3O6W - JenaLib

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Title :   CRYSTAL STRUCTURE OF MONOMERIC KLHXK1 IN CRYSTAL FORM VIII (OPEN STATE)

Authors :   E. B. Kuettner, K. Kettner, A. Keim, T. M. Kriegel, N. Strater

Date :   29 Jul 10 (Deposition) - 13 Oct 10 (Release) - 29 Dec 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.48

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Rnaseh-Like Fold, Hexokinase, Glycolysis, Glucose Repression, Atp Binding, Mig1 Binding, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. B. Kuettner, K. Kettner, A. Keim, D. I. Svergun, D. Volke, D. Singer, R. Hoffmann, E. C. Muller, A. Otto, T. M. Kriegel, N. Strater
Crystal Structure Of Hexokinase Klhxk1 Of Kluyveromyces Lactis: A Molecular Basis For Understanding The Control Of Yeast Hexokinase Functions Via Covalent Modification And Oligomerization.
J. Biol. Chem. V. 285 41019 2010
PubMed-ID: 20943665 | Reference-DOI: 10.1074/JBC.M110.185850
(for further references see the PDB file header)

Molecule 1 - HEXOKINASE
	Chains	:	A, B
	EC Number	:	2.7.1.1
	Engineered	:	YES
	Expression System	:	KLUYVEROMYCES LACTIS
	Expression System Plasmid	:	PTSRAG5
	Expression System Strain	:	JA6-DELTA-RAG5
	Expression System Taxid	:	28985
	Expression System Vector Type	:	PTS32X
	Gene	:	KLLA0D11352G, RAG5
	Organism Common	:	YEAST
	Organism Scientific	:	KLUYVEROMYCES LACTIS
	Organism Taxid	:	28985
	Strain	:	CBS2359/152

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 8)

No.	Name	Count	Type	Full Name
1	GOL	5	Ligand/Ion	GLYCEROL
2	PO4	3	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (2, 3)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 2 (2, 5)

No.	Name	Count	Type	Full Name
1	GOL	3	Ligand/Ion	GLYCEROL
2	PO4	2	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:209 , ASP A:210 , THR A:211 , GLY A:234 , VAL A:235 , ASN A:236 , HOH A:579	BINDING SITE FOR RESIDUE GOL A 486
2	AC2	SOFTWARE	PHE A:156 , TYR A:158 , ALA A:160 , GLN A:162 , HOH A:537 , HOH A:575 , HOH A:630 , HOH A:684 , HOH A:828	BINDING SITE FOR RESIDUE GOL A 487
3	AC3	SOFTWARE	GLY A:232 , THR A:233 , GLY A:417 , SER A:418	BINDING SITE FOR RESIDUE PO4 A 488
4	AC4	SOFTWARE	ASN B:209 , ASP B:210 , THR B:211 , GLY B:234 , VAL B:235 , ASN B:236	BINDING SITE FOR RESIDUE GOL B 486
5	AC5	SOFTWARE	THR A:372 , THR A:373 , VAL A:374 , ARG A:377	BINDING SITE FOR RESIDUE GOL B 487
6	AC6	SOFTWARE	HIS B:185 , ASP B:186 , HOH B:551	BINDING SITE FOR RESIDUE GOL B 488
7	AC7	SOFTWARE	THR B:233 , GLY B:417 , SER B:418	BINDING SITE FOR RESIDUE PO4 B 489
8	AC8	SOFTWARE	SER B:37 , SER B:38 , GLU B:39 , HOH B:702 , HOH B:772	BINDING SITE FOR RESIDUE PO4 B 490

(no "SS Bond" information available for 3O6W)

(no "Cis Peptide Bond" information available for 3O6W)

(no "SAP(SNP)/Variant" information available for 3O6W)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HEXOKINASE_2	PS51748	Hexokinase domain profile.	HXK_KLULA	21-468	2	A:21-468 B:21-468
2	HEXOKINASE_1	PS00378	Hexokinase domain signature.	HXK_KLULA	152-177	2	A:152-177 B:152-177

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HEXOKINASE_2	PS51748	Hexokinase domain profile.	HXK_KLULA	21-468	1	A:21-468 -
2	HEXOKINASE_1	PS00378	Hexokinase domain signature.	HXK_KLULA	152-177	1	A:152-177 -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HEXOKINASE_2	PS51748	Hexokinase domain profile.	HXK_KLULA	21-468	1	- B:21-468
2	HEXOKINASE_1	PS00378	Hexokinase domain signature.	HXK_KLULA	152-177	1	- B:152-177

(no "Exon" information available for 3O6W)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:467
 aligned with HXK_KLULA | P33284 from UniProtKB/Swiss-Prot  Length:485

