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3ONQ
Biol. Unit 1
Info
Asym.Unit (350 KB)
Biol.Unit 1 (342 KB)
Biol.Unit 2 (175 KB)
Biol.Unit 3 (172 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF REGULATOR OF POLYKETIDE SYNTHASE EXPRESSION BAD_0249 FROM BIFIDOBACTERIUM ADOLESCENTIS
Authors
:
Y. Kim, R. Wu, K. Tan, J. Morales, J. Bearden, A. Joachimiak, Midwest Ce Structural Genomics (Mcsg)
Date
:
30 Aug 10 (Deposition) - 08 Sep 10 (Release) - 08 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,C (1x)
Biol. Unit 3: B,D (1x)
Keywords
:
Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Helix-Bundle, Alpha-Beta-Alpha Sandwich, Signal Transduction, Cytosol, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kim, R. Wu, K. Tan, J. Morales, J. Bearden, A. Joachimiak
Crystal Structure Of Regulator Of Polyketide Synthase Expression Bad_0249 From Bifidobacterium Adolescentis
To Be Published
[
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Hetero Components
(3, 32)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
7
Ligand/Ion
GLYCEROL
2
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
3
SO4
13
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(35, 35)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:207 , SER A:208 , LEU A:209 , GLU A:210 , HOH A:679
BINDING SITE FOR RESIDUE SO4 A 261
02
AC2
SOFTWARE
PRO A:194 , TYR A:225 , ARG A:226 , ARG A:229 , HOH A:618 , ARG C:226 , GOL C:270 , HOH C:299
BINDING SITE FOR RESIDUE SO4 A 262
03
AC3
SOFTWARE
ARG A:127 , SER A:128 , GLY A:132 , HOH A:335 , HOH A:744
BINDING SITE FOR RESIDUE SO4 A 263
04
AC4
SOFTWARE
TYR A:88 , MSE A:141 , PHE A:142 , GLN A:145 , HOH A:352 , HOH A:780
BINDING SITE FOR RESIDUE GOL A 264
05
AC5
SOFTWARE
ARG A:187 , PRO A:191 , TYR A:196 , ARG A:255 , HOH A:327 , HOH A:371
BINDING SITE FOR RESIDUE SO4 A 265
06
AC6
SOFTWARE
ARG A:175 , HOH A:310 , GOL C:269
BINDING SITE FOR RESIDUE SO4 A 266
07
AC7
SOFTWARE
SER A:63 , LEU A:64 , HOH A:296 , HOH A:541
BINDING SITE FOR RESIDUE SO4 A 267
08
AC8
SOFTWARE
THR A:103 , PRO A:104 , GLU A:105 , VAL A:106 , HOH A:538 , HOH A:772
BINDING SITE FOR RESIDUE SO4 A 268
09
AC9
SOFTWARE
GLU A:105 , CYS A:108 , THR A:109 , MSE A:112 , PRO A:156 , ASP D:35 , ASP D:36
BINDING SITE FOR RESIDUE GOL A 269
10
BC1
SOFTWARE
ARG A:127 , HOH A:459
BINDING SITE FOR RESIDUE SO4 A 260
11
BC2
SOFTWARE
ARG B:127 , ASN B:181 , HOH B:296 , HOH B:300
BINDING SITE FOR RESIDUE SO4 B 261
12
BC3
SOFTWARE
ARG B:127 , SER B:128 , HOH B:290 , HOH B:655
BINDING SITE FOR RESIDUE SO4 B 262
13
BC4
SOFTWARE
LEU B:45 , HIS B:82 , ARG C:23
BINDING SITE FOR RESIDUE SO4 B 263
14
BC5
SOFTWARE
ARG B:187 , TYR B:196 , ARG B:255 , HOH B:428
BINDING SITE FOR RESIDUE SO4 B 265
15
BC6
SOFTWARE
ARG B:226 , ARG B:229 , HOH B:594
BINDING SITE FOR RESIDUE SO4 B 266
16
BC7
SOFTWARE
