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(-) Description

Title :  CRYSTAL STRUCTURE OF E.COLI OMPF PORIN IN LIPIDIC CUBIC PHASE: SPACE GROUP P1
 
Authors :  R. G. Efremov, L. A. Sazanov
Date :  23 Nov 10  (Deposition) - 07 Mar 12  (Release) - 20 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Beta Barrel, Membrane Protein, Solute Transport, Pore (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. G. Efremov, L. A. Sazanov
Structure Of Escherichia Coli Ompf Porin From Lipidic Mesophase.
J. Struct. Biol. V. 178 311 2012
PubMed-ID: 22484237  |  Reference-DOI: 10.1016/J.JSB.2012.03.005

(-) Compounds

Molecule 1 - OMPF PROTEIN
    Chains: A, B, C, D, E, F
    Fragment: UNP RESIDUES 23-362
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 511693
    Strain: BL21
    Synonym: OUTER MEMBRANE PROTEIN F

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 114)

Asymmetric Unit (3, 114)
No.NameCountTypeFull Name
1K20Ligand/IonPOTASSIUM ION
2OLC88Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
3SCN6Ligand/IonTHIOCYANATE ION
Biological Unit 1 (2, 65)
No.NameCountTypeFull Name
1K-1Ligand/IonPOTASSIUM ION
2OLC63Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
3SCN2Ligand/IonTHIOCYANATE ION
Biological Unit 2 (2, 29)
No.NameCountTypeFull Name
1K-1Ligand/IonPOTASSIUM ION
2OLC25Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
3SCN4Ligand/IonTHIOCYANATE ION

(-) Sites  (105, 105)