    Alignment length:467
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       
            HXK_KLULA    19 VPANLMEQIHGLETLFTVSSEKMRSIVKHFISELDKGLSKKGGNIPMIPGWVVEYPTGKETGDFLALDLGGTNLRVVLVKLGGNHDFDTTQNKYRLPDHLRTGTSEQLWSFIAKCLKEFVDEWYPDGVSEPLPLGFTFSYPASQKKINSGVLQRWTKGFDIEGVEGHDVVPMLQEQIEKLNIPINVVALINDTTGTLVASLYTDPQTKMGIIIGTGVNGAYYDVVSGIEKLEGLLPEDIGPDSPMAINCEYGSFDNEHLVLPRTKYDVIIDEESPRPGQQAFEKMTSGYYLGEIMRLVLLDLYDSGFIFKDQDISKLKEAYVMDTSYPSKIEDDPFENLEDTDDLFKTNLNIETTVVERKLIRKLAELVGTRAARLTVCGVSAICDKRGYKTAHIAADGSVFNRYPGYKEKAAQALKDIYNWDVEKMEDHPIQLVAAEDGSGVGAAIIACLTQKRLAAGKSVGIKGE 485
               SCOP domains d3o6wa1 A:19-223 automated matches                                                                                                                                                                           d3o6wa2 A:224-485 automated matches                                                                                                                                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh........ee...........eeeeeeeee...eeeeeeeeee....eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeee....ee.......ee...............hhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhh..eeeeeee...eeeeeeee.hhhhhhh...........eeeee.hhhhh.........hhhhhhhhhhh.....hhhhhhhh..hhhhhhhhhhhhhhhh........hhhhhh.....hhhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeehhhhhhh.hhhhhhhhhhhhhhh....hhhhh.eeeee.....hhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --HEXOKINASE_2  PDB: A:21-468 UniProt: 21-468                                                                                                                                                                                                                                                                                                                                                                                                                     ----------------- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------HEXOKINASE_1              -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o6w A  19 VPANLMEQIHGLETLFTVSSEKMRSIVKHFISELDKGLSKKGGNIPMIPGWVVEYPTGKETGDFLALDLGGTNLRVVLVKLGGNHDFDTTQNKYRLPDHLRTGTSEQLWSFIAKCLKEFVDEWYPDGVSEPLPLGFTFSYPASQKKINSGVLQRWTKGFDIEGVEGHDVVPMLQEQIEKLNIPINVVALINDTTGTLVASLYTDPQTKMGIIIGTGVNGAYYDVVSGIEKLEGLLPEDIGPDSPMAINCEYGSFDNEHLVLPRTKYDVIIDEESPRPGQQAFEKMTSGYYLGEIMRLVLLDLYDSGFIFKDQDISKLKEAYVMDTSYPSKIEDDPFENLEDTDDLFKTNLNIETTVVERKLIRKLAELVGTRAARLTVCGVSAICDKRGYKTAHIAADGSVFNRYPGYKEKAAQALKDIYNWDVEKMEDHPIQLVAAEDGSGVGAAIIACLTQKRLAAGKSVGIKGE 485
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478

Chain B from PDB  Type:PROTEIN  Length:466
 aligned with HXK_KLULA | P33284 from UniProtKB/Swiss-Prot  Length:485

