3NJO - JenaLib

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Title :   X-RAY CRYSTAL STRUCTURE OF THE PYR1-PYRABACTIN A COMPLEX

Authors :   E. S. Burgie, C. A. Bingman, G. N. Phillips Jr. , F. C. Peterson, B. F. Vol S. R. Cutler, D. R. Jensen, Center For Eukaryotic Structural Geno (Cesg)

Date :   17 Jun 10 (Deposition) - 18 Aug 10 (Release) - 15 Sep 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.47

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C  (2x)

Keywords :   Start, Aba, Pyr/Pyl/Rcar, Plant Hormone, Structural Genomics, Protein Structure Initiative, Psi, Center For Eukaryotic Structural Genomics, Cesg, Hormone Receptor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. C. Peterson, E. S. Burgie, S. Y. Park, D. R. Jensen, J. J. Weiner, C. A. Bingman, C. E. Chang, S. R. Cutler, G. N. Phillips, B. F. Volkman
Structural Basis For Selective Activation Of Aba Receptors.
Nat. Struct. Mol. Biol. V. 17 1109 2010
PubMed-ID: 20729860 | Reference-DOI: 10.1038/NSMB.1898

Molecule 1 - ABSCISIC ACID RECEPTOR PYR1
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	ABIP6, AT4G17870, PYR1, RCAR11, T6K21.50
	Mutation	:	YES
	Organism Common	:	THALE-CRESS
	Organism Scientific	:	ARABIDOPSIS THALIANA
	Organism Taxid	:	3702
	Strain	:	COLUMBIA
	Synonym	:	PROTEIN PYRABACTIN RESISTANCE 1, ABI1-BINDING PROTEIN 6, REGULATORY COMPONENTS OF ABA RECEPTOR 11

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 7)

No.	Name	Count	Type	Full Name
1	CL	1	Ligand/Ion	CHLORIDE ION
2	NA	1	Ligand/Ion	SODIUM ION
3	P2M	1	Ligand/Ion	N-(PYRIDIN-2-YLMETHYL)NAPHTHALENE-1-SULFONAMIDE
4	PYV	2	Ligand/Ion	4-BROMO-N-(PYRIDIN-2-YLMETHYL)NAPHTHALENE-1-SULFONAMIDE
5	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 3)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	NA	-1	Ligand/Ion	SODIUM ION
3	P2M	1	Ligand/Ion	N-(PYRIDIN-2-YLMETHYL)NAPHTHALENE-1-SULFONAMIDE
4	PYV	1	Ligand/Ion	4-BROMO-N-(PYRIDIN-2-YLMETHYL)NAPHTHALENE-1-SULFONAMIDE
5	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	NA	-1	Ligand/Ion	SODIUM ION
3	P2M	-1	Ligand/Ion	N-(PYRIDIN-2-YLMETHYL)NAPHTHALENE-1-SULFONAMIDE
4	PYV	2	Ligand/Ion	4-BROMO-N-(PYRIDIN-2-YLMETHYL)NAPHTHALENE-1-SULFONAMIDE
5	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:59 , HIS A:60 , PHE A:61 , LEU A:87 , SER A:92 , GLU A:94 , TYR A:120 , VAL A:163 , HOH A:216 , HOH A:218	BINDING SITE FOR RESIDUE PYV A 300
2	AC2	SOFTWARE	LYS A:59 , HIS A:60 , LYS A:170 , HOH A:206 , GLY B:150 , ASN B:151 , SER B:152	BINDING SITE FOR RESIDUE SO4 A 192
3	AC3	SOFTWARE	SER A:85 , GLY A:86 , SER B:88 , HOH B:202	BINDING SITE FOR RESIDUE NA A 193
4	AC4	SOFTWARE	LYS B:59 , ILE B:62 , LEU B:87 , SER B:92 , GLU B:94 , TYR B:120 , VAL B:163	BINDING SITE FOR RESIDUE P2M B 300
5	AC5	SOFTWARE	HIS B:60	BINDING SITE FOR RESIDUE CL B 192
6	AC6	SOFTWARE	ILE C:62 , VAL C:81 , LEU C:87 , SER C:92 , GLU C:94 , LEU C:117 , PHE C:159 , VAL C:163 , HOH C:219 , HOH C:222 , HOH C:223	BINDING SITE FOR RESIDUE PYV C 300
7	AC7	SOFTWARE	HIS C:60 , LYS C:170	BINDING SITE FOR RESIDUE SO4 C 192

(no "SS Bond" information available for 3NJO)

