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(-) Description

Title :  CRYSTAL STRUCTURE OF REGULATOR OF POLYKETIDE SYNTHASE EXPRESSION BAD_0249 FROM BIFIDOBACTERIUM ADOLESCENTIS
 
Authors :  Y. Kim, R. Wu, K. Tan, J. Morales, J. Bearden, A. Joachimiak, Midwest Ce Structural Genomics (Mcsg)
Date :  30 Aug 10  (Deposition) - 08 Sep 10  (Release) - 08 Sep 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A (1x),B (1x),C (1x),D (1x)
Biol. Unit 2:  A,C  (1x)
Biol. Unit 3:  B,D  (1x)
Keywords :  Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Helix-Bundle, Alpha-Beta-Alpha Sandwich, Signal Transduction, Cytosol, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, R. Wu, K. Tan, J. Morales, J. Bearden, A. Joachimiak
Crystal Structure Of Regulator Of Polyketide Synthase Expression Bad_0249 From Bifidobacterium Adolescentis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - REGULATOR OF POLYKETIDE SYNTHASE EXPRESSION
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21 MAGIC
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: BAD_0249
    Organism Scientific: BIFIDOBACTERIUM ADOLESCENTIS
    Organism Taxid: 367928
    Strain: ATCC 15703

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A (1x)B (1x)C (1x)D (1x)
Biological Unit 2 (1x): A C 
Biological Unit 3 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 59)

Asymmetric Unit (3, 59)
No.NameCountTypeFull Name
1GOL12Ligand/IonGLYCEROL
2MSE24Mod. Amino AcidSELENOMETHIONINE
3SO423Ligand/IonSULFATE ION
Biological Unit 1 (3, 32)
No.NameCountTypeFull Name
1GOL7Ligand/IonGLYCEROL
2MSE12Mod. Amino AcidSELENOMETHIONINE
3SO413Ligand/IonSULFATE ION
Biological Unit 2 (3, 32)
No.NameCountTypeFull Name
1GOL7Ligand/IonGLYCEROL
2MSE12Mod. Amino AcidSELENOMETHIONINE
3SO413Ligand/IonSULFATE ION
Biological Unit 3 (3, 27)
No.NameCountTypeFull Name
1GOL5Ligand/IonGLYCEROL
2MSE12Mod. Amino AcidSELENOMETHIONINE
3SO410Ligand/IonSULFATE ION

(-) Sites  (35, 35)