Asymmetric Unit (105, 105)
No.NameEvidenceResiduesDescription
001AC1SOFTWAREOLC A:361 , PHE E:145 , LEU E:147BINDING SITE FOR RESIDUE OLC A 341
002AC2SOFTWARETYR A:301BINDING SITE FOR RESIDUE OLC A 342
003AC3SOFTWAREALA A:261 , OLC A:344BINDING SITE FOR RESIDUE OLC A 343
004AC4SOFTWAREOLC A:343 , TYR E:139 , VAL E:155 , TYR E:157BINDING SITE FOR RESIDUE OLC A 344
005AC5SOFTWAREOLC A:362 , TYR E:157 , OLC E:341BINDING SITE FOR RESIDUE OLC A 345
006AC6SOFTWARELEU A:218 , TYR A:220 , OLC A:348 , OLC A:362 , HOH A:446 , PHE D:23BINDING SITE FOR RESIDUE OLC A 346
007AC7SOFTWARETHR A:216 , ALA A:229 , OLC D:349BINDING SITE FOR RESIDUE OLC A 347
008AC8SOFTWARETYR A:275 , OLC A:346 , OLC D:349 , ASN E:52 , ASP E:54 , TYR E:90 , VAL E:93BINDING SITE FOR RESIDUE OLC A 348
009AC9SOFTWARELEU A:147 , VAL A:148 , TYR A:180 , TYR A:182 , ILE A:187 , THR A:216 , HOH A:425 , HOH A:844 , HOH A:1357 , PHE D:265 , ILE D:273 , PHE D:295 , ILE D:315 , GLN D:317 , HOH D:788BINDING SITE FOR RESIDUE OLC A 349
010BC1SOFTWAREGLY A:176 , SER A:177 , ILE A:178 , GLY A:189 , ALA A:190BINDING SITE FOR RESIDUE OLC A 350
011BC2SOFTWAREOLC A:352 , TYR D:263BINDING SITE FOR RESIDUE OLC A 351
012BC3SOFTWAREOLC A:351BINDING SITE FOR RESIDUE OLC A 352
013BC4SOFTWAREPHE A:145 , LEU A:147BINDING SITE FOR RESIDUE OLC A 353
014BC5SOFTWAREPHE E:295BINDING SITE FOR RESIDUE OLC A 354
015BC6SOFTWARETYR A:157 , OLC A:356 , OLC C:357BINDING SITE FOR RESIDUE OLC A 355
016BC7SOFTWARETYR A:98 , TYR A:157 , GLY A:159 , LYS A:160 , ASP A:172 , OLC A:355 , HOH A:426 , PHE C:23 , ALA C:299 , THR C:300 , TYR C:301 , THR C:309 , VAL C:334 , LEU E:218BINDING SITE FOR RESIDUE OLC A 356
017BC8SOFTWAREPHE A:295 , PHE E:145BINDING SITE FOR RESIDUE OLC A 357
018BC9SOFTWAREPHE A:23 , TYR A:313 , ASP A:330 , OLC A:361 , HOH A:1573 , HOH A:1574BINDING SITE FOR RESIDUE OLC A 358
019CC1SOFTWAREHIS A:21 , PHE A:23 , ALA A:299 , THR A:309 , VAL A:334 , GLY A:335 , TYR B:157 , GLY B:159 , ASP B:172BINDING SITE FOR RESIDUE OLC A 359
020CC2SOFTWAREPHE A:267 , OLC A:365BINDING SITE FOR RESIDUE OLC A 360
021CC3SOFTWAREPRO A:271 , VAL A:297 , GLY A:298 , TYR A:313 , ASP A:330 , OLC A:341 , OLC A:358 , OLC A:365 , HOH A:397 , HOH A:1575BINDING SITE FOR RESIDUE OLC A 361
022CC4SOFTWAREOLC A:345 , OLC A:346 , PHE D:23 , OLC D:349 , PHE E:96 , OLC E:341BINDING SITE FOR RESIDUE OLC A 362
023CC5SOFTWARETYR A:139BINDING SITE FOR RESIDUE OLC A 363
024CC6SOFTWAREOLC A:360 , OLC A:361BINDING SITE FOR RESIDUE OLC A 365
025CC7SOFTWAREASN A:316 , ILE A:318 , SER A:328 , HOH A:397 , HOH A:408 , HOH A:424BINDING SITE FOR RESIDUE K A 366
026CC8SOFTWAREGLU A:201 , GLN A:203 , GLY A:206 , HOH A:860 , HOH A:1087BINDING SITE FOR RESIDUE K A 367
