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3N33
Asym. Unit
Info
Asym.Unit (252 KB)
Biol.Unit 1 (246 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE N-TERMINAL BETA-AMINOPEPTIDASE BAPA IN COMPLEX WITH PEFABLOC SC (AEBSF)
Authors
:
T. Merz, T. Heck, B. Geueke, H. -P. Kohler, M. G. Gruetter
Date
:
19 May 10 (Deposition) - 08 Jun 11 (Release) - 08 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Ntn Hydrolase, Alpha-Beta-Beta-Alpha Sandwich, Beta-Aminopeptidase, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Merz, T. Heck, B. Geueke, P. R. Mittl, C. Briand, D. Seebach, H. P. Kohler, M. G. Grutter
Autoproteolytic And Catalytic Mechanisms For The Beta-Aminopeptidase Bapa--A Member Of The Ntn Hydrolase Family.
Structure V. 20 1850 2012
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Hetero Components
(4, 30)
Info
All Hetero Components
1a: 4-(2-AMINOETHYL)BENZENESULFONYL FL... (AESa)
1b: 4-(2-AMINOETHYL)BENZENESULFONYL FL... (AESb)
1c: 4-(2-AMINOETHYL)BENZENESULFONYL FL... (AESc)
1d: 4-(2-AMINOETHYL)BENZENESULFONYL FL... (AESd)
1e: 4-(2-AMINOETHYL)BENZENESULFONYL FL... (AESe)
1f: 4-(2-AMINOETHYL)BENZENESULFONYL FL... (AESf)
1g: 4-(2-AMINOETHYL)BENZENESULFONYL FL... (AESg)
1h: 4-(2-AMINOETHYL)BENZENESULFONYL FL... (AESh)
2a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
2b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
4p: SULFATE ION (SO4p)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AES
8
Ligand/Ion
4-(2-AMINOETHYL)BENZENESULFONYL FLUORIDE
2
EPE
2
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3
GOL
4
Ligand/Ion
GLYCEROL
4
SO4
16
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:88 , GLY A:89 , GLN A:90 , PRO A:263 , HIS A:299 , ILE A:301 , PRO A:307 , HIS C:264 , ASN C:314 , ASP C:315
BINDING SITE FOR RESIDUE GOL A 374
02
AC2
SOFTWARE
GLU A:121 , ALA A:122 , PHE A:124 , SER A:125 , LEU A:303 , GLY A:304 , HOH A:447 , AES B:376 , THR C:316
BINDING SITE FOR RESIDUE EPE A 375
03
AC3
SOFTWARE
THR A:76 , GLY A:77 , GLU A:133 , SER A:250 , LEU A:287 , SO4 A:382 , HOH A:412 , LEU B:84 , PHE B:124 , SER B:125 , EPE B:375
BINDING SITE FOR RESIDUE AES A 376
04
AC4
SOFTWARE
GLU A:120 , LEU A:123 , PHE A:124 , LEU A:127 , ASN B:137 , VAL B:142 , PHE B:143
BINDING SITE FOR RESIDUE AES A 377
05
AC5
SOFTWARE
ARG A:138 , PRO A:230 , GLU A:231 , VAL A:232 , ALA A:352 , VAL A:354
BINDING SITE FOR RESIDUE SO4 A 378
06
AC6
SOFTWARE
ASP A:112 , VAL A:115 , HOH A:994 , ILE B:43 , PHE B:143 , HIS B:145
BINDING SITE FOR RESIDUE SO4 A 379
07
AC7
SOFTWARE
GLY A:285 , ALA A:286 , LEU A:287 , SER A:288 , HOH A:577 , HOH A:601 , HOH A:969 , SER D:318 , ASN D:322
BINDING SITE FOR RESIDUE SO4 A 380
08
AC8
SOFTWARE
ILE A:43 , PHE A:143 , ASP B:112 , VAL B:115
BINDING SITE FOR RESIDUE SO4 A 381
09
AC9
SOFTWARE
LEU A:135 , ASN A:207 , SER A:250 , LEU A:287 , AES A:376 , HOH A:404 , HOH A:601 , HOH A:614
BINDING SITE FOR RESIDUE SO4 A 382
10
BC1
SOFTWARE
VAL B:88 , GLY B:89 , GLN B:90 , PRO B:263 , HIS B:299 , ILE B:301 , PRO B:307 , MET D:262 , HIS D:264 , ASN D:314 , ASP D:315
BINDING SITE FOR RESIDUE GOL B 374
11
BC2
SOFTWARE
AES A:376 , GLU B:121 , ALA B:122 , PHE B:124 , SER B:125 , LEU B:303 , HOH B:425 , THR D:316
BINDING SITE FOR RESIDUE EPE B 375
12
BC3
SOFTWARE
