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(-) Description

Title :  CRYSTAL STRUCTURE OF TTHA0988 IN SPACE GROUP P6522
 
Authors :  D. A. Jacques, S. Kuramitsu, S. Yokoyama, J. Trewhella, J. M. Guss, Rike Structural Genomics/Proteomics Initiative (Rsgi)
Date :  07 Sep 10  (Deposition) - 02 Feb 11  (Release) - 02 Feb 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Kipi, Kipa, Cyclophilin, Allophanate Hydrolase, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function, Nppsfa, National Project On Protein Structural And Functional Analyses (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. A. Jacques, D. B. Langley, S. Kuramitsu, S. Yokoyama, J. Trewhella, J. M. Guss
The Structure Of Ttha0988 From Thermus Thermophilus, A Kipi-Kipa Homologue Incorrectly Annotated As An Allophanate Hydrolase
Acta Crystallogr. , Sect. D V. 67 105 2011
PubMed-ID: 21245531  |  Reference-DOI: 10.1107/S0907444910051127

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN TTHA0988
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: ROSETTA2
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TTHA0988
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3ORE)

(-) Sites  (0, 0)

(no "Site" information available for 3ORE)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3ORE)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ala A:127 -Glu A:128
2Gly A:327 -Pro A:328

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ORE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3ORE)

(-) Exons   (0, 0)

(no "Exon" information available for 3ORE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:481
 aligned with Q5SJM0_THET8 | Q5SJM0 from UniProtKB/TrEMBL  Length:494

    Alignment length:492
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491  
         Q5SJM0_THET8     2 VRGFYLRFGEGVSEEANRRALALAEALLRAPPPGLLDAVPAYGVLYLEYDPRRLSRGRLLRLLKGLPQERAEEGRVVEIPVRYDGEDLPEVASRLGLSLEAVKALHQKPLYRVYALGFTPGFPFLAEVEPALRLPRKPHPRPRVPAHAVAVAGVQTGIYPLPSPGGWNLLGTSLVAVYDPHRETPFLLRPGDRVRFLEAEGPTPPEPRPLELLPEEPRLPALLVEEPGLMDLVVDGGRFLGGHLGLARSGPLDAPSARLANRLVGNGAGAPLLEFAYKGPVLTALRDLVAAFAGYGFVALLEGEEIPPGQSFLWPRGKTLRFRPRGPGVRGYLAVAGGLEVRPFLGSASPDLRGRIGRPLWAGDVLGLEALRPVRPGRAFPQRPLPEAFRLRLLPGPQFAGEAFRALCSGPFRVARADRVGVELLGPEVPGGEGLSEPTPLGGVQVPPSGRPLVLLADKGSLGGYAKPALVDPRDLWLLGQARPGVEIHFTS 493
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains AHS1-3oreA01 A:2-189                                                                                                                                                                        ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhhhhhhhhhh....eeeeeee..eeeeee.....hhhhhhhhhhh.--------.eeeeeee....hhhhhhhhhh.hhhhhhhhhhh..eeeeee......eeee..hhhhh.......eeee...eeeee..eeee....eee..eeeeee...................eeeeee.....................eeeeeee.....eee..................hhhhhhhhhhhh.......eeeee....eeee...eeeeeee..eeeee..eee...eeeee....eeeeee.....eeeeee.............................eee.....................eeeeeee...---hhhhhhhh..eeeeee...eeeee.......eeeeee....eeee......eee......eeeeeeeeee...hhhhhhh.....eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ore A   2 VRGFYLRFGEGVSEEANRRALALAEALLRAPPPGLLDAVPAYGVLYLEYDPRRLSRGRLLRLLKGL--------RVVEIPVRYDGEDLPEVASRLGLSLEAVKALHQKPLYRVYALGFTPGFPFLAEVEPALRLPRKPHPRPRVPAHAVAVAGVQTGIYPLPSPGGWNLLGTSLVAVYDPHRETPFLLRPGDRVRFLEAEGPTPPEPRPLELLPEEPRLPALLVEEPGLMDLVVDGGRFLGGHLGLARSGPLDAPSARLANRLVGNGAGAPLLEFAYKGPVLTALRDLVAAFAGYGFVALLEGEEIPPGQSFLWPRGKTLRFRPRGPGVRGYLAVAGGLEVRPFLGSASPDLRGRIGRPLWAGDVLGLEALRPVRPGRAFPQRPLPEAFRLRLLPGPQ---EAFRALCSGPFRVARADRVGVELLGPEVPGGEGLSEPTPLGGVQVPPSGRPLVLLADKGSLGGYAKPALVDPRDLWLLGQARPGVEIHFTS 493
                                    11        21        31        41        51        61     |   -    |   81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       | - |     411       421       431       441       451       461       471       481       491  
                                                                                            67       76                                                                                                                                                                                                                                                                                                                                399 403                                                                                          


