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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE 3-KETOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE FROM VIBRIO CHOLERAE O1 BIOVAR ELTOR STR. N16961 IN COMPLEX WITH NADP+
 
Authors :  J. Hou, M. Chruszcz, O. Onopriyenko, S. Grimshaw, P. Porebski, H. Zheng A. Savchenko, W. Anderson, W. Minor, Center For Structural Genomi Infectious Diseases (Csgid)
Date :  31 Aug 10  (Deposition) - 22 Sep 10  (Release) - 23 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  3-Ketoacyl-(Acyl-Carrier-Protein) Reductase, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Rossmann Fold, Bacterial Cell, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Hou, H. Zheng, M. Chruszcz, M. D. Zimmerman, I. A. Shumilin, T. Osinski, M. Demas, S. Grimshaw, W. Minor
Dissecting The Structural Elements For The Activation Of Beta-Ketoacyl-(Acyl Carrier Protein) Reductase From Vibrio Cholerae.
J. Bacteriol. V. 198 463 2015
PubMed-ID: 26553852  |  Reference-DOI: 10.1128/JB.00360-15

(-) Compounds

Molecule 1 - 3-OXOACYL-[ACYL-CARRIER PROTEIN] REDUCTASE
    Chains: A, B
    EC Number: 1.1.1.100
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21-CODONPLUS(DE3)-RIPL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: VCD_002346
    Organism Scientific: VIBRIO CHOLERAE O1 BIOVAR EL TOR
    Organism Taxid: 243277
    Strain: N16961

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 28)

Asymmetric Unit (3, 28)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2MSE24Mod. Amino AcidSELENOMETHIONINE
3NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Biological Unit 1 (3, 56)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2MSE48Mod. Amino AcidSELENOMETHIONINE
3NAP4Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:16 , SER A:18 , ARG A:19 , GLY A:20 , ILE A:21 , THR A:41 , LEU A:62 , ASN A:63 , VAL A:64 , ASN A:90 , ALA A:91 , GLY A:92 , ILE A:93 , VAL A:140 , GLY A:141 , SER A:142 , TYR A:155 , LYS A:159 , PRO A:185 , GLY A:186 , PHE A:187 , ILE A:188 , THR A:190 , MSE A:192 , THR A:193 , ACT A:250 , HOH A:262 , HOH A:275 , HOH A:281 , HOH A:282 , HOH A:298 , HOH A:322 , HOH A:331 , HOH A:407 , HOH A:408 , HOH A:432 , HOH A:494BINDING SITE FOR RESIDUE NAP A 249
2AC2SOFTWARESER A:142 , TYR A:155 , PHE A:187 , NAP A:249 , HOH A:567 , HOH A:595BINDING SITE FOR RESIDUE ACT A 250
3AC3SOFTWAREGLY B:16 , SER B:18 , ARG B:19 , ILE B:21 , THR B:41 , LEU B:62 , ASN B:63 , VAL B:64 , ASN B:90 , ALA B:91 , VAL B:140 , GLY B:141 , TYR B:155 , LYS B:159 , PRO B:185 , GLY B:186 , ILE B:188 , THR B:190 , MSE B:192 , ACT B:250 , HOH B:282 , HOH B:285 , HOH B:294 , HOH B:305 , HOH B:333 , HOH B:336 , HOH B:366 , HOH B:419 , HOH B:431 , HOH B:459 , HOH B:588BINDING SITE FOR RESIDUE NAP B 249
4AC4SOFTWARESER B:142 , TYR B:155 , PHE B:187 , NAP B:249 , HOH B:320 , HOH B:608BINDING SITE FOR RESIDUE ACT B 250

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OP4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3OP4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OP4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OP4)

(-) Exons   (0, 0)

(no "Exon" information available for 3OP4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains d3op4a_ A: automated matches                                                                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee...........hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3op4 A   2 SQFmNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGmALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLmRmKEEEWSDImETNLTSIFRLSKAVLRGmmKKRQGRIINVGSVVGTmGNAGQANYAAAKAGVIGFTKSmAREVASRGVTVNTVAPGFIETDmTKALNDEQRTATLAQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGGmYmI 248
                               |    11        21        31        41        51        61        71        81        91       101|      111       121       131       141     | 151       161       171       181       191|      201       211       221       231       241   | | 
                               |                                                     60-MSE                                 100-MSE    111-MSE           129-MSE           147-MSE               169-MSE                192-MSE                                              245-MSE
                               5-MSE                                                                                          102-MSE                     130-MSE                                                                                                              247-MSE


Chain B from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains d3op4b_ B: automated matches                                                                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhh....eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhh.hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3op4 B   3 QFmNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGmALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLmRmKEEEWSDImETNLTSIFRLSKAVLRGmmKKRQGRIINVGSVVGTmGNAGQANYAAAKAGVIGFTKSmAREVASRGVTVNTVAPGFIETDmTKALNDEQRTATLAQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGGmYmI 248
                              |     12        22        32        42        52       |62        72        82        92       102       112       122      |132       142    |  152       162      |172       182       192       202       212       222       232       242  | | 
                              |                                                     60-MSE                                 100-MSE    111-MSE           129-MSE           147-MSE               169-MSE                192-MSE                                              245-MSE
                              5-MSE                                                                                          102-MSE                     130-MSE                                                                                                              247-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OP4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3OP4)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3OP4)

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