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(-) Description

Title :  PHE3GLU MUTANT OF ECFADL
 
Authors :  B. W. Lepore, M. Indic, H. Pham, E. Hearn, D. Patel, B. Van Den Berg
Date :  02 Nov 10  (Deposition) - 25 May 11  (Release) - 07 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Outer Membrane Beta Barrel, Lipid Transport, Outer Membrane (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. W. Lepore, M. Indic, H. Pham, E. M. Hearn, D. R. Patel, B. Van Den Ber
From The Cover: Ligand-Gated Diffusion Across The Bacterial Outer Membrane.
Proc. Natl. Acad. Sci. Usa V. 108 10121 2011
PubMed-ID: 21593406  |  Reference-DOI: 10.1073/PNAS.1018532108

(-) Compounds

Molecule 1 - LONG-CHAIN FATTY ACID TRANSPORT PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: C43
    Expression System Taxid: 562
    Fragment: MATURE FORM (UNP RESIDUES 26-446)
    Gene: B2344, FADL, JW2341, TTR
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI K-12
    Organism Taxid: 83333
    Strain: K12
    Synonym: OUTER MEMBRANE FADL PROTEIN, OUTER MEMBRANE FLP PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 22)

Asymmetric/Biological Unit (5, 22)
No.NameCountTypeFull Name
12PE3Ligand/IonNONAETHYLENE GLYCOL
2C8E14Ligand/Ion(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
3NA2Ligand/IonSODIUM ION
4NI2Ligand/IonNICKEL (II) ION
5OLA1Ligand/IonOLEIC ACID

(-) Sites  (22, 22)

Asymmetric Unit (22, 22)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:225 , TYR A:227 , TRP A:275BINDING SITE FOR RESIDUE C8E A 428
02AC2SOFTWAREALA A:96 , SER A:97 , ILE A:98 , ASN A:129 , LEU A:130 , ILE A:289 , C8E A:433BINDING SITE FOR RESIDUE C8E A 429
03AC3SOFTWARELEU A:369 , TYR A:389 , C8E A:431BINDING SITE FOR RESIDUE C8E A 430
04AC4SOFTWAREGLN A:180 , TRP A:411 , PHE A:413 , C8E A:430 , C8E A:432BINDING SITE FOR RESIDUE C8E A 431
05AC5SOFTWARETHR A:178 , GLN A:180 , GLY A:181 , C8E A:431BINDING SITE FOR RESIDUE C8E A 432
06AC6SOFTWARELEU A:128 , PHE A:146 , PHE A:207 , GLY A:208 , TRP A:209 , C8E A:429BINDING SITE FOR RESIDUE C8E A 433
07AC7SOFTWAREMET A:82 , ILE A:327BINDING SITE FOR RESIDUE C8E A 434
08AC8SOFTWARETRP A:339 , 2PE A:437 , C8E A:439BINDING SITE FOR RESIDUE C8E A 435
09AC9SOFTWARELEU A:5 , GLY A:48 , ALA A:77 , TRP A:78 , PRO A:80 , ASN A:81 , MET A:82 , THR A:125 , 2PE A:438 , HOH A:456 , HOH A:678BINDING SITE FOR RESIDUE 2PE A 436
10BC1SOFTWARETRP A:78 , GLY A:372 , VAL A:385 , PHE A:413 , GLY A:414 , THR A:415 , C8E A:435 , C8E A:443BINDING SITE FOR RESIDUE 2PE A 437
11BC2SOFTWARETRP A:140 , TYR A:215 , 2PE A:436BINDING SITE FOR RESIDUE 2PE A 438
12BC3SOFTWAREVAL A:166 , C8E A:435BINDING SITE FOR RESIDUE C8E A 439
13BC4SOFTWAREHIS A:423 , HIS A:425 , HOH A:681 , HOH A:682BINDING SITE FOR RESIDUE NI A 440
14BC5SOFTWAREASP A:349 , ASP A:365 , HOH A:683BINDING SITE FOR RESIDUE NI A 441
15BC6SOFTWAREPRO A:54 , ASP A:55 , ASN A:72BINDING SITE FOR RESIDUE NA A 442
16BC7SOFTWARETRP A:287 , THR A:331 , TYR A:333 , 2PE A:437BINDING SITE FOR RESIDUE C8E A 443
17BC8SOFTWAREGLY A:132 , PHE A:142 , GLY A:143 , LEU A:144BINDING SITE FOR RESIDUE C8E A 444
18BC9SOFTWAREGLY A:60 , SER A:67 , HOH A:516 , HOH A:554BINDING SITE FOR RESIDUE NA A 445
19CC1SOFTWAREARG A:282 , GLN A:286 , LYS A:305 , TYR A:334 , TYR A:335 , ASP A:336 , HOH A:545 , HOH A:567BINDING SITE FOR RESIDUE C8E A 446
20CC2SOFTWAREGLN A:164 , ALA A:167 , GLY A:168 , GLN A:169 , MET A:171 , GLN A:172 , GLN A:182 , ALA A:185 , ASN A:189BINDING SITE FOR RESIDUE C8E A 447
21CC3SOFTWAREGLN A:4 , ASN A:6 , GLU A:7 , GLN A:364 , ARG A:366 , TRP A:368 , MET A:390 , GLY A:408 , LYS A:409 , HOH A:536 , HOH A:582BINDING SITE FOR RESIDUE OLA A 448
22CC4SOFTWAREGLU A:273 , SER A:297 , PHE A:321 , TYR A:419BINDING SITE FOR RESIDUE C8E A 449

