3N33 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE N-TERMINAL BETA-AMINOPEPTIDASE BAPA IN COMPLEX WITH PEFABLOC SC (AEBSF)

Authors :   T. Merz, T. Heck, B. Geueke, H. -P. Kohler, M. G. Gruetter

Date :   19 May 10 (Deposition) - 08 Jun 11 (Release) - 08 Feb 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Ntn Hydrolase, Alpha-Beta-Beta-Alpha Sandwich, Beta-Aminopeptidase, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Merz, T. Heck, B. Geueke, P. R. Mittl, C. Briand, D. Seebach, H. P. Kohler, M. G. Grutter
Autoproteolytic And Catalytic Mechanisms For The Beta-Aminopeptidase Bapa--A Member Of The Ntn Hydrolase Family.
Structure V. 20 1850 2012
PubMed-ID: 22980995 | Reference-DOI: 10.1016/J.STR.2012.07.017

Molecule 1 - BETA-PEPTIDYL AMINOPEPTIDASE
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PYBAPA
	Expression System Strain	:	BL21(DE3)PLYSS
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PET3C
	Gene	:	BAPA
	Organism Scientific	:	SPHINGOSINICELLA XENOPEPTIDILYTICA
	Organism Taxid	:	364098

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 30)

No.	Name	Count	Type	Full Name
1	AES	8	Ligand/Ion	4-(2-AMINOETHYL)BENZENESULFONYL FLUORIDE
2	EPE	2	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3	GOL	4	Ligand/Ion	GLYCEROL
4	SO4	16	Ligand/Ion	SULFATE ION

