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3PKP
Biol. Unit 1
Info
Asym.Unit (787 KB)
Biol.Unit 1 (392 KB)
Biol.Unit 2 (395 KB)
Biol.Unit 3 (201 KB)
Biol.Unit 4 (200 KB)
Biol.Unit 5 (202 KB)
Biol.Unit 6 (201 KB)
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(1)
Title
:
Q83S VARIANT OF S. ENTERICA RMLA WITH DATP
Authors
:
A. Chang, R. Moretti, C. A. Bingman, J. S. Thorson, G. N. Phillips Jr. , C Eukaryotic Structural Genomics (Cesg)
Date
:
11 Nov 10 (Deposition) - 12 Jan 11 (Release) - 27 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,I,J,K,L
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: I,J,K,L (1x)
Biol. Unit 3: A,B (1x)
Biol. Unit 4: C,D (1x)
Biol. Unit 5: I,J (1x)
Biol. Unit 6: K,L (1x)
Keywords
:
Nucleotidylyltransferase, Directed Evolution, Structural Genomics, Psi-2, Protein Structure Initiative, Center For Eukaryotic Structural Genomics, Cesg, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Moretti, A. Chang, P. Peltier-Pain, C. A. Bingman, G. N. Phillips, J. S. Thorson
Expanding The Nucleotide And Sugar 1-Phosphate Promiscuity Of Nucleotidyltransferase Rmla Via Directed Evolution.
J. Biol. Chem. V. 286 13235 2011
[
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE (DTPa)
1b: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE (DTPb)
1c: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE (DTPc)
1d: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE (DTPd)
1e: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE (DTPe)
1f: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE (DTPf)
1g: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE (DTPg)
1h: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE (DTPh)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
2j: MAGNESIUM ION (MGj)
2k: MAGNESIUM ION (MGk)
2l: MAGNESIUM ION (MGl)
2m: MAGNESIUM ION (MGm)
2n: MAGNESIUM ION (MGn)
2o: MAGNESIUM ION (MGo)
2p: MAGNESIUM ION (MGp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DTP
4
Ligand/Ion
2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
2
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:9 , ALA A:10 , GLY A:11 , GLY A:12 , SER A:13 , GLY A:14 , THR A:15 , ARG A:16 , LYS A:26 , GLN A:27 , SER A:83 , SER A:85 , PRO A:86 , GLY A:110 , ASP A:111 , MG A:501 , MG A:502
BINDING SITE FOR RESIDUE DTP A 500
02
AC2
SOFTWARE
ARG A:16 , ASP A:111 , ASP A:226 , DTP A:500
BINDING SITE FOR RESIDUE MG A 501
03
AC3
SOFTWARE
DTP A:500
BINDING SITE FOR RESIDUE MG A 502
04
AC4
SOFTWARE
LEU B:9 , GLY B:11 , GLY B:12 , SER B:13 , GLY B:14 , THR B:15 , ARG B:16 , LYS B:26 , GLN B:27 , SER B:83 , SER B:85 , PRO B:86 , GLY B:110 , ASP B:111 , MG B:501 , MG B:502
BINDING SITE FOR RESIDUE DTP B 500
05
AC5
SOFTWARE
ARG B:16 , ASP B:111 , ASP B:226 , DTP B:500
BINDING SITE FOR RESIDUE MG B 501
06
AC6
SOFTWARE
DTP B:500
BINDING SITE FOR RESIDUE MG B 502
07
AC7
SOFTWARE
LEU C:9 , GLY C:11 , GLY C:12 , SER C:13 , GLY C:14 , THR C:15 , ARG C:16 , LYS C:26 , GLN C:27 , SER C:83 , SER C:85 , PRO C:86 , GLY C:110 , ASP C:111 , MG C:501 , MG C:502 , LYS D:278
BINDING SITE FOR RESIDUE DTP C 500
08
AC8
SOFTWARE
ARG C:16 , ASP C:111 , ASP C:226 , DTP C:500
BINDING SITE FOR RESIDUE MG C 501
09
AC9
SOFTWARE
DTP C:500
BINDING SITE FOR RESIDUE MG C 502
10
BC1
SOFTWARE
LEU D:9 , GLY D:11 , GLY D:12 , SER D:13 , GLY D:14 , THR D:15 , ARG D:16 , LYS D:26 , GLN D:27 , SER D:83 , SER D:85 , PRO D:86 , GLY D:110 , ASP D:111 , MG D:501 , MG D:502
BINDING SITE FOR RESIDUE DTP D 500
11
BC2
SOFTWARE
ASP D:111 , ASP D:226 , DTP D:500
BINDING SITE FOR RESIDUE MG D 501
12
BC3
SOFTWARE
DTP D:500
BINDING SITE FOR RESIDUE MG D 502
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Info
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3pkpa_ (A:)
1b: SCOP_d3pkpk_ (K:)
1c: SCOP_d3pkpl_ (L:)
1d: SCOP_d3pkpb_ (B:)
1e: SCOP_d3pkpc_ (C:)
1f: SCOP_d3pkpd_ (D:)
1g: SCOP_d3pkpi_ (I:)
1h: SCOP_d3pkpj_ (J:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
glucose-1-phosphate thymidylyltransferase
(43)
Protein domain
:
automated matches
(12)
Salmonella typhimurium [TaxId: 90371]
(2)
1a
d3pkpa_
A:
1b
d3pkpk_
K:
1c
d3pkpl_
L:
1d
d3pkpb_
B:
1e
d3pkpc_
C:
1f
d3pkpd_
D:
1g
d3pkpi_
I:
1h
d3pkpj_
J:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_NTP_transferase_3pkpL01 (L:5-243)
1b: PFAM_NTP_transferase_3pkpL02 (L:5-243)
1c: PFAM_NTP_transferase_3pkpL03 (L:5-243)
1d: PFAM_NTP_transferase_3pkpL04 (L:5-243)
1e: PFAM_NTP_transferase_3pkpL05 (L:5-243)
1f: PFAM_NTP_transferase_3pkpL06 (L:5-243)
1g: PFAM_NTP_transferase_3pkpL07 (L:5-243)
1h: PFAM_NTP_transferase_3pkpL08 (L:5-243)
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Clans
(
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(
)
Organisms
(
)
(
)
Clan
:
GT-A
(172)
Family
:
NTP_transferase
(15)
Salmonella typhimurium
(2)
1a
NTP_transferase-3pkpL01
L:5-243
1b
NTP_transferase-3pkpL02
L:5-243
1c
NTP_transferase-3pkpL03
L:5-243
1d
NTP_transferase-3pkpL04
L:5-243
1e
NTP_transferase-3pkpL05
L:5-243
1f
NTP_transferase-3pkpL06
L:5-243
1g
NTP_transferase-3pkpL07
L:5-243
1h
NTP_transferase-3pkpL08
L:5-243
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Chain D
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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Asym.Unit (787 KB)
Header - Asym.Unit
Biol.Unit 1 (392 KB)
Header - Biol.Unit 1
Biol.Unit 2 (395 KB)
Header - Biol.Unit 2
Biol.Unit 3 (201 KB)
Header - Biol.Unit 3
Biol.Unit 4 (200 KB)
Header - Biol.Unit 4
Biol.Unit 5 (202 KB)
Header - Biol.Unit 5
Biol.Unit 6 (201 KB)
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