027CC9SOFTWAREASN A:207 , ASN A:236 , ASN A:252 , HOH A:451 , HOH A:649BINDING SITE FOR RESIDUE K A 368
028DC1SOFTWAREARG A:42 , GLU A:62BINDING SITE FOR RESIDUE SCN A 369
029DC2SOFTWAREPHE B:23BINDING SITE FOR RESIDUE OLC B 342
030DC3SOFTWAREOLC B:352 , PHE D:145BINDING SITE FOR RESIDUE OLC B 343
031DC4SOFTWAREOLC B:345 , OLC B:346BINDING SITE FOR RESIDUE OLC B 344
032DC5SOFTWARETYR B:220 , ASN B:223 , ILE B:273 , OLC B:344 , PHE F:23 , VAL F:334BINDING SITE FOR RESIDUE OLC B 345
033DC6SOFTWARELEU B:218 , OLC B:344 , HOH B:541 , HOH B:1538 , TYR D:98 , TYR D:157 , LYS D:160 , ASP D:172 , HIS F:21 , PHE F:23 , LEU F:269 , ALA F:299 , THR F:300 , TYR F:301 , THR F:309 , VAL F:334 , ILE F:336BINDING SITE FOR RESIDUE OLC B 346
034DC7SOFTWAREGLY B:189 , ALA B:190 , TRP B:214BINDING SITE FOR RESIDUE OLC B 347
035DC8SOFTWARETYR B:191 , OLC B:350BINDING SITE FOR RESIDUE OLC B 348
036DC9SOFTWARETYR B:180 , TYR B:182 , THR B:216 , OLC B:348 , PHE F:265 , ILE F:273 , PHE F:295 , VAL F:297 , ILE F:315 , GLN F:317 , HOH F:677BINDING SITE FOR RESIDUE OLC B 350
037EC1SOFTWARETYR B:231 , GLN B:255 , VAL B:257 , LEU B:259 , HOH B:1192 , PHE F:267 , TYR F:301 , HOH F:354BINDING SITE FOR RESIDUE OLC B 351
038EC2SOFTWAREPHE B:295 , GLN B:317 , OLC B:343 , HOH B:1332 , ASP D:92 , TYR D:139 , PHE D:145BINDING SITE FOR RESIDUE OLC B 352
039EC3SOFTWAREALA B:261 , GLN B:262 , TYR B:263 , ILE B:273BINDING SITE FOR RESIDUE OLC B 353
040EC4SOFTWAREASN B:316 , ILE B:318 , SER B:328 , HOH B:1554 , HOH B:1555BINDING SITE FOR RESIDUE K B 355
041EC5SOFTWAREGLU B:201 , GLN B:203 , GLY B:206 , HOH B:664 , HOH B:1340 , HOH B:1582BINDING SITE FOR RESIDUE K B 356
042EC6SOFTWAREASN B:207 , ASN B:236 , ASN B:252 , HOH B:867 , HOH B:1128 , HOH B:1587BINDING SITE FOR RESIDUE K B 357
043EC7SOFTWAREARG B:42 , GLU B:62 , HOH B:1288BINDING SITE FOR RESIDUE SCN B 358
044EC8SOFTWARETYR E:191BINDING SITE FOR RESIDUE OLC C 344
045EC9SOFTWAREALA C:228 , VAL C:260BINDING SITE FOR RESIDUE OLC C 345
046FC1SOFTWARETYR C:275BINDING SITE FOR RESIDUE OLC C 346
047FC2SOFTWAREGLN C:317 , OLC C:358 , HOH E:1300BINDING SITE FOR RESIDUE OLC C 347
048FC3SOFTWARETYR C:275 , OLC C:349BINDING SITE FOR RESIDUE OLC C 348
049FC4SOFTWAREILE C:187 , THR C:216 , LEU C:218 , OLC C:348BINDING SITE FOR RESIDUE OLC C 349
050FC5SOFTWARETYR C:180BINDING SITE FOR RESIDUE OLC C 350
051FC6SOFTWAREOLC C:363BINDING SITE FOR RESIDUE OLC C 351
052FC7SOFTWARETYR C:191 , OLC C:363BINDING SITE FOR RESIDUE OLC C 352
053FC8SOFTWAREPHE C:145 , OLC C:363BINDING SITE FOR RESIDUE OLC C 353
054FC9SOFTWARETYR F:275 , OLC F:344BINDING SITE FOR RESIDUE OLC C 355
055GC1SOFTWARETYR C:157BINDING SITE FOR RESIDUE OLC C 356
