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(-) Description

Title :  CRYSTAL STRUCTURE OF HPV16 L1 PENTAMER BOUND TO HEPARIN OLIGOSACCHARIDES
 
Authors :  X. S. Chen, J. Dasgupta
Date :  05 Aug 10  (Deposition) - 17 Nov 10  (Release) - 27 Apr 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Jelly Roll, Capsid Protein, Receptor Hspg, Virus Capsid, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Dasgupta, M. Bienkowska-Haba, M. E. Ortega, H. D. Patel, S. Bodevin D. Spillmann, B. Bishop, M. Sapp, X. S. Chen
Structural Basis Of Oligosaccharide Receptor Recognition By Human Papillomavirus.
J. Biol. Chem. V. 286 2617 2011
PubMed-ID: 21115492  |  Reference-DOI: 10.1074/JBC.M110.160184

(-) Compounds

Molecule 1 - LATE MAJOR CAPSID PROTEIN L1
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: XA90
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 12-394, 429-465
    Mutation: YES
    Organism Scientific: HUMAN PAPILLOMAVIRUS
    Organism Taxid: 10566

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 28)

Asymmetric/Biological Unit (2, 28)
No.NameCountTypeFull Name
1IDS14Ligand/Ion2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID
2JHM14Ligand/Ion2-DEOXY-6-O-SULFO-ALPHA-D-ARABINO-HEXOPYRANOSE

(-) Sites  (28, 28)

Asymmetric Unit (28, 28)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP C:199 , THR C:445 , IDS C:502 , IDS C:504BINDING SITE FOR RESIDUE JHM C 501
02AC2SOFTWARELYS C:64 , GLY C:198 , ASP C:199 , MET C:200 , SER C:227 , JHM C:501BINDING SITE FOR RESIDUE IDS C 502
03AC3SOFTWAREGLN C:196 , LYS C:443 , TYR C:444 , IDS C:504BINDING SITE FOR RESIDUE JHM C 503
04AC4SOFTWAREGLN C:196 , JHM C:501 , JHM C:503BINDING SITE FOR RESIDUE IDS C 504
05AC5SOFTWAREIDS B:506 , IDS B:508BINDING SITE FOR RESIDUE JHM B 505
06AC6SOFTWARELYS B:278 , ASN B:285 , JHM B:505BINDING SITE FOR RESIDUE IDS B 506
07AC7SOFTWARETHR A:358 , LYS A:361 , THR B:266 , IDS B:508BINDING SITE FOR RESIDUE JHM A 507
08AC8SOFTWAREJHM A:507 , JHM B:505BINDING SITE FOR RESIDUE IDS B 508
09AC9SOFTWAREPRO C:55 , IDS D:510BINDING SITE FOR RESIDUE JHM C 509
10BC1SOFTWAREJHM C:509 , ASN D:270 , ASP D:273 , LYS D:278 , JHM D:511BINDING SITE FOR RESIDUE IDS D 510
11BC2SOFTWAREALA D:284 , ASN D:285 , LEU D:286 , IDS D:510 , IDS D:512BINDING SITE FOR RESIDUE JHM D 511
12BC3SOFTWAREASN D:138 , ASN D:285 , LEU D:286 , JHM D:511BINDING SITE FOR RESIDUE IDS D 512
13BC4SOFTWAREPRO D:55 , IDS D:516 , ASN E:270 , IDS E:514BINDING SITE FOR RESIDUE JHM E 513
14BC5SOFTWAREASN E:270 , ASP E:273 , LYS E:278 , JHM E:513BINDING SITE FOR RESIDUE IDS E 514
15BC6SOFTWARELYS D:54 , ASN D:56 , IDS D:516BINDING SITE FOR RESIDUE JHM D 515
16BC7SOFTWAREPRO D:55 , ASN D:56 , JHM D:515 , JHM E:513BINDING SITE FOR RESIDUE IDS D 516
17BC8SOFTWAREIDS A:520 , IDS E:518BINDING SITE FOR RESIDUE JHM E 517
18BC9SOFTWAREPRO E:55 , ASN E:56 , JHM E:517BINDING SITE FOR RESIDUE IDS E 518
19CC1SOFTWARETHR A:266 , VAL A:267 , IDS A:520 , LYS E:361 , IDS E:522BINDING SITE FOR RESIDUE JHM A 519
20CC2SOFTWAREASN A:270 , JHM A:519 , JHM E:517BINDING SITE FOR RESIDUE IDS A 520
21CC3SOFTWARETHR E:358 , IDS E:522BINDING SITE FOR RESIDUE JHM E 521
22CC4SOFTWAREJHM A:519 , THR E:358 , JHM E:521BINDING SITE FOR RESIDUE IDS E 522
23CC5SOFTWAREIDS E:524 , IDS E:526BINDING SITE FOR RESIDUE JHM E 523
24CC6SOFTWARELYS E:59 , JHM E:523BINDING SITE FOR RESIDUE IDS E 524
25CC7SOFTWAREIDS E:526 , IDS E:528BINDING SITE FOR RESIDUE JHM E 525
26CC8SOFTWAREJHM E:523 , JHM E:525BINDING SITE FOR RESIDUE IDS E 526
27CC9SOFTWARELYS E:452 , IDS E:528BINDING SITE FOR RESIDUE JHM E 527
28DC1SOFTWAREASN E:450 , JHM E:525 , JHM E:527BINDING SITE FOR RESIDUE IDS E 528

