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(-) Description

Title :  CRYSTAL STRUCTURE OF THE VIBRIO CHOLERAE SECRETED COLONIZATION FACTOR TCPF
 
Authors :  L. Craig, S. Kolappan, A. S. W. Yuen
Date :  09 Aug 10  (Deposition) - 20 Apr 11  (Release) - 25 May 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (12x)
Keywords :  Multidomain Protein, Immunoglobulin-Like (Ig-Like) Fold, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. J. Megli, A. S. Yuen, S. Kolappan, M. R. Richardson, M. N. Dharmasena S. J. Krebs, R. K. Taylor, L. Craig
Crystal Structure Of The Vibrio Cholerae Colonization Facto Tcpf And Identification Of A Functional Immunogenic Site.
J. Mol. Biol. V. 409 146 2011
PubMed-ID: 21440558  |  Reference-DOI: 10.1016/J.JMB.2011.03.027

(-) Compounds

Molecule 1 - TOXIN COREGULATED PILUS BIOSYNTHESIS PROTEIN F
    Chains: A
    Engineered: YES
    Expression System: VIBRIO CHOLERAE
    Expression System Taxid: 666
    Fragment: UNP RESIDUES 21-338
    Gene: TCPF, VC_0837
    Organism Scientific: VIBRIO CHOLERAE
    Organism Taxid: 666
    Synonym: TCP PILUS BIOSYNTHESIS PROTEIN TCPF

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (12x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3OC5)

(-) Sites  (0, 0)

(no "Site" information available for 3OC5)

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:34 -A:47

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Tyr A:29 -Pro A:30

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OC5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OC5)

(-) Exons   (0, 0)

(no "Exon" information available for 3OC5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:286
 aligned with TCPF_VIBCH | P0C6Q5 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:294
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334    
           TCPF_VIBCH    45 EHLRYPYLECIKIGMSRDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYLAQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNTPVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVNELSKHGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSNNLTGKKLYNVSTNDMHNGYKWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK 338
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains TcpF-3oc5A01 A:25-317                                                                                                                                                                                                                                                                                - Pfam domains
         Sec.struct. author .....hhhhhhhh..hhhhhhhhhh.......hhhhhhh...-----...hhhhhhhhhhh.hhhhhhhhhhhhh.......ee..hhhhhhhhhhhhhh...hhhhhhhh..eeeeeee..eeeeeee........ee....ee............eee.......................eeeeeeehhhhhh.........eeeeeee.............eeeee.....---...eeeeeee.........hhhhhh.....eeeeeee........ee....hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3oc5 A  25 EHLRYPYLECIKIGMSRDYLENCVKVSFPTSQDMFYDAYPST-----KTRTKEDFSARLLAGDYDSLQKLYIDFYLAQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNTPVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVNELSKHGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQP---LTGKKLYNVSTNDMHNGYKWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENFK 318
                                    34        44        54        64 |     |74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254    |  264       274       284       294       304       314    
                                                                    66    72                                                                                                                                                                                        259 263
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3OC5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OC5)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: no clan defined [family: TcpF] (2)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A   (TCPF_VIBCH | P0C6Q5)
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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    Tyr A:29 - Pro A:30   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TCPF_VIBCH | P0C6Q5: 3oc8

(-) Related Entries Specified in the PDB File

3oc8 CRYSTAL STRUCTURE ANALYSIS OF THE C-TERMINAL DOMAIN OF VIBRIO CHOLERAE SOLUBLE COLONIZATION FACTOR TCPF