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3OAE
Asym. Unit
Info
Asym.Unit (350 KB)
Biol.Unit 1 (341 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HPV16 L1 PENTAMER BOUND TO HEPARIN OLIGOSACCHARIDES
Authors
:
X. S. Chen, J. Dasgupta
Date
:
05 Aug 10 (Deposition) - 17 Nov 10 (Release) - 27 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Jelly Roll, Capsid Protein, Receptor Hspg, Virus Capsid, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Dasgupta, M. Bienkowska-Haba, M. E. Ortega, H. D. Patel, S. Bodevin D. Spillmann, B. Bishop, M. Sapp, X. S. Chen
Structural Basis Of Oligosaccharide Receptor Recognition By Human Papillomavirus.
J. Biol. Chem. V. 286 2617 2011
[
close entry info
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Hetero Components
(2, 28)
Info
All Hetero Components
1a: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSa)
1b: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSb)
1c: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSc)
1d: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSd)
1e: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSe)
1f: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSf)
1g: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSg)
1h: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSh)
1i: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSi)
1j: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSj)
1k: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSk)
1l: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSl)
1m: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSm)
1n: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSn)
2a: 2-DEOXY-6-O-SULFO-ALPHA-D-ARABINO-... (JHMa)
2b: 2-DEOXY-6-O-SULFO-ALPHA-D-ARABINO-... (JHMb)
2c: 2-DEOXY-6-O-SULFO-ALPHA-D-ARABINO-... (JHMc)
2d: 2-DEOXY-6-O-SULFO-ALPHA-D-ARABINO-... (JHMd)
2e: 2-DEOXY-6-O-SULFO-ALPHA-D-ARABINO-... (JHMe)
2f: 2-DEOXY-6-O-SULFO-ALPHA-D-ARABINO-... (JHMf)
2g: 2-DEOXY-6-O-SULFO-ALPHA-D-ARABINO-... (JHMg)
2h: 2-DEOXY-6-O-SULFO-ALPHA-D-ARABINO-... (JHMh)
2i: 2-DEOXY-6-O-SULFO-ALPHA-D-ARABINO-... (JHMi)
2j: 2-DEOXY-6-O-SULFO-ALPHA-D-ARABINO-... (JHMj)
2k: 2-DEOXY-6-O-SULFO-ALPHA-D-ARABINO-... (JHMk)
2l: 2-DEOXY-6-O-SULFO-ALPHA-D-ARABINO-... (JHMl)
2m: 2-DEOXY-6-O-SULFO-ALPHA-D-ARABINO-... (JHMm)
2n: 2-DEOXY-6-O-SULFO-ALPHA-D-ARABINO-... (JHMn)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IDS
14
Ligand/Ion
2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID
2
JHM
14
Ligand/Ion
2-DEOXY-6-O-SULFO-ALPHA-D-ARABINO-HEXOPYRANOSE
[
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Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP C:199 , THR C:445 , IDS C:502 , IDS C:504
BINDING SITE FOR RESIDUE JHM C 501
02
AC2
SOFTWARE
LYS C:64 , GLY C:198 , ASP C:199 , MET C:200 , SER C:227 , JHM C:501
BINDING SITE FOR RESIDUE IDS C 502
03
AC3
SOFTWARE
GLN C:196 , LYS C:443 , TYR C:444 , IDS C:504
BINDING SITE FOR RESIDUE JHM C 503
04
AC4
SOFTWARE
GLN C:196 , JHM C:501 , JHM C:503
BINDING SITE FOR RESIDUE IDS C 504
05
AC5
SOFTWARE
IDS B:506 , IDS B:508
BINDING SITE FOR RESIDUE JHM B 505
06
AC6
SOFTWARE
LYS B:278 , ASN B:285 , JHM B:505
BINDING SITE FOR RESIDUE IDS B 506
