3NY2 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Biological Unit 7 (Jmol Viewer)

Biological Unit 8 (Jmol Viewer)

Title :   STRUCTURE OF THE UBR-BOX OF UBR2 UBIQUITIN LIGASE

Authors :   E. Matta-Camacho, G. Kozlov, F. Li, K. Gehring

Date :   14 Jul 10 (Deposition) - 11 Aug 10 (Release) - 20 Oct 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.61

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)
Biol. Unit 7: G  (1x)
Biol. Unit 8: H  (1x)

Keywords :   Zinc Finger-Like, Ubiquitin Ligase, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Matta-Camacho, G. Kozlov, F. F. Li, K. Gehring
Structural Basis Of Substrate Recognition And Specificity I The N-End Rule Pathway.
Nat. Struct. Mol. Biol. V. 17 1182 2010
PubMed-ID: 20835242 | Reference-DOI: 10.1038/NSMB.1894

Molecule 1 - E3 UBIQUITIN-PROTEIN LIGASE UBR2
	Chains	:	A, B, C, D, E, F, G, H
	EC Number	:	6.3.2.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PGEX-6P-1
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Fragment	:	UBR-BOX
	Gene	:	UBR2, C6ORF133, KIAA0349
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	N-RECOGNIN-2, UBIQUITIN-PROTEIN LIGASE E3-ALPHA-2, UBIQUITIN-PROTEIN LIGASE E3-ALPHA-II

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F
Biological Unit 7 (1x)	:							G
Biological Unit 8 (1x)	:								H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 24)

No.	Name	Count	Type	Full Name
1	ZN	24	Ligand/Ion	ZINC ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 4 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 5 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 6 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 7 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 8 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (24, 24)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	CYS A:99 , CYS A:124 , CYS A:127 , CYS A:149	BINDING SITE FOR RESIDUE ZN A 1
02	AC2	SOFTWARE	CYS A:127 , CYS A:151 , CYS A:163 , HIS A:166	BINDING SITE FOR RESIDUE ZN A 2
03	AC3	SOFTWARE	CYS A:112 , CYS A:115 , HIS A:133 , HIS A:136	BINDING SITE FOR RESIDUE ZN A 3
04	AC4	SOFTWARE	CYS B:99 , CYS B:124 , CYS B:127 , CYS B:149	BINDING SITE FOR RESIDUE ZN B 4
05	AC5	SOFTWARE	CYS B:127 , CYS B:151 , CYS B:163 , HIS B:166	BINDING SITE FOR RESIDUE ZN B 5
06	AC6	SOFTWARE	CYS B:112 , CYS B:115 , HIS B:133 , HIS B:136	BINDING SITE FOR RESIDUE ZN B 6
07	AC7	SOFTWARE	CYS C:99 , CYS C:124 , CYS C:127 , CYS C:149	BINDING SITE FOR RESIDUE ZN C 7
08	AC8	SOFTWARE	CYS C:127 , CYS C:151 , CYS C:163 , HIS C:166	BINDING SITE FOR RESIDUE ZN C 8
09	AC9	SOFTWARE	CYS C:112 , CYS C:115 , HIS C:133 , HIS C:136	BINDING SITE FOR RESIDUE ZN C 9
10	BC1	SOFTWARE	CYS D:99 , CYS D:124 , CYS D:127 , CYS D:149	BINDING SITE FOR RESIDUE ZN D 10
11	BC2	SOFTWARE	CYS D:127 , CYS D:151 , CYS D:163 , HIS D:166	BINDING SITE FOR RESIDUE ZN D 11
12	BC3	SOFTWARE	CYS D:112 , CYS D:115 , HIS D:133 , HIS D:136	BINDING SITE FOR RESIDUE ZN D 12
13	BC4	SOFTWARE	CYS E:99 , CYS E:124 , CYS E:127 , CYS E:149	BINDING SITE FOR RESIDUE ZN E 13
14	BC5	SOFTWARE	CYS E:127 , CYS E:151 , CYS E:163 , HIS E:166	BINDING SITE FOR RESIDUE ZN E 14
15	BC6	SOFTWARE	CYS E:112 , CYS E:115 , HIS E:133 , HIS E:136	BINDING SITE FOR RESIDUE ZN E 15
16	BC7	SOFTWARE	CYS F:99 , CYS F:124 , CYS F:127 , CYS F:149	BINDING SITE FOR RESIDUE ZN F 16
17	BC8	SOFTWARE	CYS F:127 , CYS F:151 , CYS F:163 , HIS F:166	BINDING SITE FOR RESIDUE ZN F 17
18	BC9	SOFTWARE	CYS F:112 , CYS F:115 , HIS F:133 , HIS F:136	BINDING SITE FOR RESIDUE ZN F 18
19	CC1	SOFTWARE	CYS G:99 , CYS G:124 , CYS G:127 , CYS G:149	BINDING SITE FOR RESIDUE ZN G 19
20	CC2	SOFTWARE	CYS G:127 , CYS G:151 , CYS G:163 , HIS G:166	BINDING SITE FOR RESIDUE ZN G 20
21	CC3	SOFTWARE	CYS G:112 , CYS G:115 , HIS G:133 , HIS G:136	BINDING SITE FOR RESIDUE ZN G 21
22	CC4	SOFTWARE	CYS H:99 , CYS H:124 , CYS H:127 , CYS H:149	BINDING SITE FOR RESIDUE ZN H 22
23	CC5	SOFTWARE	CYS H:127 , CYS H:151 , CYS H:163 , HIS H:166	BINDING SITE FOR RESIDUE ZN H 23
24	CC6	SOFTWARE	CYS H:112 , CYS H:115 , HIS H:133 , HIS H:136	BINDING SITE FOR RESIDUE ZN H 24

(no "SS Bond" information available for 3NY2)

(no "Cis Peptide Bond" information available for 3NY2)

(no "SAP(SNP)/Variant" information available for 3NY2)

Asymmetric Unit (1, 7)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZF_UBR	PS51157	Zinc finger UBR-type profile.	UBR2_HUMAN	97-168	7	A:98-167 B:98-167 C:98-167 D:98-167 F:98-167 G:98-167 H:98-167

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZF_UBR	PS51157	Zinc finger UBR-type profile.	UBR2_HUMAN	97-168	1	A:98-167 - - - - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZF_UBR	PS51157	Zinc finger UBR-type profile.	UBR2_HUMAN	97-168	1	- B:98-167 - - - - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZF_UBR	PS51157	Zinc finger UBR-type profile.	UBR2_HUMAN	97-168	1	- - C:98-167 - - - -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZF_UBR	PS51157	Zinc finger UBR-type profile.	UBR2_HUMAN	97-168	1	- - - D:98-167 - - -

Biological Unit 5 (, 0)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZF_UBR	PS51157	Zinc finger UBR-type profile.	UBR2_HUMAN	97-168	0	- - - - - - -

Biological Unit 6 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZF_UBR	PS51157	Zinc finger UBR-type profile.	UBR2_HUMAN	97-168	1	- - - - F:98-167 - -

Biological Unit 7 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZF_UBR	PS51157	Zinc finger UBR-type profile.	UBR2_HUMAN	97-168	1	- - - - - G:98-167 -

Biological Unit 8 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZF_UBR	PS51157	Zinc finger UBR-type profile.	UBR2_HUMAN	97-168	1	- - - - - - H:98-167

(no "Exon" information available for 3NY2)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:72
 aligned with UBR2_HUMAN | Q8IWV8 from UniProtKB/Swiss-Prot  Length:1755

    Alignment length:72
                                   105       115       125       135       145       155       165  
           UBR2_HUMAN    96 SHLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE 167
               SCOP domains ------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............eeeee...........hhhhhhhhhhhhh.eeeee......................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -ZF_UBR  PDB: A:98-167 UniProt: 97-168                                   PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                 3ny2 A  96 GSLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE 167
                                   105       115       125       135       145       155       165

Chain B from PDB  Type:PROTEIN  Length:72
 aligned with UBR2_HUMAN | Q8IWV8 from UniProtKB/Swiss-Prot  Length:1755