Chain B from PDB  Type:PROTEIN  Length:263
 aligned with Q5SJM0_THET8 | Q5SJM0 from UniProtKB/TrEMBL  Length:494

    Alignment length:273
                                   230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490   
         Q5SJM0_THET8   221 PALLVEEPGLMDLVVDGGRFLGGHLGLARSGPLDAPSARLANRLVGNGAGAPLLEFAYKGPVLTALRDLVAAFAGYGFVALLEGEEIPPGQSFLWPRGKTLRFRPRGPGVRGYLAVAGGLEVRPFLGSASPDLRGRIGRPLWAGDVLGLEALRPVRPGRAFPQRPLPEAFRLRLLPGPQFAGEAFRALCSGPFRVARADRVGVELLGPEVPGGEGLSEPTPLGGVQVPPSGRPLVLLADKGSLGGYAKPALVDPRDLWLLGQARPGVEIHFTS 493
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------------AH S2-3oreB01 B:244-493                                                                                                                                                                                                                                    Pfam domains (1)
           Pfam domains (2) -----------------------AH S2-3oreB02 B:244-493                                                                                                                                                                                                                                    Pfam domains (2)
         Sec.struct. author ..eeeee.....eee..........-.......hhhhhhhhhhhh.......eeeee....eeee...eeeeeee..eeeee..eee...eeeee....eeeeee.....eeeeee.............................ee......................eeeeeee....hhhhhhhhh...eeeeee...eeeee........-----....eeee.----.eee..........eeeeee.hhhhhhhhh.....eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ore B 221 PALLVEEPGLMDLVVDGGRFLGGHL-LARSGPLDAPSARLANRLVGNGAGAPLLEFAYKGPVLTALRDLVAAFAGYGFVALLEGEEIPPGQSFLWPRGKTLRFRPRGPGVRGYLAVAGGLEVRPFLGSASPDLRGRIGRPLWAGDVLGLEALRPVRPGRAFPQRPLPEAFRLRLLPGPQFAGEAFRALCSGPFRVARADRVGVELLGPEVPGGE-----TPLGGVQVP----PLVLLADKGSLGGYAKPALVDPRDLWLLGQARPGVEIHFTS 493
                                   230       240    | |250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430   |   440       | -  |    460       470       480       490   
                                                  245 |                                                                                                                                                                                        434   440     448  453                                        
                                                    247
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3ORE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ORE)

(-) Pfam Domains  (2, 3)

Asymmetric Unit
(-)
Clan: Cyclophil-like (65)
(-)
Clan: no clan defined [family: AHS2] (4)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3ORE)

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  Cis Peptide Bonds
    Ala A:127 - Glu A:128   [ RasMol ]  
    Gly A:327 - Pro A:328   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5SJM0_THET8 | Q5SJM0: 3oep 3opf

(-) Related Entries Specified in the PDB File

3oep THE SAME PROTEIN IN SPACEGROUP P43212
3opf THE SAME PROTEIN IN SPACEGROUP P212121 RELATED ID: TTK003001624.1 RELATED DB: TARGETDB