Asymmetric Unit (35, 35)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:207 , SER A:208 , LEU A:209 , GLU A:210 , HOH A:679BINDING SITE FOR RESIDUE SO4 A 261
02AC2SOFTWAREPRO A:194 , TYR A:225 , ARG A:226 , ARG A:229 , HOH A:618 , ARG C:226 , GOL C:270 , HOH C:299BINDING SITE FOR RESIDUE SO4 A 262
03AC3SOFTWAREARG A:127 , SER A:128 , GLY A:132 , HOH A:335 , HOH A:744BINDING SITE FOR RESIDUE SO4 A 263
04AC4SOFTWARETYR A:88 , MSE A:141 , PHE A:142 , GLN A:145 , HOH A:352 , HOH A:780BINDING SITE FOR RESIDUE GOL A 264
05AC5SOFTWAREARG A:187 , PRO A:191 , TYR A:196 , ARG A:255 , HOH A:327 , HOH A:371BINDING SITE FOR RESIDUE SO4 A 265
06AC6SOFTWAREARG A:175 , HOH A:310 , GOL C:269BINDING SITE FOR RESIDUE SO4 A 266
07AC7SOFTWARESER A:63 , LEU A:64 , HOH A:296 , HOH A:541BINDING SITE FOR RESIDUE SO4 A 267
08AC8SOFTWARETHR A:103 , PRO A:104 , GLU A:105 , VAL A:106 , HOH A:538 , HOH A:772BINDING SITE FOR RESIDUE SO4 A 268
09AC9SOFTWAREGLU A:105 , CYS A:108 , THR A:109 , MSE A:112 , PRO A:156 , ASP D:35 , ASP D:36BINDING SITE FOR RESIDUE GOL A 269
10BC1SOFTWAREARG A:127 , HOH A:459BINDING SITE FOR RESIDUE SO4 A 260
11BC2SOFTWAREARG B:127 , ASN B:181 , HOH B:296 , HOH B:300BINDING SITE FOR RESIDUE SO4 B 261
12BC3SOFTWAREARG B:127 , SER B:128 , HOH B:290 , HOH B:655BINDING SITE FOR RESIDUE SO4 B 262
13BC4SOFTWARELEU B:45 , HIS B:82 , ARG C:23BINDING SITE FOR RESIDUE SO4 B 263
14BC5SOFTWAREARG B:187 , TYR B:196 , ARG B:255 , HOH B:428BINDING SITE FOR RESIDUE SO4 B 265
15BC6SOFTWAREARG B:226 , ARG B:229 , HOH B:594BINDING SITE FOR RESIDUE SO4 B 266
16BC7SOFTWAREHIS B:219 , ASN B:221 , THR B:222 , GLU C:232 , THR C:233 , THR C:234 , GLY C:235BINDING SITE FOR RESIDUE GOL B 267
17BC8SOFTWAREGLY B:170 , ASP B:172 , ARG B:175 , GLY D:170 , SO4 D:264 , HOH D:599BINDING SITE FOR RESIDUE GOL B 268
18BC9SOFTWARETHR B:31 , ARG B:138 , HOH B:424 , HOH B:487 , HOH B:715BINDING SITE FOR RESIDUE GOL B 269
19CC1SOFTWAREPRO B:241 , ARG B:242 , TYR B:245 , HOH B:277 , HOH B:735 , LEU D:203 , LYS D:204BINDING SITE FOR RESIDUE GOL B 260
20CC2SOFTWARETHR C:103 , PRO C:104 , GLU C:105 , VAL C:106 , HOH C:421 , HOH C:467 , HOH C:471 , HOH C:484 , HOH C:609 , HOH C:638BINDING SITE FOR RESIDUE SO4 C 261
21CC3SOFTWAREARG C:127 , SER C:128 , GLY C:132 , HOH C:301 , HOH C:325 , HOH C:438 , HOH C:519 , HOH C:595BINDING SITE FOR RESIDUE SO4 C 262
22CC4SOFTWAREARG C:138 , HOH C:372 , HOH C:389 , HOH C:761BINDING SITE FOR RESIDUE SO4 C 263
23CC5SOFTWARESER C:208 , LEU C:209 , GLU C:210 , HOH C:343BINDING SITE FOR RESIDUE SO4 C 264
24CC6SOFTWAREARG C:187 , TYR C:196 , ARG C:255BINDING SITE FOR RESIDUE SO4 C 265
25CC7SOFTWAREMSE C:99 , GLY C:100BINDING SITE FOR RESIDUE GOL C 266
26CC8SOFTWAREGLU B:210 , PRO B:220 , ARG C:127 , ASN C:181 , HOH C:338 , HOH C:349 , HOH C:727BINDING SITE FOR RESIDUE GOL C 267
27CC9SOFTWARELYS B:214 , TYR C:179 , ARG C:180 , ARG C:257BINDING SITE FOR RESIDUE GOL C 268
28DC1SOFTWARELEU A:169 , SO4 A:266 , HOH A:352 , HOH A:780 , ASP C:172 , ARG C:175 , HOH C:491BINDING SITE FOR RESIDUE GOL C 269
29DC2SOFTWARETYR A:225 , ARG A:229 , SO4 A:262 , ASP C:193 , PRO C:194 , ARG C:226 , ARG C:229 , HOH C:356BINDING SITE FOR RESIDUE GOL C 270
30DC3SOFTWAREARG D:127 , SER D:128BINDING SITE FOR RESIDUE SO4 D 261
31DC4SOFTWARETHR D:103 , PRO D:104 , GLU D:105 , VAL D:106BINDING SITE FOR RESIDUE SO4 D 262
32DC5SOFTWAREARG D:187 , TYR D:196 , ARG D:255 , ARG D:259 , HOH D:312BINDING SITE FOR RESIDUE SO4 D 263
33DC6SOFTWAREGLY B:170 , GOL B:268 , ARG D:175 , HOH D:268 , HOH D:323BINDING SITE FOR RESIDUE SO4 D 264
34DC7SOFTWARESER D:63 , LEU D:64 , HOH D:530BINDING SITE FOR RESIDUE SO4 D 266
35DC8SOFTWAREARG D:127 , HIS D:135 , GLU D:177 , HOH D:277 , HOH D:475 , HOH D:617BINDING SITE FOR RESIDUE GOL D 267

