:139-172 -------TPR PDB: A:180-213 ------TPR PDB: A:220-253 --------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3q15 A 4 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLE--------PTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY 376
13 23 33 43 53 63 | - | 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223 233 243 253 263 273 283 293 303 313 323 333 343 353 363 373
68 77
Chain B from PDB Type:PROTEIN Length:332
aligned with RAPH_BACSU | Q59HN8 from UniProtKB/Swiss-Prot Length:376
Alignment length:373
13 23 33 43 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223 233 243 253 263 273 283 293 303 313 323 333 343 353 363 373
RAPH_BACSU 4 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY 376
SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains (1) -----------------------------------------------------------------------------------------------TPR_2-3q15B03 B:99-131 ----------------------------------------TPR_12-3q15B01 B:172-252 ---------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
Pfam domains (2) -----------------------------------------------------------------------------------------------TPR_2-3q15B04 B:99-131 ----------------------------------------TPR_12-3q15B02 B:172-252 ---------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
Sec.struct. author ..hhhhhhhhhhhhhhhhh....-------------------hhhhhhhhhhhhhhhhhhhhh-------------------.hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....---.hhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (2) -----------------------------------------------------------------------------------------------TPR PDB: B:99-132 UniProt: 99-132---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
PROSITE (3) -----------------------------------------------------------------------------------------------TPR_REGION PDB: B:99-253 UniProt: 99-253 --------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
PROSITE (1) ---------------------------------------------------------------------------------------------------------------------------------------TPR PDB: B:139-172 -------TPR PDB: B:180-213 ------TPR PDB: B:220-253 --------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3q15 B 4 AIPSSRVGVKINEWYKMIRQFSV-------------------DQDLLIYYSLMCFRHQLMLDY-------------------IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA---KFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY 376
13 23 | - - | 53 63 | - - | 93 103 113 123 133 143 153 163 173 183 193 203 213 223 233 243 253 263 273 283 | - | 303 313 323 333 343 353 363 373
26 46 66 86 291 295
Chain C from PDB Type:PROTEIN Length:116
aligned with SP0F_BACSU | P06628 from UniProtKB/Swiss-Prot Length:124
Alignment length:116
13 23 33 43 53 63 73 83 93 103 113
SP0F_BACSU 4 EKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119
SCOP domains d3q15c_ C: Sporulation response regulator Spo0F SCOP domains
CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeee..hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhh..eeeee......hhhhhhhhhhhhh....eeeee...hhhhhhhhhhh....eee...hhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -RESPONSE_REGULATORY PDB: C:5-119 UniProt: 5-119 PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
3q15 C 4 EKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119
13 23 33 43 53 63 73 83 93 103 113
Chain D from PDB Type:PROTEIN Length:100
aligned with SP0F_BACSU | P06628 from UniProtKB/Swiss-Prot Length:124
Alignment length:116
13 23 33 43 53 63 73 83 93 103 113
SP0F_BACSU 4 EKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119
SCOP domains d3q15d_ D: Sporulation response regulator Spo0F SCOP domains
CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains (1) --Response_reg-3q15D01 D:6-116 --- Pfam domains (1)
Pfam domains (2) --Response_reg-3q15D02 D:6-116 --- Pfam domains (2)
Sec.struct. author .eeeee..hhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhh..eeeee......hhhhhhhhhhhhh...eeeeee----------------..eee...hhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -RESPONSE_REGULATORY PDB: D:5-119 UniProt: 5-119 PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
3q15 D 4 EKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMT----------------LTHFAKPFDIDEIRDAVKKYL 119
13 23 33 43 53 63 73 |- - | 103 113
82 99
Legend: |
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(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |