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(-) Description

Title :  Q83S VARIANT OF S. ENTERICA RMLA WITH DATP
 
Authors :  A. Chang, R. Moretti, C. A. Bingman, J. S. Thorson, G. N. Phillips Jr. , C Eukaryotic Structural Genomics (Cesg)
Date :  11 Nov 10  (Deposition) - 12 Jan 11  (Release) - 27 Apr 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D,I,J,K,L
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  I,J,K,L  (1x)
Biol. Unit 3:  A,B  (1x)
Biol. Unit 4:  C,D  (1x)
Biol. Unit 5:  I,J  (1x)
Biol. Unit 6:  K,L  (1x)
Keywords :  Nucleotidylyltransferase, Directed Evolution, Structural Genomics, Psi-2, Protein Structure Initiative, Center For Eukaryotic Structural Genomics, Cesg, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Moretti, A. Chang, P. Peltier-Pain, C. A. Bingman, G. N. Phillips, J. S. Thorson
Expanding The Nucleotide And Sugar 1-Phosphate Promiscuity Of Nucleotidyltransferase Rmla Via Directed Evolution.
J. Biol. Chem. V. 286 13235 2011
PubMed-ID: 21317292  |  Reference-DOI: 10.1074/JBC.M110.206433

(-) Compounds

Molecule 1 - GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE
    Chains: A, B, C, D, I, J, K, L
    EC Number: 2.7.7.24
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: RFBA, RMLA, STM2095
    Mutation: YES
    Organism Scientific: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM
    Organism Taxid: 90371
    Synonym: DTDP-GLUCOSE PYROPHOSPHORYLASE, EP, DTDP-GLUCOSE SYNTHASE

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDIJKL
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     IJKL
Biological Unit 3 (1x): AB      
Biological Unit 4 (1x):   CD    
Biological Unit 5 (1x):     IJ  
Biological Unit 6 (1x):       KL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 24)

Asymmetric Unit (2, 24)
No.NameCountTypeFull Name
1DTP8Ligand/Ion2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
2MG16Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1DTP4Ligand/Ion2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1DTP4Ligand/Ion2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1DTP2Ligand/Ion2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1DTP2Ligand/Ion2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 5 (1, 2)
No.NameCountTypeFull Name
1DTP2Ligand/Ion2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 6 (1, 2)
No.NameCountTypeFull Name
1DTP2Ligand/Ion2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:9 , ALA A:10 , GLY A:11 , GLY A:12 , SER A:13 , GLY A:14 , THR A:15 , ARG A:16 , LYS A:26 , GLN A:27 , SER A:83 , SER A:85 , PRO A:86 , GLY A:110 , ASP A:111 , MG A:501 , MG A:502BINDING SITE FOR RESIDUE DTP A 500
02AC2SOFTWAREARG A:16 , ASP A:111 , ASP A:226 , DTP A:500BINDING SITE FOR RESIDUE MG A 501
03AC3SOFTWAREDTP A:500BINDING SITE FOR RESIDUE MG A 502
04AC4SOFTWARELEU B:9 , GLY B:11 , GLY B:12 , SER B:13 , GLY B:14 , THR B:15 , ARG B:16 , LYS B:26 , GLN B:27 , SER B:83 , SER B:85 , PRO B:86 , GLY B:110 , ASP B:111 , MG B:501 , MG B:502BINDING SITE FOR RESIDUE DTP B 500
05AC5SOFTWAREARG B:16 , ASP B:111 , ASP B:226 , DTP B:500BINDING SITE FOR RESIDUE MG B 501
06AC6SOFTWAREDTP B:500BINDING SITE FOR RESIDUE MG B 502
07AC7SOFTWARELEU C:9 , GLY C:11 , GLY C:12 , SER C:13 , GLY C:14 , THR C:15 , ARG C:16 , LYS C:26 , GLN C:27 , SER C:83 , SER C:85 , PRO C:86 , GLY C:110 , ASP C:111 , MG C:501 , MG C:502 , LYS D:278BINDING SITE FOR RESIDUE DTP C 500
08AC8SOFTWAREARG C:16 , ASP C:111 , ASP C:226 , DTP C:500BINDING SITE FOR RESIDUE MG C 501
09AC9SOFTWAREDTP C:500BINDING SITE FOR RESIDUE MG C 502
10BC1SOFTWARELEU D:9 , GLY D:11 , GLY D:12 , SER D:13 , GLY D:14 , THR D:15 , ARG D:16 , LYS D:26 , GLN D:27 , SER D:83 , SER D:85 , PRO D:86 , GLY D:110 , ASP D:111 , MG D:501 , MG D:502BINDING SITE FOR RESIDUE DTP D 500
11BC2SOFTWAREASP D:111 , ASP D:226 , DTP D:500BINDING SITE FOR RESIDUE MG D 501
12BC3SOFTWAREDTP D:500BINDING SITE FOR RESIDUE MG D 502
13BC4SOFTWARELEU I:9 , GLY I:11 , GLY I:12 , SER I:13 , GLY I:14 , THR I:15 , ARG I:16 , LYS I:26 , GLN I:27 , SER I:83 , SER I:85 , PRO I:86 , GLY I:110 , ASP I:111 , MG I:501 , MG I:502 , HOH J:313BINDING SITE FOR RESIDUE DTP I 500
14BC5SOFTWAREASP I:111 , ASP I:226 , HOH I:313 , DTP I:500BINDING SITE FOR RESIDUE MG I 501
15BC6SOFTWAREDTP I:500BINDING SITE FOR RESIDUE MG I 502
16BC7SOFTWARELEU J:9 , ALA J:10 , GLY J:11 , GLY J:12 , SER J:13 , GLY J:14 , THR J:15 , ARG J:16 , LYS J:26 , GLN J:27 , SER J:83 , SER J:85 , PRO J:86 , GLY J:110 , ASP J:111 , HOH J:304 , MG J:501 , MG J:502BINDING SITE FOR RESIDUE DTP J 500
17BC8SOFTWAREASP J:111 , ASP J:226 , DTP J:500BINDING SITE FOR RESIDUE MG J 501
18BC9SOFTWAREDTP J:500BINDING SITE FOR RESIDUE MG J 502
19CC1SOFTWAREGLY K:11 , GLY K:12 , SER K:13 , GLY K:14 , THR K:15 , ARG K:16 , LYS K:26 , GLN K:27 , SER K:83 , SER K:85 , PRO K:86 , GLY K:110 , ASP K:111 , MG K:501 , MG K:502BINDING SITE FOR RESIDUE DTP K 500
20CC2SOFTWAREARG K:16 , ASP K:111 , ASP K:226 , DTP K:500BINDING SITE FOR RESIDUE MG K 501
21CC3SOFTWAREDTP K:500BINDING SITE FOR RESIDUE MG K 502
22CC4SOFTWARELEU L:9 , GLY L:11 , GLY L:12 , SER L:13 , GLY L:14 , THR L:15 , ARG L:16 , LYS L:26 , GLN L:27 , SER L:83 , SER L:85 , PRO L:86 , GLY L:110 , ASP L:111 , MG L:501 , MG L:502BINDING SITE FOR RESIDUE DTP L 500
23CC5SOFTWAREARG L:16 , ASP L:111 , ASP L:226 , DTP L:500BINDING SITE FOR RESIDUE MG L 501
24CC6SOFTWAREDTP L:500BINDING SITE FOR RESIDUE MG L 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3PKP)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Tyr A:18 -Pro A:19
2Tyr B:18 -Pro B:19
3Tyr C:18 -Pro C:19
4Tyr D:18 -Pro D:19
5Tyr I:18 -Pro I:19
6Tyr J:18 -Pro J:19
7Tyr K:18 -Pro K:19
8Tyr L:18 -Pro L:19

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3PKP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3PKP)

(-) Exons   (0, 0)

(no "Exon" information available for 3PKP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:290
 aligned with RMLA_SALTY | P26393 from UniProtKB/Swiss-Prot  Length:292

    Alignment length:290
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290
           RMLA_SALTY     1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQKGTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAFRKNFINAQQVIELAGPLSKNDYGKYLLKMVK 290
               SCOP domains d3pkpa_ A: automated matches                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee....hhhhh......hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh...eeeee..eeee..hhhhhhhhhhhh...eeeeeee..hhhh.eeeee.....eeeeee........eeeeeeeee.hhhhhhhhh.........hhhhhhhhhhhh..eeeeee....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhh....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkp A   1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVSPSPDGLAQAFIIGEEFIGHDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQKGTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAFRKNFINAQQVIELAGPLSKNDYGKYLLKMVK 290
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290


Chain B from PDB  Type:PROTEIN  Length:289
 aligned with RMLA_SALTY | P26393 from UniProtKB/Swiss-Prot  Length:292

