3MO5 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   HUMAN G9A-LIKE (GLP, ALSO KNOWN AS EHMT1) IN COMPLEX WITH INHIBITOR E72

Authors :   Y. Chang, J. R. Horton, X. Cheng

Date :   22 Apr 10 (Deposition) - 30 Jun 10 (Release) - 30 Jun 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.14

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: A,B  (1x)
Biol. Unit 6: C,D  (1x)

Keywords :   Epigenetics, Histone Lysine Methylation, Enzymatic Inhibition, Lysine Mimics, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Chang, T. Ganesh, J. R. Horton, A. Spannhoff, J. Liu, A. Sun, X. Zhang, M. T. Bedford, Y. Shinkai, J. P. Snyder, X. Cheng
Adding A Lysine Mimic In The Design Of Potent Inhibitors Of Histone Lysine Methyltransferases.
J. Mol. Biol. V. 400 1 2010
PubMed-ID: 20434463 | Reference-DOI: 10.1016/J.JMB.2010.04.048

Molecule 1 - HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC 5
	Chains	:	A, B, C, D
	EC Number	:	2.1.1.43
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	C-TERMINAL SET DOMAIN
	Gene	:	EHMT1, EUHMTASE1, KIAA1876, KMT1D
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	HISTONE H3-K9 METHYLTRANSFERASE 5, H3-K9-HMTASE 5, EUCHROMATIC HISTONE-LYSINE N-METHYLTRANSFERASE 1, EU-HMTASE1, G9A- LIKE PROTEIN 1, GLP1, LYSINE N-METHYLTRANSFERASE 1D

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:	A	B
Biological Unit 6 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 22)

No.	Name	Count	Type	Full Name
1	E72	4	Ligand/Ion	7-[(5-AMINOPENTYL)OXY]-N~4~-[1-(5-AMINOPENTYL)PIPERIDIN-4-YL]-N~2~-[3-(DIMETHYLAMINO)PROPYL]-6-METHOXYQUINAZOLINE-2,4-DIAMINE
2	SAH	2	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE
3	ZN	16	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	E72	1	Ligand/Ion	7-[(5-AMINOPENTYL)OXY]-N~4~-[1-(5-AMINOPENTYL)PIPERIDIN-4-YL]-N~2~-[3-(DIMETHYLAMINO)PROPYL]-6-METHOXYQUINAZOLINE-2,4-DIAMINE
2	SAH	-1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	E72	1	Ligand/Ion	7-[(5-AMINOPENTYL)OXY]-N~4~-[1-(5-AMINOPENTYL)PIPERIDIN-4-YL]-N~2~-[3-(DIMETHYLAMINO)PROPYL]-6-METHOXYQUINAZOLINE-2,4-DIAMINE
2	SAH	-1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (2, 2)

No.	Name	Count	Type	Full Name
1	E72	1	Ligand/Ion	7-[(5-AMINOPENTYL)OXY]-N~4~-[1-(5-AMINOPENTYL)PIPERIDIN-4-YL]-N~2~-[3-(DIMETHYLAMINO)PROPYL]-6-METHOXYQUINAZOLINE-2,4-DIAMINE
2	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 4 (2, 2)

No.	Name	Count	Type	Full Name
1	E72	1	Ligand/Ion	7-[(5-AMINOPENTYL)OXY]-N~4~-[1-(5-AMINOPENTYL)PIPERIDIN-4-YL]-N~2~-[3-(DIMETHYLAMINO)PROPYL]-6-METHOXYQUINAZOLINE-2,4-DIAMINE
2	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 5 (1, 2)

No.	Name	Count	Type	Full Name
1	E72	2	Ligand/Ion	7-[(5-AMINOPENTYL)OXY]-N~4~-[1-(5-AMINOPENTYL)PIPERIDIN-4-YL]-N~2~-[3-(DIMETHYLAMINO)PROPYL]-6-METHOXYQUINAZOLINE-2,4-DIAMINE
2	SAH	-1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 6 (2, 4)