(no "Cis Peptide Bond" information available for 3NJO)

(no "SAP(SNP)/Variant" information available for 3NJO)

(no "PROSITE Motif" information available for 3NJO)

(no "Exon" information available for 3NJO)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:169
 aligned with PYR1_ARATH | O49686 from UniProtKB/Swiss-Prot  Length:191

    Alignment length:175
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175     
           PYR1_ARATH     6 TPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEAMAR 180
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.......eeeeeeeeee..hhhhhhhhhh...hhhhh...eeeee...........eeeeee.......eeeeeeeeee....eeeeeeeee.......eeeeeeeeee....eeeeeeeeeeee..------hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3njo A   6 TPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTRDVIVISGLSANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFEKENRIWTVVLESYVVDMP------DTRMFADTVVKLNLQKLATVAEAMAR 180
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145  |    155       165       175     
                                                                                                                                                                        148    155

Chain B from PDB  Type:PROTEIN  Length:177
 aligned with PYR1_ARATH | O49686 from UniProtKB/Swiss-Prot  Length:191

    Alignment length:177
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       
           PYR1_ARATH     4 ELTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEAMAR 180
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh.......eeeeeeeeee..hhhhhhhhhhh..hhhhh...eeeee...........eeeeee.......eeeeeeeeee....eeeeeeee........eeeeeeeeeee..eeeeeeeeeeeee....hhhhh..hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3njo B   4 ELTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTRDVIVISGLSANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEAMAR 180
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173

Chain C from PDB  Type:PROTEIN  Length:171
 aligned with PYR1_ARATH | O49686 from UniProtKB/Swiss-Prot  Length:191

    Alignment length:178
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172        
           PYR1_ARATH     3 SELTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEAMAR 180
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------------------------Polyketide_cyc-3njoC01 C:38-172                                                                                                        -------- Pfam domains (1)
           Pfam domains (2) -----------------------------------Polyketide_cyc-3njoC02 C:38-172                                                                                                        -------- Pfam domains (2)
           Pfam domains (3) -----------------------------------Polyketide_cyc-3njoC03 C:38-172                                                                                                        -------- Pfam domains (3)
         Sec.struct. author ...hhhhhhhhhhhhhhhh.......eeeeeeeeee..hhhhhhhhhh...hhhhh...eeeee...........eeeeee.......eeeeeeeeee....eeeeeeeee.......eeeeeeeeeee..eeeeeeeeeeeee.-------hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3njo C   3 SELTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTRDVIVISGLSANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFEKENRIWTVVLESYVVDM-------DTRMFADTVVKLNLQKLATVAEAMAR 180
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142    |    -  |    162       172        
                                                                                                                                                                          147     155

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3NJO)

(no "CATH Domain" information available for 3NJO)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Bet_V_1_like (93)

Family: Polyketide_cyc (8)

Arabidopsis thaliana (Mouse-ear cress) (3)

1a	Polyketide_cyc-3njoC01	C:38-172
1b	Polyketide_cyc-3njoC02	C:38-172
1c	Polyketide_cyc-3njoC03	C:38-172

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (PYR1_ARATH | O49686)

molecular function
	GO:0010427	abscisic acid binding	Interacting selectively and non-covalently with abscisic acid, plant hormones that regulate aspects of plant growth.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
	GO:0004864	protein phosphatase inhibitor activity	Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from phosphorylated proteins.
	GO:0004872	receptor activity	Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
biological process
	GO:0009738	abscisic acid-activated signaling pathway	A series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor, and ending with modulation of a cellular process, e.g. transcription.
	GO:0043086	negative regulation of catalytic activity	Any process that stops or reduces the activity of an enzyme.
	GO:0080163	regulation of protein serine/threonine phosphatase activity	Any process that modulates the frequency, rate or extent of protein serine/threonine phosphatase activity: catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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(no "Cis Peptide Bonds" information available for 3njo)

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	3njo
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	PYR1_ARATH \| O49686	:	3k3k 3k90 3qn1 3wg8 3zvu 4wvo

3nj0	X-RAY CRYSTAL STRUCTURE OF THE PY12-PYRABACTIN A COMPLEX
3nj1	X-RAY CRYSTAL STRUCTURE OF THE PY12(V114I)-PYRABACTIN A COMPLEX RELATED ID: GO.20814 RELATED DB: TARGETDB

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 7)

Sites (7, 7)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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SCOP Domains (0, 0)

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Pfam Domains (1, 3)

Gene Ontology (13, 13)

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