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(-) Description

Title :  THE CRYTSAL STRUCTURE OF FLGD FROM P. AERUGINOSA
 
Authors :  D. Wang, M. Luo, S. Niu
Date :  10 Sep 10  (Deposition) - 04 May 11  (Release) - 26 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C  (2x)
Biol. Unit 3:  D  (2x)
Keywords :  Flgd, Flagellum, P. Aeruginosa, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Zhou, M. Luo, X. Cai, J. Tang, S. Niu, W. Zhang, Y. Hu, Y. Yin, A. Huang, D. Wang, D. Wang
Crystal Structure Of A Novel Dimer Form Of Flgd From P. Aeruginosa Pao1
Proteins V. 79 2346 2011
PubMed-ID: 21604306  |  Reference-DOI: 10.1002/PROT.23058

(-) Compounds

Molecule 1 - FLAGELLAR BASAL-BODY ROD MODIFICATION PROTEIN FLGD
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28-FLGD
    Expression System Strain: B834
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES IN UNP 100-237
    Gene: FLGD, PA1079
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Strain: PAO1
    Synonym: FLAGELLAR HOOK-CAPPING PROTEIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (2x):   C 
Biological Unit 3 (2x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 10)

Asymmetric Unit (1, 10)
No.NameCountTypeFull Name
1GOL10Ligand/IonGLYCEROL
Biological Unit 1 (1, 7)
No.NameCountTypeFull Name
1GOL7Ligand/IonGLYCEROL
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
Biological Unit 3 (1, 4)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:52 , ASN A:54 , ASN D:51 , ASP D:68 , ASP D:71BINDING SITE FOR RESIDUE GOL A 138
02AC2SOFTWAREASN A:51 , ASP A:68 , HOH A:159 , ARG D:52 , ASN D:54BINDING SITE FOR RESIDUE GOL A 139
03AC3SOFTWAREVAL A:49 , VAL A:50 , ASP A:71 , SER A:72 , SER A:73 , TRP C:39 , ARG C:52BINDING SITE FOR RESIDUE GOL A 140
04AC4SOFTWAREALA A:13 , THR A:14 , ASP A:15 , GLN A:98 , LYS A:131 , SER B:130BINDING SITE FOR RESIDUE GOL A 141
05AC5SOFTWAREARG B:52 , ASN B:54 , ASN C:51 , ASP C:68 , ASP C:71 , HOH C:168BINDING SITE FOR RESIDUE GOL B 138
06AC6SOFTWAREASN B:51 , ASP B:68 , LYS B:70 , ARG C:52 , ILE C:53 , ASN C:54BINDING SITE FOR RESIDUE GOL B 139
07AC7SOFTWAREVAL B:49 , VAL B:50 , ASP B:71 , SER B:72 , SER B:73 , TRP D:39 , ARG D:52BINDING SITE FOR RESIDUE GOL B 140
08AC8SOFTWAREARG A:52 , VAL C:49 , VAL C:50 , ASP C:71 , SER C:72 , SER C:73 , HOH C:154BINDING SITE FOR RESIDUE GOL C 138
09AC9SOFTWARETRP B:39 , ARG B:52 , VAL D:49 , VAL D:50 , ASP D:71 , SER D:72 , SER D:73 , HOH D:161BINDING SITE FOR RESIDUE GOL D 138
10BC1SOFTWARETHR B:48 , GLU D:85 , ALA D:86 , GLN D:87 , GLY D:96 , LEU D:97 , HOH D:175 , HOH D:183BINDING SITE FOR RESIDUE GOL D 139

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OSV)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:111 -Gln A:112

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OSV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OSV)

(-) Exons   (0, 0)

(no "Exon" information available for 3OSV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:131
 aligned with Q9I4Q0_PSEAE | Q9I4Q0 from UniProtKB/TrEMBL  Length:237

    Alignment length:134
                                   112       122       132       142       152       162       172       182       192       202       212       222       232    
         Q9I4Q0_PSEAE   103 SSLVGRKVIVATDKSVVDTKDTFKASLNLPVSSSNVWVNVYDDKGTVVNRINLGQQAAGSVSFMWDGKDSSGNIMPPGTYKFEAQTSIDGKTYGLQTYLPANVDSVTLGQNGGELMLNLAGLGSIALSKVQIIG 236
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee..eeee.....eeeeeee...eeeeeeeee.....eeeeeeeeee..eeeeeee............eeeeeeeeeee..eeeee.eeeeeeeeeeee..---.eeeee...eeehhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3osv A   3 SSLVGRKVIVATDKSVVDTKDTFKASLNLPVSSSNVWVNVYDDKGTVVNRINLGQQAAGSVSFMWDGKDSSGNIMPPGTYKFEAQTSIDGKTYGLQTYLPANVDSVTLGQ---ELMLNLAGLGSIALSKVQIIG 136
                                    12        22        32        42        52        62        72        82        92       102       112   |   122       132    
                                                                                                                                       112 116                    


Chain B from PDB  Type:PROTEIN  Length:131
 aligned with Q9I4Q0_PSEAE | Q9I4Q0 from UniProtKB/TrEMBL  Length:237