LEU A:84 , PHE A:124 , SER A:125 , EPE A:375 , THR B:76 , GLY B:77 , GLU B:133 , SER B:250 , LEU B:287 , SO4 B:380 , HOH B:401
BINDING SITE FOR RESIDUE AES B 376
13
BC4
SOFTWARE
ASN A:137 , VAL A:142 , PHE A:143 , GLU B:120 , LEU B:123 , PHE B:124 , LEU B:127
BINDING SITE FOR RESIDUE AES B 377
14
BC5
SOFTWARE
ARG B:138 , ILE B:176 , PRO B:230 , GLU B:231 , VAL B:232 , ALA B:352 , VAL B:354
BINDING SITE FOR RESIDUE SO4 B 378
15
BC6
SOFTWARE
GLY B:285 , ALA B:286 , LEU B:287 , SER B:288 , HOH B:675 , HOH B:792 , HOH B:847 , SER C:318 , ASN C:322
BINDING SITE FOR RESIDUE SO4 B 379
16
BC7
SOFTWARE
LEU B:135 , ASN B:207 , SER B:250 , LEU B:287 , AES B:376 , HOH B:505 , HOH B:724 , HOH B:792
BINDING SITE FOR RESIDUE SO4 B 380
17
BC8
SOFTWARE
MET A:262 , HIS A:264 , ASN A:314 , ASP A:315 , VAL C:88 , GLY C:89 , GLN C:90 , PRO C:263 , HIS C:299 , ILE C:301 , PRO C:307
BINDING SITE FOR RESIDUE GOL C 374
18
BC9
SOFTWARE
THR C:76 , GLY C:77 , GLU C:133 , SER C:250 , LEU C:287 , SO4 C:381 , HOH C:419 , LEU D:84 , PHE D:124 , SER D:125 , LEU D:128
BINDING SITE FOR RESIDUE AES C 375
19
CC1
SOFTWARE
GLU C:120 , LEU C:123 , PHE C:124 , LEU C:127 , HOH C:1020 , HOH C:1081 , ASN D:137 , VAL D:142 , PHE D:143
BINDING SITE FOR RESIDUE AES C 376
20
CC2
SOFTWARE
ARG C:138 , ILE C:176 , PRO C:230 , GLU C:231 , VAL C:232 , VAL C:354
BINDING SITE FOR RESIDUE SO4 C 377
21
CC3
SOFTWARE
ASP C:112 , VAL C:115 , ILE D:43 , PHE D:143 , HIS D:145
BINDING SITE FOR RESIDUE SO4 C 378
22
CC4
SOFTWARE
SER B:318 , ASN B:322 , GLY C:285 , ALA C:286 , LEU C:287 , SER C:288 , HOH C:495 , HOH C:547 , HOH C:653
BINDING SITE FOR RESIDUE SO4 C 379
23
CC5
SOFTWARE
THR A:316 , HOH A:432 , PHE C:124 , SER C:125 , LEU C:303 , HOH C:1039 , AES D:375
BINDING SITE FOR RESIDUE SO4 C 380
24
CC6
SOFTWARE
LEU C:135 , ASN C:207 , SER C:250 , LEU C:287 , AES C:375 , HOH C:457 , HOH C:495 , HOH C:744
BINDING SITE FOR RESIDUE SO4 C 381
25
CC7
SOFTWARE
MET B:262 , HIS B:264 , ASN B:314 , ASP B:315 , VAL D:88 , GLY D:89 , GLN D:90 , PRO D:263 , HIS D:299 , ILE D:301 , PRO D:307
BINDING SITE FOR RESIDUE GOL D 374
26
CC8
SOFTWARE
LEU C:84 , LEU C:92 , PHE C:124 , SER C:125 , SO4 C:380 , THR D:76 , GLY D:77 , GLU D:133 , SER D:250 , LEU D:287 , SO4 D:379 , HOH D:400
BINDING SITE FOR RESIDUE AES D 375
27
CC9
SOFTWARE
MET C:41 , ASN C:137 , VAL C:142 , PHE C:143 , GLU D:120 , LEU D:123 , PHE D:124 , LEU D:127
BINDING SITE FOR RESIDUE AES D 376
28
DC1
SOFTWARE
ARG D:138 , PRO D:230 , GLU D:231 , ALA D:352
BINDING SITE FOR RESIDUE SO4 D 377
29
DC2
SOFTWARE
SER A:318 , ASN A:322 , GLY D:285 , ALA D:286 , LEU D:287 , SER D:288 , HOH D:488 , HOH D:596
BINDING SITE FOR RESIDUE SO4 D 378
30
DC3
SOFTWARE
LEU D:135 , ASN D:207 , SER D:250 , LEU D:287 , AES D:375 , HOH D:465 , HOH D:488 , HOH D:723
BINDING SITE FOR RESIDUE SO4 D 379
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3n33a_ (A:)
1b: SCOP_d3n33b_ (B:)
1c: SCOP_d3n33c_ (C:)
1d: SCOP_d3n33d_ (D:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DmpA/ArgJ-like
(10)
Superfamily
:
DmpA/ArgJ-like
(10)
Family
:
automated matches
(6)
Protein domain
:
automated matches
(6)
Sphingosinicella xenopeptidilytica [TaxId: 364098]
(5)
1a
d3n33a_
A:
1b
d3n33b_
B:
1c
d3n33c_
C:
1d
d3n33d_
D:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Asym.Unit (252 KB)
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