HIS B:219 , ASN B:221 , THR B:222 , GLU C:232 , THR C:233 , THR C:234 , GLY C:235
BINDING SITE FOR RESIDUE GOL B 267
17
BC8
SOFTWARE
GLY B:170 , ASP B:172 , ARG B:175 , GLY D:170 , SO4 D:264 , HOH D:599
BINDING SITE FOR RESIDUE GOL B 268
18
BC9
SOFTWARE
THR B:31 , ARG B:138 , HOH B:424 , HOH B:487 , HOH B:715
BINDING SITE FOR RESIDUE GOL B 269
19
CC1
SOFTWARE
PRO B:241 , ARG B:242 , TYR B:245 , HOH B:277 , HOH B:735 , LEU D:203 , LYS D:204
BINDING SITE FOR RESIDUE GOL B 260
20
CC2
SOFTWARE
THR C:103 , PRO C:104 , GLU C:105 , VAL C:106 , HOH C:421 , HOH C:467 , HOH C:471 , HOH C:484 , HOH C:609 , HOH C:638
BINDING SITE FOR RESIDUE SO4 C 261
21
CC3
SOFTWARE
ARG C:127 , SER C:128 , GLY C:132 , HOH C:301 , HOH C:325 , HOH C:438 , HOH C:519 , HOH C:595
BINDING SITE FOR RESIDUE SO4 C 262
22
CC4
SOFTWARE
ARG C:138 , HOH C:372 , HOH C:389 , HOH C:761
BINDING SITE FOR RESIDUE SO4 C 263
23
CC5
SOFTWARE
SER C:208 , LEU C:209 , GLU C:210 , HOH C:343
BINDING SITE FOR RESIDUE SO4 C 264
24
CC6
SOFTWARE
ARG C:187 , TYR C:196 , ARG C:255
BINDING SITE FOR RESIDUE SO4 C 265
25
CC7
SOFTWARE
MSE C:99 , GLY C:100
BINDING SITE FOR RESIDUE GOL C 266
26
CC8
SOFTWARE
GLU B:210 , PRO B:220 , ARG C:127 , ASN C:181 , HOH C:338 , HOH C:349 , HOH C:727
BINDING SITE FOR RESIDUE GOL C 267
27
CC9
SOFTWARE
LYS B:214 , TYR C:179 , ARG C:180 , ARG C:257
BINDING SITE FOR RESIDUE GOL C 268
28
DC1
SOFTWARE
LEU A:169 , SO4 A:266 , HOH A:352 , HOH A:780 , ASP C:172 , ARG C:175 , HOH C:491
BINDING SITE FOR RESIDUE GOL C 269
29
DC2
SOFTWARE
TYR A:225 , ARG A:229 , SO4 A:262 , ASP C:193 , PRO C:194 , ARG C:226 , ARG C:229 , HOH C:356
BINDING SITE FOR RESIDUE GOL C 270
30
DC3
SOFTWARE
ARG D:127 , SER D:128
BINDING SITE FOR RESIDUE SO4 D 261
31
DC4
SOFTWARE
THR D:103 , PRO D:104 , GLU D:105 , VAL D:106
BINDING SITE FOR RESIDUE SO4 D 262
32
DC5
SOFTWARE
ARG D:187 , TYR D:196 , ARG D:255 , ARG D:259 , HOH D:312
BINDING SITE FOR RESIDUE SO4 D 263
33
DC6
SOFTWARE
GLY B:170 , GOL B:268 , ARG D:175 , HOH D:268 , HOH D:323
BINDING SITE FOR RESIDUE SO4 D 264
34
DC7
SOFTWARE
SER D:63 , LEU D:64 , HOH D:530
BINDING SITE FOR RESIDUE SO4 D 266
35
DC8
SOFTWARE
ARG D:127 , HIS D:135 , GLU D:177 , HOH D:277 , HOH D:475 , HOH D:617
BINDING SITE FOR RESIDUE GOL D 267
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_HTH_30_3onqD01 (D:196-253)
1b: PFAM_HTH_30_3onqD02 (D:196-253)
1c: PFAM_HTH_30_3onqD03 (D:196-253)
1d: PFAM_HTH_30_3onqD04 (D:196-253)
View:
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Label:
Clans
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)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
HTH
(544)
Family
:
HTH_30
(1)
Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a)
(1)
1a
HTH_30-3onqD01
D:196-253
1b
HTH_30-3onqD02
D:196-253
1c
HTH_30-3onqD03
D:196-253
1d
HTH_30-3onqD04
D:196-253
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