    Alignment length:289
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281         
           RMLA_SALTY     2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQKGTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAFRKNFINAQQVIELAGPLSKNDYGKYLLKMVK 290
               SCOP domains d3pkpb_ B: automated matches                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....hhhhh......hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh...eeeee..eeee..hhhhhhhhhhhh...eeeeeee..hhhh.eeeee.....eeeeee........eeeeeeeee.hhhhhhhhh.........hhhhhhhhhhhh..eeeeee....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhh....hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkp B   2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVSPSPDGLAQAFIIGEEFIGHDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQKGTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAFRKNFINAQQVIELAGPLSKNDYGKYLLKMVK 290
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281         


Chain C from PDB  Type:PROTEIN  Length:282
 aligned with RMLA_SALTY | P26393 from UniProtKB/Swiss-Prot  Length:292

    Alignment length:288
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282        
           RMLA_SALTY     3 TRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQKGTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAFRKNFINAQQVIELAGPLSKNDYGKYLLKMVK 290
               SCOP domains d3pkpc_ C: automated matches                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee....hhhhh......hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh...eeeee..eeee..hhhhhhhhhhhh...eeeeeee..hhhh.eeeee.....eeeeee........eeeeeeeee.hhhhhhhhh.------..hhhhhhhhhhhh..eeeeee....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhh....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3pkp C   3 TRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVSPSPDGLAQAFIIGEEFIGHDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQKGTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNL------ELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAFRKNFINAQQVIELAGPLSKNDYGKYLLKMVK 290
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       | -    |  202       212       222       232       242       252       262       272       282        
                                                                                                                                                                                                                     190    197                                                                                             


Chain D from PDB  Type:PROTEIN  Length:283
 aligned with RMLA_SALTY | P26393 from UniProtKB/Swiss-Prot  Length:292

    Alignment length:288
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282        
           RMLA_SALTY     3 TRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQKGTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAFRKNFINAQQVIELAGPLSKNDYGKYLLKMVK 290
               SCOP domains d3pkpd_ D: automated matches                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee....hhhhh......hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh...eeeee..eeee..hhhhhhhhhhhh...eeeeeee..hhhh.eeeee.....eeeeee........eeeeeeeee.hhhhhhhhh..-----..hhhhhhhhhhhh..eeeeee....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3pkp D   3 TRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVSPSPDGLAQAFIIGEEFIGHDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQKGTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLK-----ELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAFRKNFINAQQVIELAGPLSKNDYGKYLLKMVK 290
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182        |-    |  202       212       222       232       242       252       262       272       282        
                                                                                                                                                                                                                      191   197                                                                                             


Chain I from PDB  Type:PROTEIN  Length:289
 aligned with RMLA_SALTY | P26393 from UniProtKB/Swiss-Prot  Length:292

    Alignment length:289
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281         
           RMLA_SALTY     2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQKGTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAFRKNFINAQQVIELAGPLSKNDYGKYLLKMVK 290
               SCOP domains d3pkpi_ I: automated matches                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....hhhhh......hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh...eeeee..eeee..hhhhhhhhhhhh...eeeeeee..hhhh.eeeee.....eeeeee........eeeeeeeee.hhhhhhhhh.........hhhhhhhhhhhh..eeeeee....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkp I   2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVSPSPDGLAQAFIIGEEFIGHDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQKGTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAFRKNFINAQQVIELAGPLSKNDYGKYLLKMVK 290
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281         


Chain J from PDB  Type:PROTEIN  Length:289
 aligned with RMLA_SALTY | P26393 from UniProtKB/Swiss-Prot  Length:292

    Alignment length:289
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281         
           RMLA_SALTY     2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQKGTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAFRKNFINAQQVIELAGPLSKNDYGKYLLKMVK 290
               SCOP domains d3pkpj_ J: automated matches                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....hhhhh......hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh...eeeee..eeee..hhhhhhhhhhhh...eeeeeee..hhhh.eeeee.....eeeeee........eeeeeeeee.hhhhhhhhh.........hhhhhhhhhhhh..eeeeee....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkp J   2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVSPSPDGLAQAFIIGEEFIGHDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQKGTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAFRKNFINAQQVIELAGPLSKNDYGKYLLKMVK 290
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281         


Chain K from PDB  Type:PROTEIN  Length:284
 aligned with RMLA_SALTY | P26393 from UniProtKB/Swiss-Prot  Length:292