056GC2SOFTWAREOLC A:355 , PHE C:23 , TYR E:220BINDING SITE FOR RESIDUE OLC C 357
057GC3SOFTWAREPHE C:295 , ILE C:315 , GLN C:317 , OLC C:347 , LEU E:147 , VAL E:148 , LEU E:151 , TYR E:182 , ILE E:187 , VAL E:188 , GLY E:189 , HOH E:409 , HOH E:1300BINDING SITE FOR RESIDUE OLC C 358
058GC4SOFTWAREHIS B:21 , PHE B:23 , ALA B:299 , THR B:309 , VAL B:334 , TYR C:157 , GLY C:159 , ASP C:172BINDING SITE FOR RESIDUE OLC C 359
059GC5SOFTWAREPHE C:267 , TYR C:301 , K C:367 , HOH C:905 , TYR E:231 , HOH E:945 , HOH E:1388BINDING SITE FOR RESIDUE OLC C 360
060GC6SOFTWARETYR C:263 , PHE C:265 , ASP C:266 , PHE C:267 , HOH C:1151 , PHE E:153 , GLY E:176 , SER E:177 , GLY E:189 , ALA E:190 , TRP E:214BINDING SITE FOR RESIDUE OLC C 362
061GC7SOFTWAREGLY C:176 , SER C:177 , TRP C:214 , ARG C:235 , OLC C:351 , OLC C:352 , OLC C:353 , HOH C:546 , HOH C:655BINDING SITE FOR RESIDUE OLC C 363
062GC8SOFTWAREASN C:52 , GLY C:94 , HOH C:1419BINDING SITE FOR RESIDUE OLC C 364
063GC9SOFTWAREASN C:316 , ILE C:318 , SER C:328 , HOH C:390 , HOH C:1557 , HOH C:1576BINDING SITE FOR RESIDUE K C 365
064HC1SOFTWAREGLU C:201 , GLN C:203 , GLY C:206 , HOH C:1032 , HOH C:1061 , HOH C:1333BINDING SITE FOR RESIDUE K C 366
065HC2SOFTWAREPHE C:267 , TYR C:301 , TYR C:302 , PHE C:303 , OLC C:360 , HOH C:862 , HOH C:905BINDING SITE FOR RESIDUE K C 367
066HC3SOFTWAREASN C:207 , ASN C:236 , ASN C:252 , HOH C:1030 , HOH C:1093 , HOH C:1569BINDING SITE FOR RESIDUE K C 368
067HC4SOFTWAREVAL D:174 , TYR D:191BINDING SITE FOR RESIDUE OLC D 341
068HC5SOFTWAREGLY D:176 , SER D:177 , ILE D:178 , GLY D:189 , ALA D:190 , TRP D:214 , OLC D:345 , HOH D:497BINDING SITE FOR RESIDUE OLC D 342
069HC6SOFTWARELEU D:259 , TYR D:275 , OLC D:346BINDING SITE FOR RESIDUE OLC D 343
070HC7SOFTWAREILE D:273BINDING SITE FOR RESIDUE OLC D 344
071HC8SOFTWARETYR D:191 , GLU D:212 , OLC D:342BINDING SITE FOR RESIDUE OLC D 345
072HC9SOFTWARELYS D:219 , TYR D:220 , ALA D:228 , VAL D:260 , OLC D:343BINDING SITE FOR RESIDUE OLC D 346
073IC1SOFTWAREILE D:187BINDING SITE FOR RESIDUE OLC D 347
074IC2SOFTWARETHR D:216 , LEU D:218BINDING SITE FOR RESIDUE OLC D 348
075IC3SOFTWARETYR A:231 , VAL A:257 , OLC A:347 , OLC A:348 , OLC A:362 , PHE D:267 , TYR D:301 , K D:352 , HOH D:1590BINDING SITE FOR RESIDUE OLC D 349
076IC4SOFTWAREASN D:316 , ILE D:318 , SER D:328 , HOH D:392 , HOH D:1558 , HOH D:1577BINDING SITE FOR RESIDUE K D 350
077IC5SOFTWAREGLU D:201 , GLN D:203 , GLY D:206 , HOH D:1026 , HOH D:1274 , HOH D:1437BINDING SITE FOR RESIDUE K D 351
078IC6SOFTWAREPHE D:267 , TYR D:301 , TYR D:302 , PHE D:303 , OLC D:349 , HOH D:1549BINDING SITE FOR RESIDUE K D 352