07
AC7
SOFTWARE
THR A:358 , LYS A:361 , THR B:266 , IDS B:508
BINDING SITE FOR RESIDUE JHM A 507
08
AC8
SOFTWARE
JHM A:507 , JHM B:505
BINDING SITE FOR RESIDUE IDS B 508
09
AC9
SOFTWARE
PRO C:55 , IDS D:510
BINDING SITE FOR RESIDUE JHM C 509
10
BC1
SOFTWARE
JHM C:509 , ASN D:270 , ASP D:273 , LYS D:278 , JHM D:511
BINDING SITE FOR RESIDUE IDS D 510
11
BC2
SOFTWARE
ALA D:284 , ASN D:285 , LEU D:286 , IDS D:510 , IDS D:512
BINDING SITE FOR RESIDUE JHM D 511
12
BC3
SOFTWARE
ASN D:138 , ASN D:285 , LEU D:286 , JHM D:511
BINDING SITE FOR RESIDUE IDS D 512
13
BC4
SOFTWARE
PRO D:55 , IDS D:516 , ASN E:270 , IDS E:514
BINDING SITE FOR RESIDUE JHM E 513
14
BC5
SOFTWARE
ASN E:270 , ASP E:273 , LYS E:278 , JHM E:513
BINDING SITE FOR RESIDUE IDS E 514
15
BC6
SOFTWARE
LYS D:54 , ASN D:56 , IDS D:516
BINDING SITE FOR RESIDUE JHM D 515
16
BC7
SOFTWARE
PRO D:55 , ASN D:56 , JHM D:515 , JHM E:513
BINDING SITE FOR RESIDUE IDS D 516
17
BC8
SOFTWARE
IDS A:520 , IDS E:518
BINDING SITE FOR RESIDUE JHM E 517
18
BC9
SOFTWARE
PRO E:55 , ASN E:56 , JHM E:517
BINDING SITE FOR RESIDUE IDS E 518
19
CC1
SOFTWARE
THR A:266 , VAL A:267 , IDS A:520 , LYS E:361 , IDS E:522
BINDING SITE FOR RESIDUE JHM A 519
20
CC2
SOFTWARE
ASN A:270 , JHM A:519 , JHM E:517
BINDING SITE FOR RESIDUE IDS A 520
21
CC3
SOFTWARE
THR E:358 , IDS E:522
BINDING SITE FOR RESIDUE JHM E 521
22
CC4
SOFTWARE
JHM A:519 , THR E:358 , JHM E:521
BINDING SITE FOR RESIDUE IDS E 522
23
CC5
SOFTWARE
IDS E:524 , IDS E:526
BINDING SITE FOR RESIDUE JHM E 523
24
CC6
SOFTWARE
LYS E:59 , JHM E:523
BINDING SITE FOR RESIDUE IDS E 524
25
CC7
SOFTWARE
IDS E:526 , IDS E:528
BINDING SITE FOR RESIDUE JHM E 525
26
CC8
SOFTWARE
JHM E:523 , JHM E:525
BINDING SITE FOR RESIDUE IDS E 526
27
CC9
SOFTWARE
LYS E:452 , IDS E:528
BINDING SITE FOR RESIDUE JHM E 527
28
DC1
SOFTWARE
ASN E:450 , JHM E:525 , JHM E:527
BINDING SITE FOR RESIDUE IDS E 528
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d3oaea_ (A:)
1b: SCOP_d3oaeb_ (B:)
1c: SCOP_d3oaec_ (C:)
1d: SCOP_d3oaed_ (D:)
1e: SCOP_d3oaee_ (E:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Nucleoplasmin-like/VP (viral coat and capsid proteins)
(278)
Superfamily
:
Group I dsDNA viruses
(30)
Family
:
Papovaviridae-like VP
(19)
Protein domain
:
automated matches
(12)
Human papillomavirus [TaxId: 10566]
(1)
1a
d3oaea_
A:
1b
d3oaeb_
B:
1c
d3oaec_
C:
1d
d3oaed_
D:
1e
d3oaee_
E:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(1, 5)
Info
all PFAM domains
1a: PFAM_Late_protein_L1_3oaeE01 (E:21-474)
1b: PFAM_Late_protein_L1_3oaeE02 (E:21-474)
1c: PFAM_Late_protein_L1_3oaeE03 (E:21-474)
1d: PFAM_Late_protein_L1_3oaeE04 (E:21-474)
1e: PFAM_Late_protein_L1_3oaeE05 (E:21-474)
View:
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Clans
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)
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Late_protein_L1]
(6)
Family
:
Late_protein_L1
(6)
Human papillomavirus
(1)
1a
Late_protein_L1-3oaeE01
E:21-474
1b
Late_protein_L1-3oaeE02
E:21-474
1c
Late_protein_L1-3oaeE03
E:21-474
1d
Late_protein_L1-3oaeE04
E:21-474
1e
Late_protein_L1-3oaeE05
E:21-474
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