Asymmetric Unit (30, 30)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	VAL A:88 , GLY A:89 , GLN A:90 , PRO A:263 , HIS A:299 , ILE A:301 , PRO A:307 , HIS C:264 , ASN C:314 , ASP C:315	BINDING SITE FOR RESIDUE GOL A 374
02	AC2	SOFTWARE	GLU A:121 , ALA A:122 , PHE A:124 , SER A:125 , LEU A:303 , GLY A:304 , HOH A:447 , AES B:376 , THR C:316	BINDING SITE FOR RESIDUE EPE A 375
03	AC3	SOFTWARE	THR A:76 , GLY A:77 , GLU A:133 , SER A:250 , LEU A:287 , SO4 A:382 , HOH A:412 , LEU B:84 , PHE B:124 , SER B:125 , EPE B:375	BINDING SITE FOR RESIDUE AES A 376
04	AC4	SOFTWARE	GLU A:120 , LEU A:123 , PHE A:124 , LEU A:127 , ASN B:137 , VAL B:142 , PHE B:143	BINDING SITE FOR RESIDUE AES A 377
05	AC5	SOFTWARE	ARG A:138 , PRO A:230 , GLU A:231 , VAL A:232 , ALA A:352 , VAL A:354	BINDING SITE FOR RESIDUE SO4 A 378
06	AC6	SOFTWARE	ASP A:112 , VAL A:115 , HOH A:994 , ILE B:43 , PHE B:143 , HIS B:145	BINDING SITE FOR RESIDUE SO4 A 379
07	AC7	SOFTWARE	GLY A:285 , ALA A:286 , LEU A:287 , SER A:288 , HOH A:577 , HOH A:601 , HOH A:969 , SER D:318 , ASN D:322	BINDING SITE FOR RESIDUE SO4 A 380
08	AC8	SOFTWARE	ILE A:43 , PHE A:143 , ASP B:112 , VAL B:115	BINDING SITE FOR RESIDUE SO4 A 381
09	AC9	SOFTWARE	LEU A:135 , ASN A:207 , SER A:250 , LEU A:287 , AES A:376 , HOH A:404 , HOH A:601 , HOH A:614	BINDING SITE FOR RESIDUE SO4 A 382
10	BC1	SOFTWARE	VAL B:88 , GLY B:89 , GLN B:90 , PRO B:263 , HIS B:299 , ILE B:301 , PRO B:307 , MET D:262 , HIS D:264 , ASN D:314 , ASP D:315	BINDING SITE FOR RESIDUE GOL B 374
11	BC2	SOFTWARE	AES A:376 , GLU B:121 , ALA B:122 , PHE B:124 , SER B:125 , LEU B:303 , HOH B:425 , THR D:316	BINDING SITE FOR RESIDUE EPE B 375
12	BC3	SOFTWARE	LEU A:84 , PHE A:124 , SER A:125 , EPE A:375 , THR B:76 , GLY B:77 , GLU B:133 , SER B:250 , LEU B:287 , SO4 B:380 , HOH B:401	BINDING SITE FOR RESIDUE AES B 376
13	BC4	SOFTWARE	ASN A:137 , VAL A:142 , PHE A:143 , GLU B:120 , LEU B:123 , PHE B:124 , LEU B:127	BINDING SITE FOR RESIDUE AES B 377
14	BC5	SOFTWARE	ARG B:138 , ILE B:176 , PRO B:230 , GLU B:231 , VAL B:232 , ALA B:352 , VAL B:354	BINDING SITE FOR RESIDUE SO4 B 378
15	BC6	SOFTWARE	GLY B:285 , ALA B:286 , LEU B:287 , SER B:288 , HOH B:675 , HOH B:792 , HOH B:847 , SER C:318 , ASN C:322	BINDING SITE FOR RESIDUE SO4 B 379
16	BC7	SOFTWARE	LEU B:135 , ASN B:207 , SER B:250 , LEU B:287 , AES B:376 , HOH B:505 , HOH B:724 , HOH B:792	BINDING SITE FOR RESIDUE SO4 B 380
17	BC8	SOFTWARE	MET A:262 , HIS A:264 , ASN A:314 , ASP A:315 , VAL C:88 , GLY C:89 , GLN C:90 , PRO C:263 , HIS C:299 , ILE C:301 , PRO C:307	BINDING SITE FOR RESIDUE GOL C 374
18	BC9	SOFTWARE	THR C:76 , GLY C:77 , GLU C:133 , SER C:250 , LEU C:287 , SO4 C:381 , HOH C:419 , LEU D:84 , PHE D:124 , SER D:125 , LEU D:128	BINDING SITE FOR RESIDUE AES C 375
19	CC1	SOFTWARE	GLU C:120 , LEU C:123 , PHE C:124 , LEU C:127 , HOH C:1020 , HOH C:1081 , ASN D:137 , VAL D:142 , PHE D:143	BINDING SITE FOR RESIDUE AES C 376
20	CC2	SOFTWARE	ARG C:138 , ILE C:176 , PRO C:230 , GLU C:231 , VAL C:232 , VAL C:354	BINDING SITE FOR RESIDUE SO4 C 377
21	CC3	SOFTWARE	ASP C:112 , VAL C:115 , ILE D:43 , PHE D:143 , HIS D:145	BINDING SITE FOR RESIDUE SO4 C 378
22	CC4	SOFTWARE	SER B:318 , ASN B:322 , GLY C:285 , ALA C:286 , LEU C:287 , SER C:288 , HOH C:495 , HOH C:547 , HOH C:653	BINDING SITE FOR RESIDUE SO4 C 379
23	CC5	SOFTWARE	THR A:316 , HOH A:432 , PHE C:124 , SER C:125 , LEU C:303 , HOH C:1039 , AES D:375	BINDING SITE FOR RESIDUE SO4 C 380
24	CC6	SOFTWARE	LEU C:135 , ASN C:207 , SER C:250 , LEU C:287 , AES C:375 , HOH C:457 , HOH C:495 , HOH C:744	BINDING SITE FOR RESIDUE SO4 C 381
25	CC7	SOFTWARE	MET B:262 , HIS B:264 , ASN B:314 , ASP B:315 , VAL D:88 , GLY D:89 , GLN D:90 , PRO D:263 , HIS D:299 , ILE D:301 , PRO D:307	BINDING SITE FOR RESIDUE GOL D 374
26	CC8	SOFTWARE	LEU C:84 , LEU C:92 , PHE C:124 , SER C:125 , SO4 C:380 , THR D:76 , GLY D:77 , GLU D:133 , SER D:250 , LEU D:287 , SO4 D:379 , HOH D:400	BINDING SITE FOR RESIDUE AES D 375
27	CC9	SOFTWARE	MET C:41 , ASN C:137 , VAL C:142 , PHE C:143 , GLU D:120 , LEU D:123 , PHE D:124 , LEU D:127	BINDING SITE FOR RESIDUE AES D 376
28	DC1	SOFTWARE	ARG D:138 , PRO D:230 , GLU D:231 , ALA D:352	BINDING SITE FOR RESIDUE SO4 D 377
29	DC2	SOFTWARE	SER A:318 , ASN A:322 , GLY D:285 , ALA D:286 , LEU D:287 , SER D:288 , HOH D:488 , HOH D:596	BINDING SITE FOR RESIDUE SO4 D 378
30	DC3	SOFTWARE	LEU D:135 , ASN D:207 , SER D:250 , LEU D:287 , AES D:375 , HOH D:465 , HOH D:488 , HOH D:723	BINDING SITE FOR RESIDUE SO4 D 379