    Alignment length:72
                                   105       115       125       135       145       155       165  
           UBR2_HUMAN    96 SHLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE 167
               SCOP domains ------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............eeeee...........hhhhhhhhhhhhh.eeeee..........hhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -ZF_UBR  PDB: B:98-167 UniProt: 97-168                                   PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                 3ny2 B  96 GSLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE 167
                                   105       115       125       135       145       155       165

Chain C from PDB  Type:PROTEIN  Length:71
 aligned with UBR2_HUMAN | Q8IWV8 from UniProtKB/Swiss-Prot  Length:1755

    Alignment length:71
                                   106       116       126       136       146       156       166 
           UBR2_HUMAN    97 HLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE 167
               SCOP domains ----------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee...........hhhhhhhhhhhhh.eeeee..........hhhhh.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ZF_UBR  PDB: C:98-167 UniProt: 97-168                                   PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 3ny2 C  97 SLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE 167
                                   106       116       126       136       146       156       166

Chain D from PDB  Type:PROTEIN  Length:73
 aligned with UBR2_HUMAN | Q8IWV8 from UniProtKB/Swiss-Prot  Length:1755

    Alignment length:98
                                    79        89        99       109       119       129       139       149       159        
           UBR2_HUMAN    70 LGPMEWYLCGEDPAFGFPKLEQANKPSHLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE 167
               SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..-------------------------...........eeeee...........hhhhhhhhhhhhh.eeeee..........hhhhh.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------ZF_UBR  PDB: D:98-167 UniProt: 97-168                                   PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 3ny2 D  95 LG-------------------------SLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE 167
                             |       -         -       |99       109       119       129       139       149       159        
                            96                        97

Chain E from PDB  Type:PROTEIN  Length:70
 aligned with UBR2_HUMAN | Q8IWV8 from UniProtKB/Swiss-Prot  Length:1755

    Alignment length:70
                                   107       117       127       137       147       157       167
           UBR2_HUMAN    98 LCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE 167
               SCOP domains ---------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeee...........hhhhhhhhhhhhh.eeeee..........hhhhh.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ZF_UBR  PDB: - UniProt: 97-168                                         PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 3ny2 E  98 LCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE 167
                                   107       117       127       137       147       157       167

Chain F from PDB  Type:PROTEIN  Length:72
 aligned with UBR2_HUMAN | Q8IWV8 from UniProtKB/Swiss-Prot  Length:1755

    Alignment length:72
                                   105       115       125       135       145       155       165  
           UBR2_HUMAN    96 SHLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE 167
               SCOP domains ------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............eeeee...........hhhhhhhhhhhhh.eeeee..........hhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -ZF_UBR  PDB: F:98-167 UniProt: 97-168                                   PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                 3ny2 F  96 GSLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE 167
                                   105       115       125       135       145       155       165

Chain G from PDB  Type:PROTEIN  Length:73
 aligned with UBR2_HUMAN | Q8IWV8 from UniProtKB/Swiss-Prot  Length:1755

    Alignment length:98
                                    79        89        99       109       119       129       139       149       159        
           UBR2_HUMAN    70 LGPMEWYLCGEDPAFGFPKLEQANKPSHLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE 167
               SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..-------------------------...........eeeee...........hhhhhhhhhhhhh.eeeee..........hhhhh.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------ZF_UBR  PDB: G:98-167 UniProt: 97-168                                   PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 3ny2 G  95 LG-------------------------SLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE 167
                             |       -         -       |99       109       119       129       139       149       159        
                            96                        97

Chain H from PDB  Type:PROTEIN  Length:72
 aligned with UBR2_HUMAN | Q8IWV8 from UniProtKB/Swiss-Prot  Length:1755