    Alignment length:135
                                   111       121       131       141       151       161       171       181       191       201       211       221       231     
         Q9I4Q0_PSEAE   102 ASSLVGRKVIVATDKSVVDTKDTFKASLNLPVSSSNVWVNVYDDKGTVVNRINLGQQAAGSVSFMWDGKDSSGNIMPPGTYKFEAQTSIDGKTYGLQTYLPANVDSVTLGQNGGELMLNLAGLGSIALSKVQIIG 236
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee..eeee.....eeeeeee...eeeeeeeeee....eeeeeeeeee..eeeeeee............eeeeeeeeeee..eeeee.eeeeeeeeeee.----...eeee...eeehhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3osv B   2 ASSLVGRKVIVATDKSVVDTKDTFKASLNLPVSSSNVWVNVYDDKGTVVNRINLGQQAAGSVSFMWDGKDSSGNIMPPGTYKFEAQTSIDGKTYGLQTYLPANVDSVTL----GELMLNLAGLGSIALSKVQIIG 136
                                    11        21        31        41        51        61        71        81        91       101        |-   |   121       131     
                                                                                                                                      110  115                     


Chain C from PDB  Type:PROTEIN  Length:132
 aligned with Q9I4Q0_PSEAE | Q9I4Q0 from UniProtKB/TrEMBL  Length:237

    Alignment length:135
                                   111       121       131       141       151       161       171       181       191       201       211       221       231     
         Q9I4Q0_PSEAE   102 ASSLVGRKVIVATDKSVVDTKDTFKASLNLPVSSSNVWVNVYDDKGTVVNRINLGQQAAGSVSFMWDGKDSSGNIMPPGTYKFEAQTSIDGKTYGLQTYLPANVDSVTLGQNGGELMLNLAGLGSIALSKVQIIG 236
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee..eeee.....eeeeeee...eeeeeeeee.....eeeeeeeeee..eeeeeee............eeeeeeeeeee..eeeee.eeeeeeeeeeee.---..eeeee...eeehhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3osv C   2 ASSLVGRKVIVATDKSVVDTKDTFKASLNLPVSSSNVWVNVYDDKGTVVNRINLGQQAAGSVSFMWDGKDSSGNIMPPGTYKFEAQTSIDGKTYGLQTYLPANVDSVTLG---GELMLNLAGLGSIALSKVQIIG 136
                                    11        21        31        41        51        61        71        81        91       101       111   |   121       131     
                                                                                                                                       111 115                     


Chain D from PDB  Type:PROTEIN  Length:129
 aligned with Q9I4Q0_PSEAE | Q9I4Q0 from UniProtKB/TrEMBL  Length:237

    Alignment length:133
                                   112       122       132       142       152       162       172       182       192       202       212       222       232   
         Q9I4Q0_PSEAE   103 SSLVGRKVIVATDKSVVDTKDTFKASLNLPVSSSNVWVNVYDDKGTVVNRINLGQQAAGSVSFMWDGKDSSGNIMPPGTYKFEAQTSIDGKTYGLQTYLPANVDSVTLGQNGGELMLNLAGLGSIALSKVQII 235
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------FlgD_ig-3osvD01 D:13-92                                                         ------------------------------------------- Pfam domains (1)
           Pfam domains (2) ----------FlgD_ig-3osvD02 D:13-92                                                         ------------------------------------------- Pfam domains (2)
           Pfam domains (3) ----------FlgD_ig-3osvD03 D:13-92                                                         ------------------------------------------- Pfam domains (3)
           Pfam domains (4) ----------FlgD_ig-3osvD04 D:13-92                                                         ------------------------------------------- Pfam domains (4)
           Pfam domains (5) FLgD_tudor-3osvD05 D:3-135                                                                                                            Pfam domains (5)
           Pfam domains (6) FLgD_tudor-3osvD06 D:3-135                                                                                                            Pfam domains (6)
           Pfam domains (7) FLgD_tudor-3osvD07 D:3-135                                                                                                            Pfam domains (7)
           Pfam domains (8) FLgD_tudor-3osvD08 D:3-135                                                                                                            Pfam domains (8)
         Sec.struct. author ......eeeee..eeee.....eeeeeee...eeeeeeeeee....eeeeeeeeee..eeeeeee............eeeeeeeeeee..eeeee.eeeeeeeeeee..----..eeee...eeehhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3osv D   3 SSLVGRKVIVATDKSVVDTKDTFKASLNLPVSSSNVWVNVYDDKGTVVNRINLGQQAAGSVSFMWDGKDSSGNIMPPGTYKFEAQTSIDGKTYGLQTYLPANVDSVTLG----ELMLNLAGLGSIALSKVQII 135
                                    12        22        32        42        52        62        72        82        92       102        |-   |   122       132   
                                                                                                                                      111  116
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3OSV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OSV)

(-) Pfam Domains  (2, 8)

Asymmetric Unit
(-)
Clan: E-set (290)
(-)
Clan: no clan defined [family: FLgD_tudor] (1)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q9I4Q0_PSEAE | Q9I4Q0)
biological process
    GO:0044781    bacterial-type flagellum organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a bacterial-type flagellum, a motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope which functions in cell motility.
    GO:0071978    bacterial-type flagellum-dependent swarming motility    Bacterial-type flagellum-dependent cell motility in which the action of numerous flagella results in the smooth movement of a group of cells along a solid surface. Swarming motility is observed in groups of bacteria.
cellular component
    GO:0009424    bacterial-type flagellum hook    The portion of the flagellum that connects the filament to the basal body. Examples of this component are found in bacteria.

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