    Alignment length:466
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479      
            HXK_KLULA    20 PANLMEQIHGLETLFTVSSEKMRSIVKHFISELDKGLSKKGGNIPMIPGWVVEYPTGKETGDFLALDLGGTNLRVVLVKLGGNHDFDTTQNKYRLPDHLRTGTSEQLWSFIAKCLKEFVDEWYPDGVSEPLPLGFTFSYPASQKKINSGVLQRWTKGFDIEGVEGHDVVPMLQEQIEKLNIPINVVALINDTTGTLVASLYTDPQTKMGIIIGTGVNGAYYDVVSGIEKLEGLLPEDIGPDSPMAINCEYGSFDNEHLVLPRTKYDVIIDEESPRPGQQAFEKMTSGYYLGEIMRLVLLDLYDSGFIFKDQDISKLKEAYVMDTSYPSKIEDDPFENLEDTDDLFKTNLNIETTVVERKLIRKLAELVGTRAARLTVCGVSAICDKRGYKTAHIAADGSVFNRYPGYKEKAAQALKDIYNWDVEKMEDHPIQLVAAEDGSGVGAAIIACLTQKRLAAGKSVGIKGE 485
               SCOP domains d3o6wb1 B:20-223 automated matches                                                                                                                                                                          d3o6wb2 B:224-485 automated matches                                                                                                                                                                                                                                    SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -Hexokinase_1-3o6wB01 B:21-222                                                                                                                                                                             -Hexokinase_2-3o6wB03 B:224-472                                                                                                                                                                                                                           ------------- Pfam domains (1)
           Pfam domains (2) -Hexokinase_1-3o6wB02 B:21-222                                                                                                                                                                             -Hexokinase_2-3o6wB04 B:224-472                                                                                                                                                                                                                           ------------- Pfam domains (2)
         Sec.struct. author hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh........ee...........eeeeeeeee...eeeeeeeeee....eeeeeeeee.hhhhhh.hhhhhhhhhhhhhhhhhhhhh.......eeeeee....ee.......ee...............hhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhh..eeeeeee...eeeeeeee.hhhhhhh...........eeeee.hhhhh.........hhhhhhhhhh......hhhhhhhh..hhhhhhhhhhhhhhhh........hhhhhh.....hhhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeehhhhhhh.hhhhhhhhhhhhhhh....hhhhh.eeeee.....hhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -HEXOKINASE_2  PDB: B:21-468 UniProt: 21-468                                                                                                                                                                                                                                                                                                                                                                                                                     ----------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------HEXOKINASE_1              -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o6w B  20 PANLMEQIHGLETLFTVSSEKMRSIVKHFISELDKGLSKKGGNIPMIPGWVVEYPTGKETGDFLALDLGGTNLRVVLVKLGGNHDFDTTQNKYRLPDHLRTGTSEQLWSFIAKCLKEFVDEWYPDGVSEPLPLGFTFSYPASQKKINSGVLQRWTKGFDIEGVEGHDVVPMLQEQIEKLNIPINVVALINDTTGTLVASLYTDPQTKMGIIIGTGVNGAYYDVVSGIEKLEGLLPEDIGPDSPMAINCEYGSFDNEHLVLPRTKYDVIIDEESPRPGQQAFEKMTSGYYLGEIMRLVLLDLYDSGFIFKDQDISKLKEAYVMDTSYPSKIEDDPFENLEDTDDLFKTNLNIETTVVERKLIRKLAELVGTRAARLTVCGVSAICDKRGYKTAHIAADGSVFNRYPGYKEKAAQALKDIYNWDVEKMEDHPIQLVAAEDGSGVGAAIIACLTQKRLAAGKSVGIKGE 485
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Ribonuclease H-like motif (1424)

Superfamily: Actin-like ATPase domain (426)

Family: automated matches (111)

Protein domain: automated matches (111)

Milk yeast (Kluyveromyces lactis) [TaxId: 28985] (8)

1a	d3o6wa1	A:19-223
1b	d3o6wa2	A:224-485
1c	d3o6wb1	B:20-223
1d	d3o6wb2	B:224-485

(no "CATH Domain" information available for 3O6W)

Asymmetric Unit(hide GO term definitions)

Chain A,B (HXK_KLULA | P33284)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0005536	glucose binding	Interacting selectively and non-covalently with the D- or L-enantiomer of glucose.
	GO:0004396	hexokinase activity	Catalysis of the reaction: ATP + D-hexose = ADP + D-hexose 6-phosphate.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016773	phosphotransferase activity, alcohol group as acceptor	Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor).
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0046835	carbohydrate phosphorylation	The process of introducing a phosphate group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y.
	GO:0001678	cellular glucose homeostasis	A cellular homeostatic process involved in the maintenance of an internal steady state of glucose within a cell or between a cell and its external environment.
	GO:0006096	glycolytic process	The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
	GO:0019318	hexose metabolic process	The chemical reactions and pathways involving a hexose, any monosaccharide with a chain of six carbon atoms in the molecule.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
cellular component
	GO:0005623	cell	The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.

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	3o6w
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	HXK_KLULA \| P33284	:	3o08 3o1b 3o1w 3o4w 3o5b 3o80 3o8m 4jax

3o08	CRYSTAL FORM I OF KLHXK1 (DIMER)
3o1b	CRYSTAL FORM II OF KLHXK1 (DIMER)
3o1w	CRYSTAL FORM III OF KLHXK1 (DIMER)
3o4w	CRYSTAL FORM IV OF KLHXK1 (DIMER)
3o5b	CRYSTAL FORM VII OF KLHXK1 (DIMER) WITH GLUCOSE BOUND
3o80	CRYSTAL FORM IX OF KLHXK1 (MONOMER)
3o8m	CRYSTAL FORM XI OF KLHXK1 (MONONER) WITH GLUCOSE BOUND

Description

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Ligands, Modified Residues, Ions (2, 8)

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Gene Ontology (16, 16)

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