    Alignment length:289
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281         
           RMLA_SALTY     2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQKGTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAFRKNFINAQQVIELAGPLSKNDYGKYLLKMVK 290
               SCOP domains d3pkpk_ K: automated matches                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....hhhhh......hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh...eeeee..eeee..hhhhhhhhhh-----.eeeeee..hhhh.eeeee.....eeeeee........eeeeeeeee.hhhhhhhhh.........hhhhhhhhhhhh...eeeee....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhh....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkp K   2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVSPSPDGLAQAFIIGEEFIGHDDCALVLGDNIFYGHDLPKLMEAAV-----ATVFAYHVNDPERYGVVEFDQKGTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAFRKNFINAQQVIELAGPLSKNDYGKYLLKMVK 290
                                    11        21        31        41        51        61        71        81        91       101       111       121     |   - |     141       151       161       171       181       191       201       211       221       231       241       251       261       271       281         
                                                                                                                                                       127   133                                                                                                                                                             


Chain L from PDB  Type:PROTEIN  Length:284
 aligned with RMLA_SALTY | P26393 from UniProtKB/Swiss-Prot  Length:292

    Alignment length:289
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281         
           RMLA_SALTY     2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQKGTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAFRKNFINAQQVIELAGPLSKNDYGKYLLKMVK 290
               SCOP domains d3pkpl_ L: automated matches                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---NTP_transferase-3pkpL01 L:5-243                                                                                                                                                                                                                ----------------------------------------------- Pfam domains (1)
           Pfam domains (2) ---NTP_transferase-3pkpL02 L:5-243                                                                                                                                                                                                                ----------------------------------------------- Pfam domains (2)
           Pfam domains (3) ---NTP_transferase-3pkpL03 L:5-243                                                                                                                                                                                                                ----------------------------------------------- Pfam domains (3)
           Pfam domains (4) ---NTP_transferase-3pkpL04 L:5-243                                                                                                                                                                                                                ----------------------------------------------- Pfam domains (4)
           Pfam domains (5) ---NTP_transferase-3pkpL05 L:5-243                                                                                                                                                                                                                ----------------------------------------------- Pfam domains (5)
           Pfam domains (6) ---NTP_transferase-3pkpL06 L:5-243                                                                                                                                                                                                                ----------------------------------------------- Pfam domains (6)
           Pfam domains (7) ---NTP_transferase-3pkpL07 L:5-243                                                                                                                                                                                                                ----------------------------------------------- Pfam domains (7)
           Pfam domains (8) ---NTP_transferase-3pkpL08 L:5-243                                                                                                                                                                                                                ----------------------------------------------- Pfam domains (8)
         Sec.struct. author ...eeeee....hhhhh......hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh...eeeee..eeee..hhhhhhhhhhhh...eeeeeee..hhhh.eeeee.....eeeeee........eeeeeeeee.hhhhhhhhh..-----..hhhhhhhhhhhh..eeeeee....eeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pkp L   2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVSPSPDGLAQAFIIGEEFIGHDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQKGTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLK-----ELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAFRKNFINAQQVIELAGPLSKNDYGKYLLKMVK 290
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191     | 201       211       221       231       241       251       261       271       281         
                                                                                                                                                                                                                       191   197
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3PKP)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Clan: GT-A (172)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,I,J,K,L   (RMLA_SALTY | P26393)
molecular function
    GO:0008879    glucose-1-phosphate thymidylyltransferase activity    Catalysis of the reaction: alpha-D-glucose 1-phosphate + dTTP = diphosphate + dTDP-glucose.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0009243    O antigen biosynthetic process    The chemical reactions and pathways resulting in the formation of the O side chain of a lipopolysaccharide, which determines the antigenic specificity of the organism. It is made up of about 50 repeating units of a branched tetrasaccharide.
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
    GO:0019305    dTDP-rhamnose biosynthetic process    The chemical reactions and pathways resulting in the formation of dTDP-rhamnose, a substance composed of rhamnose in glycosidic linkage with deoxyribosylthymine diphosphate.
    GO:0045226    extracellular polysaccharide biosynthetic process    The chemical reactions and pathways resulting in the formation of polysaccharides used in extracellular structures.
    GO:0009103    lipopolysaccharide biosynthetic process    The chemical reactions and pathways resulting in the formation of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria.

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  3pkp
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  RMLA_SALTY | P26393
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RMLA_SALTY | P26393: 1iim 1iin 1mp3 1mp4 1mp5 3pkq

(-) Related Entries Specified in the PDB File

1iim THYMIDYLYLTRANSFERASE COMPLEXED WITH TTP
1iin THYMIDYLYLTRANSFERASE COMPLEXED WITH UDP-GLUCOSE
1mp3 L89T VARIANT OF S. ENTERICA RMLA
1mp4 W224H VARIANT OF S. ENTERICA RMLA
1mp5 Y177F VARIANT OF S. ENTERICA RMLA
3pkq