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(-) Description

Title :  AN ENGINEERED PYR1 MANDIPROPAMID RECEPTOR IN COMPLEX WITH MANDIPROPAMID AND HAB1
 
Authors :  F. C. Peterson, B. F. Volkman, S. R. Cutler
Date :  06 Nov 14  (Deposition) - 11 Feb 15  (Release) - 29 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Pyr/Pyl/Rcar, Pyr1, Hab1, Mandipropamid, Pp2C Inhibitor, Hydrolase- Hydrolase Inthibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Y. Park, F. C. Peterson, A. Mosquna, J. Yao, B. F. Volkman, S. R. Cutle
Agrochemical Control Of Plant Water Use Using Engineered Abscisic Acid Receptors.
Nature V. 520 545 2015
PubMed-ID: 25652827  |  Reference-DOI: 10.1038/NATURE14123

(-) Compounds

Molecule 1 - ABSCISIC ACID RECEPTOR PYR1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: PYR1, ABIP6, RCAR11, AT4G17870, T6K21.50
    Mutation: YES
    Organism Common: MOUSE-EAR CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: ABI1-BINDING PROTEIN 6,PROTEIN PYRABACTIN RESISTANCE 1, REGULATORY COMPONENTS OF ABA RECEPTOR 11
 
Molecule 2 - PROTEIN PHOSPHATASE 2C 16
    Chains: B
    EC Number: 3.1.3.16
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11M
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: HAB1, P2C-HA, AT1G72770, F28P22.4
    Organism Common: MOUSE-EAR CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: ATPP2C16,ATP2C-HA,PROTEIN HYPERSENSITIVE TO ABA 1,PROTEIN PHOSPHATASE 2C HAB1,PP2C HAB1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
13UZ1Ligand/Ion(2S)-2-(4-CHLOROPHENYL)-N-{2-[3-METHOXY-4-(PROP-2-YN-1-YLOXY)PHENYL]ETHYL}-2-(PROP-2-YN-1-YLOXY)ETHANAMIDE
2MG3Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:59 , PHE A:61 , ALA A:89 , GLU A:94 , ALA A:108 , SER A:109 , HIS A:115 , LEU A:117 , TYR A:120 , LEU A:159 , VAL A:163 , ASN A:167 , HOH A:330 , HOH A:337 , GLY B:392binding site for residue 3UZ A 201
2AC2SOFTWAREASP B:243 , ASP B:432 , ASP B:492 , MG B:602 , MG B:603 , HOH B:835 , HOH B:837binding site for residue MG B 601
3AC3SOFTWAREARG B:199 , ASP B:243 , GLY B:244 , MG B:601 , HOH B:837 , HOH B:838binding site for residue MG B 602
4AC4SOFTWAREASP B:243 , ASP B:346 , MET B:396 , ASP B:432 , MG B:601 , HOH B:741 , HOH B:834binding site for residue MG B 603

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WVO)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys B:406 -Pro B:407

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WVO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WVO)

(-) Exons   (0, 0)

(no "Exon" information available for 4WVO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:174
                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh........eeeeeeeee..hhhhhhhhhh...hhhhh...eeeee.......eeeeee.......eeeeeeeeee....eeeeeeee.....eeeeeeeeeeeeee..eeeeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4wvo A   3 SELTPEERSELKNSIAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYRHFIKSCSVEMRVGCTRDIIVISGLPANTSTERLDILDDERRVTGASIIGGEHRLTNYKSVTTVHRFEKENRIWTVVLESYVVDMPEGNSEDDTRMLADTVVKLNLQKLATVAEAMAR 180
                                    12        22        32        42        52        62     || 76        86        96       106       116       126       136       146       156       166       176    
                                                                                            68|                                                                                                           
                                                                                             73                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:296
                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee........eeeeeeeeeeeee.hhh..eeeeeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......................ee.eeeeee...eeeeeee...eeeeee..eeee........hhhhhhhhhhh...eee...eee.........ee.hhhh.......eeeeee....eeeeeeehhhhhh..hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wvo B 186 CIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMTHLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDRQVQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQGARVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPGKGIDPACQAAADYLSMLALQKGSKDNISIIVIDLKAQR 505
                                   195       205       215     ||235       245       255       265     ||285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455      |469       479       489       499      
                                                             221|                                    271|                                                                                                                                                                                 462|                                      
                                                              232                                     282                                                                                                                                                                                  467
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WVO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WVO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WVO)

(-) Gene Ontology  (20, 24)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Lys B:406 - Pro B:407   [ RasMol ]  
 

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  4wvo
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  PYR1_ARATH | O49686
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  3.1.3.16
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        P2C16_ARATH | Q9CAJ0: 3kb3 3nmt 3qn1 3rt0 3ujg 3zvu 4ds8 4la7 4lg5 4lga 4lgb 5jo1 5jo2
        PYR1_ARATH | O49686: 3k3k 3k90 3njo 3qn1 3wg8 3zvu

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4WVO)