(no "SS Bond" information available for 3N33)

Asymmetric/Biological Unit

No.	Residues
1	Gly A:46	-	Pro A:47
2	Gly B:46	-	Pro B:47
3	Gly C:46	-	Pro C:47
4	Gly D:46	-	Pro D:47

(no "SAP(SNP)/Variant" information available for 3N33)

(no "PROSITE Motif" information available for 3N33)

(no "Exon" information available for 3N33)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:367
 aligned with BAPA_SPHXN | Q52VH2 from UniProtKB/Swiss-Prot  Length:402

    Alignment length:371
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399 
           BAPA_SPHXN    30 GPRARDLGVPFEGTPGALNAITDVAGVEVGHTTVISGDGAMVIGKGPYRTGVTIIHPLGKTSLDGVAAGRAVINGTGEWTGMHLVDEVGQFLGPIALTGTGNVGLVHQSMMDWSVGKVPEEALFSRLLPVVAETLDNRLNDVFGHGLTRDHVFAALDGAKGGPVAEGNVGGGTGMIAYTFKGGIGTSSRVVSAGDTRYTVGVLVQANHGDRNDLRIAGVQIGKEIKGAWPEVNGIVAAGPDAGKPQDKNSLLIVIATDAPLMPHQLERMARRAALGVGRNGSTAGALSGEFALAFSTSHVIPLGGKPRLPAIINDTDSETMNALFRGVVQATEEALVNQLVASETMTGANNAKVYGIPHDQLARIMKARFP 400
               SCOP domains d3n33a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh...........hhhhh...eeeeeeeee...........eeeeeeeee........eeeeeeeeee......hhhhhhhhhee...eeeee..hhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.............hhhhhhhhhhhh.........hhhhh..ee..ee.eeeeeeeeeee..eeeeeeeeeee........ee..ee..........ee..ee.........----.eeeeeee....hhhhhhhhhhhhhhhhhhh.........eeeeeeeeeeee...............hhhhhhhhhhhhhhhhhhhhhhhhhhh..ee....eee...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3n33 A   1 GPRARDLGVPFEGTPGALNAITDVAGVEVGHTTVISGDGAMVIGKGPYRTGVTIIHPLGKTSLDGVAAGRAVINGTGEWTGMHLVDEVGQFLGPIALTGTGNVGLVHQSMMDWSVGKVPEEALFSRLLPVVAETLDNRLNDVFGHGLTRDHVFAALDGAKGGPVAEGNVGGGTGMIAYTFKGGIGTSSRVVSAGDTRYTVGVLVQANHGDRNDLRIAGVQIGKEIKGAWPEVNGIVAAGPDAGKP----SLLIVIATDAPLMPHQLERMARRAALGVGRNGSTAGALSGEFALAFSTSHVIPLGGKPRLPAIINDTDSETMNALFRGVVQATEEALVNQLVASETMTGANNAKVYGIPHDQLARIMKARFP 371
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240    |  250       260       270       280       290       300       310       320       330       340       350       360       370 
                                                                                                                                                                                                                                                                              245  250

Chain B from PDB  Type:PROTEIN  Length:367
 aligned with BAPA_SPHXN | Q52VH2 from UniProtKB/Swiss-Prot  Length:402