No.	Name	Count	Type	Full Name
1	E72	2	Ligand/Ion	7-[(5-AMINOPENTYL)OXY]-N~4~-[1-(5-AMINOPENTYL)PIPERIDIN-4-YL]-N~2~-[3-(DIMETHYLAMINO)PROPYL]-6-METHOXYQUINAZOLINE-2,4-DIAMINE
2	SAH	2	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE
3	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (22, 22)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	CYS A:1031 , CYS A:1044 , CYS A:1074 , CYS A:1078	BINDING SITE FOR RESIDUE ZN A 1
02	AC2	SOFTWARE	ZN A:3 , CYS A:1037 , CYS A:1074 , CYS A:1080 , CYS A:1084	BINDING SITE FOR RESIDUE ZN A 2
03	AC3	SOFTWARE	ZN A:2 , CYS A:1031 , CYS A:1033 , CYS A:1037 , CYS A:1042	BINDING SITE FOR RESIDUE ZN A 3
04	AC4	SOFTWARE	CYS A:1172 , CYS A:1225 , CYS A:1227 , CYS A:1232	BINDING SITE FOR RESIDUE ZN A 4
05	AC5	SOFTWARE	HOH A:245 , HOH A:672 , HOH A:674 , TYR A:1124 , ASP A:1131 , ALA A:1134 , ASP A:1135 , ARG A:1137 , ASP A:1140 , SER A:1141 , LEU A:1143 , ASP A:1145 , TYR A:1211 , ARG A:1214 , PHE A:1215 , LYS A:1219	BINDING SITE FOR RESIDUE E72 A 1236
06	AC6	SOFTWARE	ZN B:7 , CYS B:1031 , CYS B:1044 , CYS B:1074 , CYS B:1078	BINDING SITE FOR RESIDUE ZN B 5
07	AC7	SOFTWARE	CYS B:1037 , CYS B:1074 , CYS B:1080 , CYS B:1084	BINDING SITE FOR RESIDUE ZN B 6
08	AC8	SOFTWARE	ZN B:5 , CYS B:1031 , CYS B:1033 , CYS B:1037 , CYS B:1042	BINDING SITE FOR RESIDUE ZN B 7
09	AC9	SOFTWARE	CYS B:1172 , CYS B:1225 , CYS B:1227 , CYS B:1232	BINDING SITE FOR RESIDUE ZN B 8
10	BC1	SOFTWARE	HOH B:86 , HOH B:197 , ASP B:1131 , ALA B:1134 , ASP B:1135 , VAL B:1136 , ARG B:1137 , ASP B:1140 , SER B:1141 , LEU B:1143 , ASP B:1145 , TYR B:1211 , ARG B:1214 , PHE B:1215 , ILE B:1218 , LYS B:1219 , HOH D:153 , ASP D:1022 , ARG D:1189	BINDING SITE FOR RESIDUE E72 B 2
11	BC2	SOFTWARE	ZN C:2 , CYS C:1031 , CYS C:1044 , CYS C:1074 , CYS C:1078	BINDING SITE FOR RESIDUE ZN C 1
12	BC3	SOFTWARE	ZN C:1 , CYS C:1037 , CYS C:1074 , CYS C:1080 , CYS C:1084	BINDING SITE FOR RESIDUE ZN C 2
13	BC4	SOFTWARE	CYS C:1031 , CYS C:1033 , CYS C:1037 , CYS C:1042	BINDING SITE FOR RESIDUE ZN C 3
14	BC5	SOFTWARE	CYS C:1172 , CYS C:1225 , CYS C:1227 , CYS C:1232	BINDING SITE FOR RESIDUE ZN C 4
15	BC6	SOFTWARE	HOH C:362 , MET C:1105 , GLY C:1106 , TRP C:1107 , TYR C:1142 , ARG C:1166 , ASN C:1169 , HIS C:1170 , TYR C:1211 , CYS C:1225 , ARG C:1226 , CYS C:1227	BINDING SITE FOR RESIDUE SAH C 103
16	BC7	SOFTWARE	HOH A:132 , HOH A:244 , ASP A:1022 , GLU A:1152 , ASP A:1187 , ARG A:1189 , HOH C:172 , HOH C:398 , ASP C:1131 , ALA C:1134 , ASP C:1135 , ASP C:1140 , SER C:1141 , LEU C:1143 , ASP C:1145 , TYR C:1211 , ARG C:1214 , PHE C:1215 , LYS C:1219	BINDING SITE FOR RESIDUE E72 C 1236
17	BC8	SOFTWARE	HOH D:548 , CYS D:1031 , CYS D:1044 , CYS D:1074 , CYS D:1078	BINDING SITE FOR RESIDUE ZN D 5
18	BC9	SOFTWARE	HOH D:548 , CYS D:1037 , CYS D:1074 , CYS D:1080 , CYS D:1084	BINDING SITE FOR RESIDUE ZN D 6
19	CC1	SOFTWARE	CYS D:1031 , CYS D:1033 , CYS D:1037 , CYS D:1042	BINDING SITE FOR RESIDUE ZN D 7
20	CC2	SOFTWARE	CYS D:1172 , CYS D:1225 , CYS D:1227 , CYS D:1232	BINDING SITE FOR RESIDUE ZN D 8
21	CC3	SOFTWARE	MET D:1105 , GLY D:1106 , TRP D:1107 , TYR D:1142 , ARG D:1166 , ASN D:1169 , HIS D:1170 , TYR D:1211 , PHE D:1215 , PHE D:1223 , CYS D:1225 , ARG D:1226	BINDING SITE FOR RESIDUE SAH D 104
22	CC4	SOFTWARE	HOH D:453 , ASP D:1131 , ALA D:1134 , ASP D:1135 , VAL D:1136 , ARG D:1137 , ASP D:1140 , SER D:1141 , LEU D:1143 , ASP D:1145 , TYR D:1211 , ARG D:1214 , PHE D:1215 , ILE D:1218	BINDING SITE FOR RESIDUE E72 D 4