079IC7SOFTWAREASN D:207 , ASN D:236 , ASN D:252 , HOH D:747 , HOH D:1014 , HOH D:1244BINDING SITE FOR RESIDUE K D 353
080IC8SOFTWAREARG D:42 , GLU D:62 , HOH D:992BINDING SITE FOR RESIDUE SCN D 354
081IC9SOFTWARELEU A:218 , OLC A:345 , OLC A:362 , HIS D:21 , PHE D:23 , ALA D:299 , THR D:309 , VAL D:334 , ILE D:336 , TYR E:98 , TYR E:157 , GLY E:159 , LYS E:160 , ASP E:172BINDING SITE FOR RESIDUE OLC E 341
082JC1SOFTWAREASN A:52 , TYR A:90 , LEU E:259 , TYR E:275BINDING SITE FOR RESIDUE OLC E 342
083JC2SOFTWARETYR E:313 , ASP E:330 , OLC E:344BINDING SITE FOR RESIDUE OLC E 343
084JC3SOFTWARELYS E:25 , TYR E:313 , ASP E:329 , ASP E:330 , OLC E:343 , HOH E:1461BINDING SITE FOR RESIDUE OLC E 344
085JC4SOFTWAREPHE E:23 , TYR E:313 , VAL E:332BINDING SITE FOR RESIDUE OLC E 345
086JC5SOFTWAREOLC F:347BINDING SITE FOR RESIDUE OLC E 346
087JC6SOFTWAREHIS E:21 , ALA E:299 , THR E:309 , VAL E:334 , OLC E:348 , TYR F:157 , GLY F:159 , ASP F:172 , HOH F:1207BINDING SITE FOR RESIDUE OLC E 347
088JC7SOFTWARETHR E:309 , OLC E:347 , HOH E:1141 , PHE F:96BINDING SITE FOR RESIDUE OLC E 348
089JC8SOFTWAREASN E:316 , ILE E:318 , SER E:328 , HOH E:383 , HOH E:1559BINDING SITE FOR RESIDUE K E 349
090JC9SOFTWAREGLU E:201 , GLN E:203 , GLY E:206 , HOH E:537 , HOH E:1236 , HOH E:1544BINDING SITE FOR RESIDUE K E 350
091KC1SOFTWAREASN E:207 , ASN E:236 , ASN E:252 , HOH E:424 , HOH E:459 , HOH E:1057BINDING SITE FOR RESIDUE K E 351
092KC2SOFTWAREGLY E:15 , ARG E:42 , GLU E:62BINDING SITE FOR RESIDUE SCN E 352
093KC3SOFTWAREASP E:74 , ASP F:164 , THR F:165BINDING SITE FOR RESIDUE SCN E 353
094KC4SOFTWAREVAL F:174 , TYR F:191 , OLC F:342BINDING SITE FOR RESIDUE OLC F 341
095KC5SOFTWAREGLY F:176 , SER F:177 , ILE F:178 , GLY F:189 , ALA F:190 , OLC F:341BINDING SITE FOR RESIDUE OLC F 342
096KC6SOFTWARESER F:179 , TYR F:180 , THR F:216BINDING SITE FOR RESIDUE OLC F 343
097KC7SOFTWAREOLC C:355 , LEU F:218 , LEU F:259BINDING SITE FOR RESIDUE OLC F 344
098KC8SOFTWARELYS F:219 , TYR F:220 , VAL F:260BINDING SITE FOR RESIDUE OLC F 345
099KC9SOFTWAREALA F:261 , GLN F:262BINDING SITE FOR RESIDUE OLC F 346
100LC1SOFTWAREOLC E:346 , TYR F:157BINDING SITE FOR RESIDUE OLC F 347
101LC2SOFTWAREASN F:52 , TYR F:90 , GLY F:94BINDING SITE FOR RESIDUE OLC F 348
102LC3SOFTWAREASN F:316 , ILE F:318 , SER F:328 , HOH F:376 , HOH F:1561BINDING SITE FOR RESIDUE K F 349
103LC4SOFTWAREGLU F:201 , GLN F:203 , GLY F:206 , HOH F:1017 , HOH F:1584 , HOH F:1585BINDING SITE FOR RESIDUE K F 350
104LC5SOFTWAREASN F:207 , ASN F:236 , ASN F:252 , HOH F:469 , HOH F:1024 , HOH F:1588BINDING SITE FOR RESIDUE K F 351
105LC6SOFTWARETYR F:14 , ARG F:42 , GLU F:62 , HOH F:817BINDING SITE FOR RESIDUE SCN F 352