    Alignment length:371
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399 
           BAPA_SPHXN    30 GPRARDLGVPFEGTPGALNAITDVAGVEVGHTTVISGDGAMVIGKGPYRTGVTIIHPLGKTSLDGVAAGRAVINGTGEWTGMHLVDEVGQFLGPIALTGTGNVGLVHQSMMDWSVGKVPEEALFSRLLPVVAETLDNRLNDVFGHGLTRDHVFAALDGAKGGPVAEGNVGGGTGMIAYTFKGGIGTSSRVVSAGDTRYTVGVLVQANHGDRNDLRIAGVQIGKEIKGAWPEVNGIVAAGPDAGKPQDKNSLLIVIATDAPLMPHQLERMARRAALGVGRNGSTAGALSGEFALAFSTSHVIPLGGKPRLPAIINDTDSETMNALFRGVVQATEEALVNQLVASETMTGANNAKVYGIPHDQLARIMKARFP 400
               SCOP domains d3n33b_ B: automated matches                                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh...........hhhhh...eeeeeeeee...........eeeeeeeee........eeeeeeeeee......hhhhhhhhheee..eeeee..hhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.............hhhhhhhhhhhh.........hhhhh..ee..ee.eeeeeeeeeee..eeeeeeeeeee........ee..ee..........ee..ee.........----.eeeeeee....hhhhhhhhhhhhhhhhhhh.........eeeeeeeeeeee...............hhhhhhhhhhhhhhhhhhhhhhhhhhh..ee....eee...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3n33 B   1 GPRARDLGVPFEGTPGALNAITDVAGVEVGHTTVISGDGAMVIGKGPYRTGVTIIHPLGKTSLDGVAAGRAVINGTGEWTGMHLVDEVGQFLGPIALTGTGNVGLVHQSMMDWSVGKVPEEALFSRLLPVVAETLDNRLNDVFGHGLTRDHVFAALDGAKGGPVAEGNVGGGTGMIAYTFKGGIGTSSRVVSAGDTRYTVGVLVQANHGDRNDLRIAGVQIGKEIKGAWPEVNGIVAAGPDAGKP----SLLIVIATDAPLMPHQLERMARRAALGVGRNGSTAGALSGEFALAFSTSHVIPLGGKPRLPAIINDTDSETMNALFRGVVQATEEALVNQLVASETMTGANNAKVYGIPHDQLARIMKARFP 371
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240    |  250       260       270       280       290       300       310       320       330       340       350       360       370 
                                                                                                                                                                                                                                                                              245  250

Chain C from PDB  Type:PROTEIN  Length:367
 aligned with BAPA_SPHXN | Q52VH2 from UniProtKB/Swiss-Prot  Length:402

    Alignment length:371
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399 
           BAPA_SPHXN    30 GPRARDLGVPFEGTPGALNAITDVAGVEVGHTTVISGDGAMVIGKGPYRTGVTIIHPLGKTSLDGVAAGRAVINGTGEWTGMHLVDEVGQFLGPIALTGTGNVGLVHQSMMDWSVGKVPEEALFSRLLPVVAETLDNRLNDVFGHGLTRDHVFAALDGAKGGPVAEGNVGGGTGMIAYTFKGGIGTSSRVVSAGDTRYTVGVLVQANHGDRNDLRIAGVQIGKEIKGAWPEVNGIVAAGPDAGKPQDKNSLLIVIATDAPLMPHQLERMARRAALGVGRNGSTAGALSGEFALAFSTSHVIPLGGKPRLPAIINDTDSETMNALFRGVVQATEEALVNQLVASETMTGANNAKVYGIPHDQLARIMKARFP 400
               SCOP domains d3n33c_ C: automated matches                                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh...........hhhhh...eeeeeeeee...........eeeeeeeee........eeeeeeeeee......hhhhhhhhheee..eeeee..hhhhhhhhhhhhhhh..hhhhhhhhh..eeeee.............hhhhhhhhhhhh.........hhhhh..ee..ee.eeeeeeeeeee..eeeeeeeeeee........ee..ee..........ee..ee.........----.eeeeeee....hhhhhhhhhhhhhhhhhhh.........eeeeeeeeeeee...............hhhhhhhhhhhhhhhhhhhhhhhhhhh..ee....eee...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3n33 C   1 GPRARDLGVPFEGTPGALNAITDVAGVEVGHTTVISGDGAMVIGKGPYRTGVTIIHPLGKTSLDGVAAGRAVINGTGEWTGMHLVDEVGQFLGPIALTGTGNVGLVHQSMMDWSVGKVPEEALFSRLLPVVAETLDNRLNDVFGHGLTRDHVFAALDGAKGGPVAEGNVGGGTGMIAYTFKGGIGTSSRVVSAGDTRYTVGVLVQANHGDRNDLRIAGVQIGKEIKGAWPEVNGIVAAGPDAGKP----SLLIVIATDAPLMPHQLERMARRAALGVGRNGSTAGALSGEFALAFSTSHVIPLGGKPRLPAIINDTDSETMNALFRGVVQATEEALVNQLVASETMTGANNAKVYGIPHDQLARIMKARFP 371
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240    |  250       260       270       280       290       300       310       320       330       340       350       360       370 
                                                                                                                                                                                                                                                                              245  250