(no "SS Bond" information available for 3MO5)

(no "Cis Peptide Bond" information available for 3MO5)

Asymmetric Unit (2, 8)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_069183	C	1075	Y	EHMT1_HUMAN	Disease (KLESTS)	---	A/B/C/D	C	1044	Y
2	UniProt	VAR_036346	Y	1173	F	EHMT1_HUMAN	Unclassified	---	A/B/C/D	Y	1142	F

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_069183	C	1075	Y	EHMT1_HUMAN	Disease (KLESTS)	---	A	C	1044	Y
2	UniProt	VAR_036346	Y	1173	F	EHMT1_HUMAN	Unclassified	---	A	Y	1142	F

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_069183	C	1075	Y	EHMT1_HUMAN	Disease (KLESTS)	---	B	C	1044	Y
2	UniProt	VAR_036346	Y	1173	F	EHMT1_HUMAN	Unclassified	---	B	Y	1142	F

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_069183	C	1075	Y	EHMT1_HUMAN	Disease (KLESTS)	---	C	C	1044	Y
2	UniProt	VAR_036346	Y	1173	F	EHMT1_HUMAN	Unclassified	---	C	Y	1142	F

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_069183	C	1075	Y	EHMT1_HUMAN	Disease (KLESTS)	---	D	C	1044	Y
2	UniProt	VAR_036346	Y	1173	F	EHMT1_HUMAN	Unclassified	---	D	Y	1142	F

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 5 (2, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_069183	C	1075	Y	EHMT1_HUMAN	Disease (KLESTS)	---	A/B	C	1044	Y
2	UniProt	VAR_036346	Y	1173	F	EHMT1_HUMAN	Unclassified	---	A/B	Y	1142	F

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 6 (2, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_069183	C	1075	Y	EHMT1_HUMAN	Disease (KLESTS)	---	C/D	C	1044	Y
2	UniProt	VAR_036346	Y	1173	F	EHMT1_HUMAN	Unclassified	---	C/D	Y	1142	F

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PRE_SET	PS50867	Pre-SET domain profile.	EHMT1_HUMAN	1060-1123	4	A:1029-1092 B:1029-1092 C:1029-1092 D:1029-1092
2	SET	PS50280	SET domain profile.	EHMT1_HUMAN	1126-1243	4	A:1095-1212 B:1095-1212 C:1095-1212 D:1095-1212

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PRE_SET	PS50867	Pre-SET domain profile.	EHMT1_HUMAN	1060-1123	1	A:1029-1092 - - -
2	SET	PS50280	SET domain profile.	EHMT1_HUMAN	1126-1243	1	A:1095-1212 - - -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PRE_SET	PS50867	Pre-SET domain profile.	EHMT1_HUMAN	1060-1123	1	- B:1029-1092 - -
2	SET	PS50280	SET domain profile.	EHMT1_HUMAN	1126-1243	1	- B:1095-1212 - -