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3PGU)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Arg A:245 -Ala A:246
2Phe A:247 -Asn A:248

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3PGU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3PGU)

(-) Exons   (0, 0)

(no "Exon" information available for 3PGU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:408
 aligned with FADL_ECOLI | P10384 from UniProtKB/Swiss-Prot  Length:446

    Alignment length:425
                                                                                                                                                                                                                                                                                                                                                                                                                                                              446    
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445|    
           FADL_ECOLI    26 AGFQLNEFSSSGLGRAYSGEGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTAWVPNMHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGIDSNTKIAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYGLPIPTATGGATQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAF----   -
               SCOP domains d3pgua_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains Toluene_X-3pguA01 A:1-421                                                                                                                                                                                                                                                                                                                                                                                                            ---- Pfam domains
         Sec.struct. author ........hhhhhhh..........hhhhhhhhhhhhhhh...eeeeeeeeeeeeeeee.................eeeeeeeeeee....eeeeeeee...eeeee............eeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeeeeeeeeeeeeeeeeee..eeeeeeee..eeeee..-------........----------....eeeee.eeeeeeeeeeee..eeeeeeeeeeee.....eeeeee..eeeeee....eeeeeeeeeeeee....eeeeeeeeeee...hhhhh........eeeeeeeeeee....eeeeeeeeeeee..eeeee..eeeeeeeeeeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pgu A   1 AGEQLNEFSSSGLGRAYSGEGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTAWVPNMHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGIDSNTKIAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKG-------RAFNNYGL----------QSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAFHHHH 425
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230      |  -    |  250 |       -  |    270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420     
                                                                                                                                                                                                                                                                      237     245    252        263
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Membrane and cell surface proteins and peptides (2046)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3PGU)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: MBB (97)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (FADL_ECOLI | P10384)
molecular function
    GO:0022834    ligand-gated channel activity    Enables the transmembrane transfer of a solute by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts.
    GO:0015483    long-chain fatty acid transporting porin activity    Enables the transfer of long-chain fatty acids from one side of the membrane to the other. A long-chain fatty acid is a fatty acid with a chain length between C13 and C22. This transporter is a porin and so enables the energy independent passage of substances, sized less than 1000 Da, across a membrane. The transmembrane portions of porins consist exclusively of beta-strands which form a beta-barrel. They are found in the outer membranes of Gram-negative bacteria, mitochondria, plastids and possibly acid-fast Gram-positive bacteria.
biological process
    GO:0006869    lipid transport    The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
    GO:0015909    long-chain fatty acid transport    The directed movement of long-chain fatty acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A long-chain fatty acid is a fatty acid with a chain length between C13 and C22.
    GO:0015718    monocarboxylic acid transport    The directed movement of monocarboxylic acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0055085    transmembrane transport    The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FADL_ECOLI | P10384: 1t16 1t1l 2r4l 2r4n 2r4o 2r4p 2r88 2r89 2r8a 3dwn 3pf1 3pgr 3pgs

(-) Related Entries Specified in the PDB File

1t16 WILD-TYPE E. COLI FADL WITH ALTERNATIVE N-TERMINAL CONFORMATION AND ORDERED LOOPS
1t1l WILD-TYPE E. COLI FADL WITH ALTERNATIVE N-TERMINAL CONFORMATION AND ORDERED LOOPS