Chain D from PDB  Type:PROTEIN  Length:367
 aligned with BAPA_SPHXN | Q52VH2 from UniProtKB/Swiss-Prot  Length:402

    Alignment length:371
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399 
           BAPA_SPHXN    30 GPRARDLGVPFEGTPGALNAITDVAGVEVGHTTVISGDGAMVIGKGPYRTGVTIIHPLGKTSLDGVAAGRAVINGTGEWTGMHLVDEVGQFLGPIALTGTGNVGLVHQSMMDWSVGKVPEEALFSRLLPVVAETLDNRLNDVFGHGLTRDHVFAALDGAKGGPVAEGNVGGGTGMIAYTFKGGIGTSSRVVSAGDTRYTVGVLVQANHGDRNDLRIAGVQIGKEIKGAWPEVNGIVAAGPDAGKPQDKNSLLIVIATDAPLMPHQLERMARRAALGVGRNGSTAGALSGEFALAFSTSHVIPLGGKPRLPAIINDTDSETMNALFRGVVQATEEALVNQLVASETMTGANNAKVYGIPHDQLARIMKARFP 400
               SCOP domains d3n33d_ D: automated matches                                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh...........hhhhh...eeeeeeeee...........eeeeeeeee........eeeeeeeeee......hhhhhhhhhee...eeeee..hhhhhhhhhhhhhhh..hhhhhhhhh..eeeee.............hhhhhhhhhhhh.........hhhhh..ee..ee.eeeeeeeeeee..eeeeeeeeeee........ee..ee..........ee..ee.........----.eeeeeee....hhhhhhhhhhhhhhhhhhh.........eeeeeeeeeeee...............hhhhhhhhhhhhhhhhhhhhhhhhhhh..ee....eee...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3n33 D   1 GPRARDLGVPFEGTPGALNAITDVAGVEVGHTTVISGDGAMVIGKGPYRTGVTIIHPLGKTSLDGVAAGRAVINGTGEWTGMHLVDEVGQFLGPIALTGTGNVGLVHQSMMDWSVGKVPEEALFSRLLPVVAETLDNRLNDVFGHGLTRDHVFAALDGAKGGPVAEGNVGGGTGMIAYTFKGGIGTSSRVVSAGDTRYTVGVLVQANHGDRNDLRIAGVQIGKEIKGAWPEVNGIVAAGPDAGKP----SLLIVIATDAPLMPHQLERMARRAALGVGRNGSTAGALSGEFALAFSTSHVIPLGGKPRLPAIINDTDSETMNALFRGVVQATEEALVNQLVASETMTGANNAKVYGIPHDQLARIMKARFP 371
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240    |  250       260       270       280       290       300       310       320       330       340       350       360       370 
                                                                                                                                                                                                                                                                              245  250

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: DmpA/ArgJ-like (10)

Superfamily: DmpA/ArgJ-like (10)

Family: automated matches (6)

Protein domain: automated matches (6)

Sphingosinicella xenopeptidilytica [TaxId: 364098] (5)

1a	d3n33a_	A:
1b	d3n33b_	B:
1c	d3n33c_	C:
1d	d3n33d_	D:

(no "CATH Domain" information available for 3N33)

(no "Pfam Domain" information available for 3N33)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (BAPA_SPHXN | Q52VH2)

molecular function
	GO:0004177	aminopeptidase activity	Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
biological process
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Gly A:46 - Pro A:47	[ RasMol ]
		Gly B:46 - Pro B:47	[ RasMol ]
		Gly C:46 - Pro C:47	[ RasMol ]
		Gly D:46 - Pro D:47	[ RasMol ]

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	3n33
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	BAPA_SPHXN \| Q52VH2
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	BAPA_SPHXN \| Q52VH2
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UniProtKB/Swiss-Prot
	BAPA_SPHXN \| Q52VH2	:	3n2w 3n5i 3ndv 3nfb

3n2w	NATIVE ENZYME
3n5i

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 30)

Sites (30, 30)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 4)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (5, 5)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File