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OAE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3OAE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OAE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OAE)

(-) Exons   (0, 0)

(no "Exon" information available for 3OAE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:421
 aligned with Q81007_9PAPI | Q81007 from UniProtKB/TrEMBL  Length:494

    Alignment length:455
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460     
         Q81007_9PAPI    11 KVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGL 465
               SCOP domains d3oaea_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh....................................................................................................................................................................................hhhhhh......hhhhhh......hhhhhhhh...............................hhhhh...hhhhhh......................................hhh.............................hhh.........................hhhhhhhhhhhhhhhhhhh.----------------------------------....................hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oae A  20 AVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWN----------------------------------EDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGL 474
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399   |     -         -         -       439       449       459       469     
                                                                                                                                                                                                                                                                                                                                                                                                                         403                                438                                    


Chain B from PDB  Type:PROTEIN  Length:421
 aligned with Q81007_9PAPI | Q81007 from UniProtKB/TrEMBL  Length:494

    Alignment length:455
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460     
         Q81007_9PAPI    11 KVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGL 465
               SCOP domains d3oaeb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh....................................................................................................................................................................................hhhhhh......hhhhhh......hhhhhhhh...............................hhhhh...hhhhhh......................................hhh.............................hhh.........................hhhhhhhhhhhhhhhhhhh.----------------------------------....................hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oae B  20 AVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWN----------------------------------EDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGL 474
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399   |     -         -         -       439       449       459       469     
                                                                                                                                                                                                                                                                                                                                                                                                                         403                                438                                    


Chain C from PDB  Type:PROTEIN  Length:421
 aligned with Q81007_9PAPI | Q81007 from UniProtKB/TrEMBL  Length:494

    Alignment length:455
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460     
         Q81007_9PAPI    11 KVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGL 465
               SCOP domains d3oaec_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh....................................................................................................................................................................................hhhhhh......hhhhhh......hhhhhhhh...............................hhhhh...hhhhhh......................................hhh.............................hhh.........................hhhhhhhhhhhhhhhhhhh.----------------------------------....................hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oae C  20 AVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWN----------------------------------EDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGL 474
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399   |     -         -         -       439       449       459       469     
                                                                                                                                                                                                                                                                                                                                                                                                                         403                                438                                    


Chain D from PDB  Type:PROTEIN  Length:421
 aligned with Q81007_9PAPI | Q81007 from UniProtKB/TrEMBL  Length:494

    Alignment length:455
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460     
         Q81007_9PAPI    11 KVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGL 465
               SCOP domains d3oaed_ D: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh....................................................................................................................................................................................hhhhhh......hhhhhh......hhhhhhhh...............................hhhhh...hhhhhh......................................hhh.............................hhh.........................hhhhhhhhhhhhhhhhhhh.----------------------------------....................hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oae D  20 AVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWN----------------------------------EDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGL 474
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399   |     -         -         -       439       449       459       469     
                                                                                                                                                                                                                                                                                                                                                                                                                         403                                438                                    


Chain E from PDB  Type:PROTEIN  Length:421
 aligned with Q81007_9PAPI | Q81007 from UniProtKB/TrEMBL  Length:494

    Alignment length:455
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460     
         Q81007_9PAPI    11 KVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGL 465
               SCOP domains d3oaee_ E: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -Late_protein_L1-3oaeE01 E:21-474                                                                                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (1)
           Pfam domains (2) -Late_protein_L1-3oaeE02 E:21-474                                                                                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (2)
           Pfam domains (3) -Late_protein_L1-3oaeE03 E:21-474                                                                                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (3)
           Pfam domains (4) -Late_protein_L1-3oaeE04 E:21-474                                                                                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (4)
           Pfam domains (5) -Late_protein_L1-3oaeE05 E:21-474                                                                                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (5)
         Sec.struct. author ...hhhhhh....................................................................................................................................................................................hhhhhh......hhhhhh......hhhhhhhh...............................hhhhh...hhhhhh......................................hhh.............................hhh.........................hhhhhhhhhhhhhhhhhhh.----------------------------------....................hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oae E  20 AVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWN----------------------------------EDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGL 474
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399   |     -         -         -       439       449       459       469     
                                                                                                                                                                                                                                                                                                                                                                                                                         403                                438
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 5)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OAE)

(-) Pfam Domains  (1, 5)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Late_protein_L1] (6)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E   (Q81007_9PAPI | Q81007)
molecular function
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0075509    endocytosis involved in viral entry into host cell    Any endocytosis that is involved in the uptake of a virus into a host cell.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0039620    T=7 icosahedral viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=7 symmetry. The T=7 capsid is composed of 12 pentameric and 60 hexameric capsomeres.
    GO:0042025    host cell nucleus    A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

 Visualization

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Asymmetric/Biological Unit
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 Related Entries

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        Q81007_9PAPI | Q81007: 2r5h

(-) Related Entries Specified in the PDB File

2r5h PENTAMER STRUCTURE OF MAJOR CAPSID PROTEIN L1 OF HUMAN PAPILLOMA VIRUS TYPE 16