Biological Unit 3 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PRE_SET	PS50867	Pre-SET domain profile.	EHMT1_HUMAN	1060-1123	1	- - C:1029-1092 -
2	SET	PS50280	SET domain profile.	EHMT1_HUMAN	1126-1243	1	- - C:1095-1212 -

Biological Unit 4 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PRE_SET	PS50867	Pre-SET domain profile.	EHMT1_HUMAN	1060-1123	1	- - - D:1029-1092
2	SET	PS50280	SET domain profile.	EHMT1_HUMAN	1126-1243	1	- - - D:1095-1212

Biological Unit 5 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PRE_SET	PS50867	Pre-SET domain profile.	EHMT1_HUMAN	1060-1123	2	A:1029-1092 B:1029-1092 - -
2	SET	PS50280	SET domain profile.	EHMT1_HUMAN	1126-1243	2	A:1095-1212 B:1095-1212 - -

Biological Unit 6 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PRE_SET	PS50867	Pre-SET domain profile.	EHMT1_HUMAN	1060-1123	2	- - C:1029-1092 D:1029-1092
2	SET	PS50280	SET domain profile.	EHMT1_HUMAN	1126-1243	2	- - C:1095-1212 D:1095-1212

(no "Exon" information available for 3MO5)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:255
 aligned with EHMT1_HUMAN | Q9H9B1 from UniProtKB/Swiss-Prot  Length:1298

    Alignment length:258
                                  1018      1028      1038      1048      1058      1068      1078      1088      1098      1108      1118      1128      1138      1148      1158      1168      1178      1188      1198      1208      1218      1228      1238      1248      1258        
         EHMT1_HUMAN   1009 IVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSNCMCGQLSMRCWYDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKCRHS 1266
               SCOP domains d3mo5a_ A: automated matches                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ................ee............ee..............hhhhh.............hhhhhhh......................ee...............hhhhh....eeeee.....eeeee........eeee..eeeeehhhhh.......eeee.---...eeeeeeeee.hhhhhee.....eeeeeee.........eeeeee..........ee..hhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------Y-------------------------------------------------------------------------------------------------F--------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------PRE_SET  PDB: A:1029-1092 UniProt: 1060-1123                    --SET  PDB: A:1095-1212 UniProt: 1126-1243                                                                              ----------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3mo5 A  978 IVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSNCMCGQLSMRCWYDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREEDSYLFDLD---GEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKCRHS 1235
                                   987       997      1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147   |  1157      1167      1177      1187      1197      1207      1217      1227        
                                                                                                                                                                                                  1147   |                                                                                    
                                                                                                                                                                                                      1151

Chain B from PDB  Type:PROTEIN  Length:258
 aligned with EHMT1_HUMAN | Q9H9B1 from UniProtKB/Swiss-Prot  Length:1298

    Alignment length:260
                                  1016      1026      1036      1046      1056      1066      1076      1086      1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206      1216      1226      1236      1246      1256      1266
         EHMT1_HUMAN   1007 ERIVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSNCMCGQLSMRCWYDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKCRHS 1266
               SCOP domains d3mo5b_ B: automated matches                                                                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.............eee...........ee..............hhhhh.............hhhhhhh......................ee...............hhhhh....eeeee.....eeeee........eeeee.eeeeehhhhh.......eee....--..eeeeeeeee.hhhhhee.....eeeeeee.........eeeeee..........ee..hhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------Y-------------------------------------------------------------------------------------------------F--------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------PRE_SET  PDB: B:1029-1092 UniProt: 1060-1123                    --SET  PDB: B:1095-1212 UniProt: 1126-1243                                                                              ----------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3mo5 B  976 ERIVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSNCMCGQLSMRCWYDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREEDSYLFDLDNK--EVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKCRHS 1235
                                   985       995      1005      1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145   |  1155      1165      1175      1185      1195      1205      1215      1225      1235
                                                                                                                                                                                                      1149  |                                                                                   
                                                                                                                                                                                                         1152