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3ONQ)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Arg A:155 -Pro A:156
2Arg B:155 -Pro B:156
3Arg C:155 -Pro C:156
4Arg D:155 -Pro D:156

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ONQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3ONQ)

(-) Exons   (0, 0)

(no "Exon" information available for 3ONQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:254
 aligned with A0ZZZ7_BIFAA | A0ZZZ7 from UniProtKB/TrEMBL  Length:259

    Alignment length:254
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255    
         A0ZZZ7_BIFAA     6 ADILDLLSGHTDDTTIERLAFECLLTNMTDDRVVSLMNILGWQGDFNCFAIGGVPSASLASTSLAIRKAVRDLGGEHVVIGTYGTFLLALACQMGAVTPEVTCTAVMPAFSEDEPLYLSPVRSGVAGASHALRETMFSLQAAPALSTPSRPLRADELLPERALLGDDYAREELYRNVYQVLRGENPDDPTYLTVSTFLKYGSSLENTAKELNVHPNTVRYRLKRAAETTGWDATDPRDAYVLTTALAIGRMRDR 259
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh...hhhhhhhhhhhhhhh...hhhhhhhhhhhh.....eeeeeee....hhhhhhhhhhhhhhhh....eeeeee..eeeeeee.....hhhhhhhhhhhhh.....eee...eehhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3onq A   6 ADILDLLSGHTDDTTIERLAFECLLTNmTDDRVVSLmNILGWQGDFNCFAIGGVPSASLASTSLAIRKAVRDLGGEHVVIGTYGTFLLALACQmGAVTPEVTCTAVmPAFSEDEPLYLSPVRSGVAGASHALRETmFSLQAAPALSTPSRPLRADELLPERALLGDDYAREELYRNVYQVLRGENPDDPTYLTVSTFLKYGSSLENTAKELNVHPNTVRYRLKRAAETTGWDATDPRDAYVLTTALAIGRmRDR 259
                                    15        25       |35      | 45        55        65        75        85        95   |   105      |115       125       135     | 145       155       165       175       185       195       205       215       225       235       245       255|   
                                                      33-MSE   42-MSE                                                   99-MSE      112-MSE                      141-MSE                                                                                                            256-MSE


Chain B from PDB  Type:PROTEIN  Length:255
 aligned with A0ZZZ7_BIFAA | A0ZZZ7 from UniProtKB/TrEMBL  Length:259

    Alignment length:255
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254     
         A0ZZZ7_BIFAA     5 QADILDLLSGHTDDTTIERLAFECLLTNMTDDRVVSLMNILGWQGDFNCFAIGGVPSASLASTSLAIRKAVRDLGGEHVVIGTYGTFLLALACQMGAVTPEVTCTAVMPAFSEDEPLYLSPVRSGVAGASHALRETMFSLQAAPALSTPSRPLRADELLPERALLGDDYAREELYRNVYQVLRGENPDDPTYLTVSTFLKYGSSLENTAKELNVHPNTVRYRLKRAAETTGWDATDPRDAYVLTTALAIGRMRDR 259
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh...hhhhhhhhhhhhhhh...hhhhhhhhhhhh.....eeeeeee....hhhhhhhhhhhhhhhh....eeeeee..eeeeeee.....hhhhhhhhhhhhh.....eee...eehhhhhhhhhhhhhhhhhhhhhh......ee...hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3onq B   5 QADILDLLSGHTDDTTIERLAFECLLTNmTDDRVVSLmNILGWQGDFNCFAIGGVPSASLASTSLAIRKAVRDLGGEHVVIGTYGTFLLALACQmGAVTPEVTCTAVmPAFSEDEPLYLSPVRSGVAGASHALRETmFSLQAAPALSTPSRPLRADELLPERALLGDDYAREELYRNVYQVLRGENPDDPTYLTVSTFLKYGSSLENTAKELNVHPNTVRYRLKRAAETTGWDATDPRDAYVLTTALAIGRmRDR 259
                                    14        24        34       |44        54        64        74        84        94    |  104       114       124       134      |144       154       164       174       184       194       204       214       224       234       244       254 |   
                                                       33-MSE   42-MSE                                                   99-MSE      112-MSE                      141-MSE                                                                                                            256-MSE


