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(-) Description

Title :  CRYSTAL STRUCTURE OF TTHA0988 IN SPACE GROUP P43212
 
Authors :  D. A. Jacques, D. B. Langley, J. Trewhella, J. M. Guss
Date :  13 Aug 10  (Deposition) - 24 Nov 10  (Release) - 02 Feb 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A
Keywords :  Kipi, Kipa, Cyclophilin, Allophanate Hydrolase, Structural Genomics, Unknown Function, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. A. Jacques, D. B. Langley, S. Kuramitsu, S. Yokoyama, J. Trewhella, J. M. Guss
The Structure Of Ttha0988 From Thermus Thermophilus, A Kipi-Kipa Homologue Incorrectly Annotated As An Allophanate Hydrolase
Acta Crystallogr. , Sect. D V. 67 105 2011
PubMed-ID: 21245531  |  Reference-DOI: 10.1107/S0907444910051127

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN TTHA0988
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-11A
    Expression System Strain: ROSETTA2
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TTHA0988
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2SO41Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:97 , ARG A:287 , ASP A:288 , LEU A:289 , VAL A:290 , HOH A:586 , HOH A:664 , HOH A:757BINDING SITE FOR RESIDUE GOL A 500
2AC2SOFTWAREPHE A:119 , PHE A:125 , TYR A:160 , GLY A:166 , TRP A:168 , HOH A:749 , HOH A:828 , HOH A:834BINDING SITE FOR RESIDUE GOL A 501
3AC3SOFTWAREGLU A:201 , GLY A:202 , PRO A:203 , ARG A:414 , ALA A:416 , LEU A:426 , GLY A:486 , HOH A:518BINDING SITE FOR RESIDUE GOL A 502
4AC4SOFTWAREARG A:263 , GLY A:268 , ALA A:269 , HOH A:806BINDING SITE FOR RESIDUE SO4 A 600

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OEP)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ala A:127 -Glu A:128

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OEP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OEP)

(-) Exons   (0, 0)

(no "Exon" information available for 3OEP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:486
 aligned with Q5SJM0_THET8 | Q5SJM0 from UniProtKB/TrEMBL  Length:494

    Alignment length:493
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490   
         Q5SJM0_THET8     1 MVRGFYLRFGEGVSEEANRRALALAEALLRAPPPGLLDAVPAYGVLYLEYDPRRLSRGRLLRLLKGLPQERAEEGRVVEIPVRYDGEDLPEVASRLGLSLEAVKALHQKPLYRVYALGFTPGFPFLAEVEPALRLPRKPHPRPRVPAHAVAVAGVQTGIYPLPSPGGWNLLGTSLVAVYDPHRETPFLLRPGDRVRFLEAEGPTPPEPRPLELLPEEPRLPALLVEEPGLMDLVVDGGRFLGGHLGLARSGPLDAPSARLANRLVGNGAGAPLLEFAYKGPVLTALRDLVAAFAGYGFVALLEGEEIPPGQSFLWPRGKTLRFRPRGPGVRGYLAVAGGLEVRPFLGSASPDLRGRIGRPLWAGDVLGLEALRPVRPGRAFPQRPLPEAFRLRLLPGPQFAGEAFRALCSGPFRVARADRVGVELLGPEVPGGEGLSEPTPLGGVQVPPSGRPLVLLADKGSLGGYAKPALVDPRDLWLLGQARPGVEIHFTS 493
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -AHS1-3oepA01 A:2-189                                                                                                                                                                        ------------------------------------------------------AHS2-3oepA02 A:244-493                                                                                                                                                                                                                                     Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhhhhhhh....eeeeeee..eeeeee.....hhhhhhhhhhhh.-------.eeeeeee....hhhhhhhhhh.hhhhhhhhhhh..eeeeee......eeee..hhhhh.......eeee...eeeee..eeee....eee..eeeeee...................eeeeee.....................eeeeeee.....eee......hhhhh.......hhhhhhhhhhhh.......eeeee....eeee...eeeeeee..eeeee..eee...eeeee....eeeeee.....eeeeee.............................eee.....................eeeeeee....hhhhhhhhh...eeeeee...eeeee.......eeeeee....eeee......eee......eeeeeeeeee...hhhhhh......eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oep A   1 MVRGFYLRFGEGVSEEANRRALALAEALLRAPPPGLLDAVPAYGVLYLEYDPRRLSRGRLLRLLKGLP-------RVVEIPVRYDGEDLPEVASRLGLSLEAVKALHQKPLYRVYALGFTPGFPFLAEVEPALRLPRKPHPRPRVPAHAVAVAGVQTGIYPLPSPGGWNLLGTSLVAVYDPHRETPFLLRPGDRVRFLEAEGPTPPEPRPLELLPEEPRLPALLVEEPGLMDLVVDGGRFLGGHLGLARSGPLDAPSARLANRLVGNGAGAPLLEFAYKGPVLTALRDLVAAFAGYGFVALLEGEEIPPGQSFLWPRGKTLRFRPRGPGVRGYLAVAGGLEVRPFLGSASPDLRGRIGRPLWAGDVLGLEALRPVRPGRAFPQRPLPEAFRLRLLPGPQFAGEAFRALCSGPFRVARADRVGVELLGPEVPGGEGLSEPTPLGGVQVPPSGRPLVLLADKGSLGGYAKPALVDPRDLWLLGQARPGVEIHFTS 493
                                    10        20        30        40        50        60       | -     |  80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490   
                                                                                              68      76
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3OEP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OEP)

(-) Pfam Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Clan: Cyclophil-like (65)
(-)
Clan: no clan defined [family: AHS2] (4)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3OEP)

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  Cis Peptide Bonds
    Ala A:127 - Glu A:128   [ RasMol ]  
 

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        Q5SJM0_THET8 | Q5SJM0: 3opf 3ore

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