    Alignment length:72
                                   105       115       125       135       145       155       165  
           UBR2_HUMAN    96 SHLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE 167
               SCOP domains ------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
           Pfam domains (1) --zf-UBR-3ny2H01 H:98-167                                                Pfam domains (1)
           Pfam domains (2) --zf-UBR-3ny2H02 H:98-167                                                Pfam domains (2)
           Pfam domains (3) --zf-UBR-3ny2H03 H:98-167                                                Pfam domains (3)
           Pfam domains (4) --zf-UBR-3ny2H04 H:98-167                                                Pfam domains (4)
           Pfam domains (5) --zf-UBR-3ny2H05 H:98-167                                                Pfam domains (5)
           Pfam domains (6) --zf-UBR-3ny2H06 H:98-167                                                Pfam domains (6)
           Pfam domains (7) --zf-UBR-3ny2H07 H:98-167                                                Pfam domains (7)
           Pfam domains (8) --zf-UBR-3ny2H08 H:98-167                                                Pfam domains (8)
         Sec.struct. author ............eeeee...........hhhhhhhhhhhhh.eeeee..........hhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -ZF_UBR  PDB: H:98-167 UniProt: 97-168                                   PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                 3ny2 H  96 GSLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE 167
                                   105       115       125       135       145       155       165

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3NY2)

(no "CATH Domain" information available for 3NY2)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: zf-UBR] (12)

Family: zf-UBR (12)

Homo sapiens (Human) (3)

1a	zf-UBR-3ny2H01	H:98-167
1b	zf-UBR-3ny2H02	H:98-167
1c	zf-UBR-3ny2H03	H:98-167
1d	zf-UBR-3ny2H04	H:98-167
1e	zf-UBR-3ny2H05	H:98-167
1f	zf-UBR-3ny2H06	H:98-167
1g	zf-UBR-3ny2H07	H:98-167
1h	zf-UBR-3ny2H08	H:98-167

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H (UBR2_HUMAN | Q8IWV8)

molecular function
	GO:0070728	leucine binding	Interacting selectively and non-covalently with 2-amino-4-methylpentanoic acid.
	GO:0016874	ligase activity	Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0061630	ubiquitin protein ligase activity	Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues.
	GO:0004842	ubiquitin-protein transferase activity	Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0071233	cellular response to leucine	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a leucine stimulus.
	GO:0006342	chromatin silencing	Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin.
	GO:0033522	histone H2A ubiquitination	The modification of histone H2A by addition of one or more ubiquitin groups.
	GO:0007141	male meiosis I	A cell cycle process comprising the steps by which a cell progresses through male meiosis I, the first meiotic division in the male germline.
	GO:0032007	negative regulation of TOR signaling	Any process that stops, prevents, or reduces the frequency, rate or extent of TOR signaling.
	GO:0030163	protein catabolic process	The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
	GO:0000209	protein polyubiquitination	Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain.
	GO:0016567	protein ubiquitination	The process in which one or more ubiquitin groups are added to a protein.
	GO:0007283	spermatogenesis	The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
	GO:0006511	ubiquitin-dependent protein catabolic process	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
	GO:0071596	ubiquitin-dependent protein catabolic process via the N-end rule pathway	The chemical reactions and pathways resulting in the breakdown of a protein or peptide covalently tagged with ubiquitin, via the N-end rule pathway. In the N-end rule pathway, destabilizing N-terminal residues (N-degrons) in substrates are recognized by E3 ligases (N-recognins), whereupon the substrates are linked to ubiquitin and then delivered to the proteasome for degradation.
cellular component
	GO:0000785	chromatin	The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
	GO:0000151	ubiquitin ligase complex	A protein complex that includes a ubiquitin-protein ligase and enables ubiquitin protein ligase activity. The complex also contains other proteins that may confer substrate specificity on the complex.

Asymmetric Unit
	Complete Structure
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	3ny2
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	6.3.2.-
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UniProtKB/Swiss-Prot
	UBR2_HUMAN \| Q8IWV8	:	3ny3 5tda 5tdb 5tdd 5um3

3ny1	STRUCTURE OF THE UBR-BOX OF THE UBR1 UBIQUITIN LIGASE
3ny3	STRUCTURE OF THE UBR-BOX OF UBR2 IN COMPLEX WITH N-RECOGNIN

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 24)

Sites (24, 24)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 7)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (0, 0)

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Pfam Domains (1, 8)

Gene Ontology (25, 25)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File