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3POX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3POX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3POX)

(-) PROSITE Motifs  (1, 6)

Asymmetric Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GRAM_NEG_PORINPS00576 General diffusion Gram-negative porins signature.OMPF_ECOLI317-333
 
 
 
 
 		  6A:295-311
B:295-311
C:295-311
D:295-311
E:295-311
F:295-311
Biological Unit 1 (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GRAM_NEG_PORINPS00576 General diffusion Gram-negative porins signature.OMPF_ECOLI317-333
 
 
 
 
 		  3A:295-311
B:295-311
C:295-311
-
-
-
Biological Unit 2 (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GRAM_NEG_PORINPS00576 General diffusion Gram-negative porins signature.OMPF_ECOLI317-333
 
 
 
 
 		  3-
-
-
D:295-311
E:295-311
F:295-311

(-) Exons   (0, 0)

(no "Exon" information available for 3POX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:340
 aligned with OMPF_ECOLI | P02931 from UniProtKB/Swiss-Prot  Length:362

    Alignment length:340
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362
           OMPF_ECOLI    23 AEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF 362
               SCOP domains d3poxa_ A: Porin                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eeeeeeeeeeeeeee............ee..eeeeeeeeeee....eeeeeeeeeeee.............eeeeeeeeeee...eeeeeeeee..hhhhhh.....................eeeeeeeeee.hhhhh...eeeeeeee......hhhhh...eeeeeeeeee..eeeeeeeeeee.hhhhhh.......eeeeeeeeeeeee..eeeeeeeeeee...eeee....eeee..eeeeeeeeeee.....eeeeeeeeeeeeeee...eeeeeeeeeeeeeeee....eeeeeeeeee..............eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRAM_NEG_PORIN   ----------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pox A   1 AEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF 340
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340


Chain B from PDB  Type:PROTEIN  Length:340
 aligned with OMPF_ECOLI | P02931 from UniProtKB/Swiss-Prot  Length:362

    Alignment length:340
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362
           OMPF_ECOLI    23 AEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF 362
               SCOP domains d3poxb_ B: Porin                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eeeeeeeeeeeeeee............ee..eeeeeeeeeee....eeeeeeeeeeee.............eeeeeeeeeee...eeeeeeeee..hhhhhh.....................eeeeeeeeeee.hhhh...eeeeeeee..............eeeeeeeeee..eeeeeeeeeee.hhhhhh.......eeeeeeeeeeeee..eeeeeeeeeee...eeee....eeee..eeeeeeeeeee.....eeeeeeeeeeeeeee...eeeeeeeeeeeeeeee....eeeeeeeeee..............eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRAM_NEG_PORIN   ----------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pox B   1 AEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF 340
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340


Chain C from PDB  Type:PROTEIN  Length:340
 aligned with OMPF_ECOLI | P02931 from UniProtKB/Swiss-Prot  Length:362

    Alignment length:340
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362
           OMPF_ECOLI    23 AEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF 362
               SCOP domains d3poxc_ C: Porin                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eeeeeeeeeeeeeee............ee..eeeeeeeeeee....eeeeeeeeeeee.............eeeeeeeeeee...eeeeeeeee..hhhhhh.....................eeeeeeeeeehhhhhh...eeeeeeee......hhhhh...eeeeeeeeee..eeeeeeeeeee.hhhhhh.......eeeeeeeeeeeee..eeeeeeeeeee...eee......eee..eeeeeeeeeee.....eeeeeeeeeeeeeee...eeeeeeeeeeeeeeee....eeeeeeeeee..............eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRAM_NEG_PORIN   ----------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pox C   1 AEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF 340
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340


Chain D from PDB  Type:PROTEIN  Length:340
 aligned with OMPF_ECOLI | P02931 from UniProtKB/Swiss-Prot  Length:362

    Alignment length:340
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362
           OMPF_ECOLI    23 AEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF 362
               SCOP domains d3poxd_ D: Porin                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eeeeeeeeeeeeeee............ee..eeeeeeeeeee....eeeeeeeeeeee.............eeeeeeeeeee...eeeeeeeee..hhhhhh.....................eeeeeeeeee.........eeeeeeee......hhhhh...eeeeeeeeee..eeeeeeeeeee.hhhhhh.......eeeeeeeeeeeee..eeeeeeeeeee...eee......eee..eeeeeeeeeee.....eeeeeeeeeeeeeee...eeeeeeeeeeeeeeee....eeeeeeeeee..............eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRAM_NEG_PORIN   ----------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pox D   1 AEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF 340
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340


