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3Q15
Biol. Unit 1
Info
Asym.Unit (343 KB)
Biol.Unit 1 (342 KB)
Biol.Unit 2 (310 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RAPH COMPLEXED WITH SPO0F
Authors
:
V. Parashar, M. B. Neiditch
Date
:
16 Dec 10 (Deposition) - 23 Feb 11 (Release) - 20 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.19
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (2x)
Biol. Unit 2: B,D (2x)
Keywords
:
Tetratricopeptide Repeat, 3-Helix Bundle, Phosphorelay Signal Transduction, Phosphatase, Response Regulator Receiver, Hydrolase- Kinase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
V. Parashar, N. Mirouze, D. A. Dubnau, M. B. Neiditch
Structural Basis Of Response Regulator Dephosphorylation By Rap Phosphatases.
Plos Biol. V. 9 E1000 2011
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
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Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC5 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:153 , GLN A:154 , THR A:155 , PHE A:193 , LEU A:368 , GLU A:371 , HOH A:453 , HOH A:466
BINDING SITE FOR RESIDUE GOL A 377
2
AC2
SOFTWARE
LYS A:144 , ARG A:178
BINDING SITE FOR RESIDUE SO4 A 378
3
AC5
SOFTWARE
ASP C:11 , ASP C:54 , LYS C:56
BINDING SITE FOR RESIDUE MG C 125
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: RESPONSE_REGULATORY (C:5-119)
2: TPR (A:99-132,A:139-172,A:180-213,A:220...)
3: TPR_REGION (A:99-253)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RESPONSE_REGULATORY
PS50110
Response regulatory domain profile.
SP0F_BACSU
5-119
2
C:5-119
-
2
TPR
PS50005
TPR repeat profile.
RAPH_BACSU
99-132
139-172
180-213
220-253
8
A:99-132
-
A:139-172
-
A:180-213
-
A:220-253
-
3
TPR_REGION
PS50293
TPR repeat region circular profile.
RAPH_BACSU
99-253
2
A:99-253
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3q15c_ (C:)
1b: SCOP_d3q15d_ (D:)
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)
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)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
CheY-like
(258)
Family
:
CheY-related
(166)
Protein domain
:
Sporulation response regulator Spo0F
(12)
Bacillus subtilis [TaxId: 1423]
(12)
1a
d3q15c_
C:
1b
d3q15d_
D:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Response_reg_3q15D01 (D:6-116)
1b: PFAM_Response_reg_3q15D02 (D:6-116)
2a: PFAM_TPR_12_3q15B01 (B:172-252)
2b: PFAM_TPR_12_3q15B02 (B:172-252)
3a: PFAM_TPR_2_3q15B03 (B:99-131)
3b: PFAM_TPR_2_3q15B04 (B:99-131)
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Clans
(
)
(
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Families
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)
(
)
Organisms
(
)
(
)
Clan
:
CheY
(97)
Family
:
Response_reg
(94)
Bacillus subtilis
(8)
1a
Response_reg-3q15D01
D:6-116
1b
Response_reg-3q15D02
D:6-116
Clan
:
TPR
(230)
Family
:
TPR_12
(1)
Bacillus subtilis
(1)
2a
TPR_12-3q15B01
B:172-252
2b
TPR_12-3q15B02
B:172-252
Family
:
TPR_2
(8)
Bacillus subtilis
(2)
3a
TPR_2-3q15B03
B:99-131
3b
TPR_2-3q15B04
B:99-131
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Show PDB file:
Asym.Unit (343 KB)
Header - Asym.Unit
Biol.Unit 1 (342 KB)
Header - Biol.Unit 1
Biol.Unit 2 (310 KB)
Header - Biol.Unit 2
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