Chain C from PDB  Type:PROTEIN  Length:243
 aligned with A0ZZZ7_BIFAA | A0ZZZ7 from UniProtKB/TrEMBL  Length:259

    Alignment length:243
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256   
         A0ZZZ7_BIFAA    17 DDTTIERLAFECLLTNMTDDRVVSLMNILGWQGDFNCFAIGGVPSASLASTSLAIRKAVRDLGGEHVVIGTYGTFLLALACQMGAVTPEVTCTAVMPAFSEDEPLYLSPVRSGVAGASHALRETMFSLQAAPALSTPSRPLRADELLPERALLGDDYAREELYRNVYQVLRGENPDDPTYLTVSTFLKYGSSLENTAKELNVHPNTVRYRLKRAAETTGWDATDPRDAYVLTTALAIGRMRDR 259
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh...hhhhhhhhhhh......eeeeeee....hhhhhhhhhhhhhhhh....eeeeee..eeeeeee.....hhhhhhhhhhhhh.....eee...eehhhhhhhhhhhhhhhhhhhhhh......ee...hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3onq C  17 DDTTIERLAFECLLTNmTDDRVVSLmNILGWQGDFNCFAIGGVPSASLASTSLAIRKAVRDLGGEHVVIGTYGTFLLALACQmGAVTPEVTCTAVmPAFSEDEPLYLSPVRSGVAGASHALRETmFSLQAAPALSTPSRPLRADELLPERALLGDDYAREELYRNVYQVLRGENPDDPTYLTVSTFLKYGSSLENTAKELNVHPNTVRYRLKRAAETTGWDATDPRDAYVLTTALAIGRmRDR 259
                                    26      | 36     |  46        56        66        76        86        96  |    106     | 116       126       136    |  146       156       166       176       186       196       206       216       226       236       246       256   
                                           33-MSE   42-MSE                                                   99-MSE      112-MSE                      141-MSE                                                                                                            256-MSE


Chain D from PDB  Type:PROTEIN  Length:242
 aligned with A0ZZZ7_BIFAA | A0ZZZ7 from UniProtKB/TrEMBL  Length:259

    Alignment length:242
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257  
         A0ZZZ7_BIFAA    18 DTTIERLAFECLLTNMTDDRVVSLMNILGWQGDFNCFAIGGVPSASLASTSLAIRKAVRDLGGEHVVIGTYGTFLLALACQMGAVTPEVTCTAVMPAFSEDEPLYLSPVRSGVAGASHALRETMFSLQAAPALSTPSRPLRADELLPERALLGDDYAREELYRNVYQVLRGENPDDPTYLTVSTFLKYGSSLENTAKELNVHPNTVRYRLKRAAETTGWDATDPRDAYVLTTALAIGRMRDR 259
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HTH_30-3onqD01 D:196-253                                  ------ Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HTH_30-3onqD02 D:196-253                                  ------ Pfam domains (2)
           Pfam domains (3) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HTH_30-3onqD03 D:196-253                                  ------ Pfam domains (3)
           Pfam domains (4) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HTH_30-3onqD04 D:196-253                                  ------ Pfam domains (4)
         Sec.struct. author hhhhhhhhhhhhhh...hhhhhhhhhhhh.....eeeeeee....hhhhhhhhhhhhhhhh....eeeeee..eeeeeee.....hhhhhhhhhhhhh.....eee...eehhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhh.hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3onq D  18 DTTIERLAFECLLTNmTDDRVVSLmNILGWQGDFNCFAIGGVPSASLASTSLAIRKAVRDLGGEHVVIGTYGTFLLALACQmGAVTPEVTCTAVmPAFSEDEPLYLSPVRSGVAGASHALRETmFSLQAAPALSTPSRPLRADELLPERALLGDDYAREELYRNVYQVLRGENPDDPTYLTVSTFLKYGSSLENTAKELNVHPNTVRYRLKRAAETTGWDATDPRDAYVLTTALAIGRmRDR 259
                                    27     |  37    |   47        57        67        77    ||  87        97 |     107    |  117       127       137   |   147       157       167       177       187       197       207       217       227       237       247       257  
                                          33-MSE   42-MSE                                 81A|              99-MSE      112-MSE                      141-MSE                                                                                                            256-MSE
                                                                                            83
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3ONQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ONQ)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
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Clan: HTH (544)

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