Chain E from PDB  Type:PROTEIN  Length:340
 aligned with OMPF_ECOLI | P02931 from UniProtKB/Swiss-Prot  Length:362

    Alignment length:340
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362
           OMPF_ECOLI    23 AEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF 362
               SCOP domains d3poxe_ E: Porin                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eeeeeeeeeeeeeee............ee..eeeeeeeeeee....eeeeeeeeeeee.............eeeeeeeeeee...eeeeeeeee..hhhhhh.....................eeeeeeeeeee.hhhh...eeeeeeee..............eeeeeeeeee..eeeeeeeeeee.hhhhhhh......eeeeeeeeeeeee..eeeeeeeeeee...eeee....eeee..eeeeeeeeeee.....eeeeeeeeeeeeeee...eeeeeeeeeeeeeeee....eeeeeeeeee..............eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRAM_NEG_PORIN   ----------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pox E   1 AEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF 340
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340


Chain F from PDB  Type:PROTEIN  Length:340
 aligned with OMPF_ECOLI | P02931 from UniProtKB/Swiss-Prot  Length:362

    Alignment length:340
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362
           OMPF_ECOLI    23 AEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF 362
               SCOP domains d3poxf_ F: Porin                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eeeeeeeeeeeeeee............ee..eeeeeeeeeee....eeeeeeeeeeee.............eeeeeeeeeee...eeeeeeeee..hhhhhh.....................eeeeeeeeee.........eeeeeeee..............eeeeeeeeee..eeeeeeeeeee.hhhhhh.......eeeeeeeeeeeee..eeeeeeeeeee...eeee....eeee..eeeeeeeeeee.....eeeeeeeeeeeeeee...eeeeeeeeeeeeeeee....eeeeeeeeee..............eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRAM_NEG_PORIN   ----------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pox F   1 AEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF 340
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Membrane and cell surface proteins and peptides (2046)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3POX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3POX)

(-) Gene Ontology  (13, 13)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (OMPF_ECOLI | P02931)
molecular function
    GO:0042912    colicin transmembrane transporter activity    Enables the transfer of a colicin from one side of a membrane to the other. Colicins are a group of antibiotics produced by E. coli and related species that are encoded by a group of naturally occurring plasmids, e.g. Col E1.
    GO:0015238    drug transmembrane transporter activity    Enables the directed movement of a drug from one side of a membrane to the other. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
    GO:0015075    ion transmembrane transporter activity    Enables the transfer of an ion from one side of a membrane to the other.
    GO:0015288    porin activity    Catalysis of the transfer of substances, sized less than 1000 Da, from one side of the membrane to the other. The transmembrane portions of porins consist exclusively of beta-strands which form a beta-barrel. They are found in the outer membranes of Gram-negative bacteria, mitochondria, plastids and possibly acid-fast Gram-positive bacteria.
biological process
    GO:0043213    bacteriocin transport    The directed movement of a bacteriocin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Bacteriocins are a group of antibiotics produced by bacteria and are encoded by a group of naturally occurring plasmids, e.g. Col E1. Bacteriocins are toxic to bacteria closely related to the bacteriocin producing strain.
    GO:0006855    drug transmembrane transport    The process in which a drug is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
    GO:0034220    ion transmembrane transport    A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0046930    pore complex    Any small opening in a membrane that allows the passage of gases and/or liquids.

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  3pox
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    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OMPF_ECOLI | P02931: 1bt9 1gfm 1gfn 1gfo 1gfp 1gfq 1hxt 1hxu 1hxx 1mpf 1opf 2omf 2zfg 2zld 3fyx 3hw9 3hwb 3k19 3k1b 3o0e 3poq 3pou 4d5u 4gcp 4gcq 4gcs 4jfb 4lse 4lsf 4lsh 4lsi

(-) Related Entries Specified in the PDB File

3poq 3pou