Chain C from PDB  Type:PROTEIN  Length:258
 aligned with EHMT1_HUMAN | Q9H9B1 from UniProtKB/Swiss-Prot  Length:1298

    Alignment length:261
                                  1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175      1185      1195      1205      1215      1225      1235      1245      1255      1265 
         EHMT1_HUMAN   1006 VERIVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSNCMCGQLSMRCWYDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKCRHS 1266
               SCOP domains d3mo5c_ C: automated matches                                                                                                                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.............eee...........ee..............hhhhh.............hhhhhhh......................ee...............hhhhh....eeeee.....eeeee........eeeee.eeeeehhhhh.......eee..---...eeeeeeeee.hhhhhee.....eeeeeee.........eeeeee..........ee..hhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------Y-------------------------------------------------------------------------------------------------F--------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------PRE_SET  PDB: C:1029-1092 UniProt: 1060-1123                    --SET  PDB: C:1095-1212 UniProt: 1126-1243                                                                              ----------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3mo5 C  975 VERIVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSNCMCGQLSMRCWYDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREEDSYLFDLD---GEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKCRHS 1235
                                   984       994      1004      1014      1024      1034      1044      1054      1064      1074      1084      1094      1104      1114      1124      1134      1144  |   1154      1164      1174      1184      1194      1204      1214      1224      1234 
                                                                                                                                                                                                     1147   |                                                                                    
                                                                                                                                                                                                         1151

Chain D from PDB  Type:PROTEIN  Length:256
 aligned with EHMT1_HUMAN | Q9H9B1 from UniProtKB/Swiss-Prot  Length:1298

    Alignment length:260
                                  1016      1026      1036      1046      1056      1066      1076      1086      1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1206      1216      1226      1236      1246      1256      1266
         EHMT1_HUMAN   1007 ERIVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSNCMCGQLSMRCWYDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKCRHS 1266
               SCOP domains d3mo5d_ D: automated matches                                                                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------Pre-SET-3mo5D01 D:982-1087                                                                                ------------------SET-3mo5D05 D:1106-1204                                                                            ------------------------------- Pfam domains (1)
           Pfam domains (2) ------Pre-SET-3mo5D02 D:982-1087                                                                                ------------------SET-3mo5D06 D:1106-1204                                                                            ------------------------------- Pfam domains (2)
           Pfam domains (3) ------Pre-SET-3mo5D03 D:982-1087                                                                                ------------------SET-3mo5D07 D:1106-1204                                                                            ------------------------------- Pfam domains (3)
           Pfam domains (4) ------Pre-SET-3mo5D04 D:982-1087                                                                                ------------------SET-3mo5D08 D:1106-1204                                                                            ------------------------------- Pfam domains (4)
         Sec.struct. author .eeee.............eee...........ee..............hhhhh.............hhhhhhh......................ee...............hhhhh....eeeee.....eeeee........eeee..eeeeehhhhh.......eee..----..eeeeeeeee.hhhhhee.....eeeeeee.........eeeeee..........ee..hhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------Y-------------------------------------------------------------------------------------------------F--------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------PRE_SET  PDB: D:1029-1092 UniProt: 1060-1123                    --SET  PDB: D:1095-1212 UniProt: 1126-1243                                                                              ----------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3mo5 D  976 ERIVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSNCMCGQLSMRCWYDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREEDSYLFDLD----EVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKCRHS 1235
                                   985       995      1005      1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145 |    1155      1165      1175      1185      1195      1205      1215      1225      1235
                                                                                                                                                                                                    1147 1152

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: beta-clip (280)

Superfamily: SET domain (44)

Family: automated matches (11)

Protein domain: automated matches (11)

Human (Homo sapiens) [TaxId: 9606] (11)

1a	d3mo5a_	A:
1b	d3mo5b_	B:
1c	d3mo5c_	C:
1d	d3mo5d_	D:

(no "CATH Domain" information available for 3MO5)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Pre-SET] (11)

Family: Pre-SET (11)

Homo sapiens (Human) (8)

1a	Pre-SET-3mo5D01	D:982-1087
1b	Pre-SET-3mo5D02	D:982-1087
1c	Pre-SET-3mo5D03	D:982-1087
1d	Pre-SET-3mo5D04	D:982-1087

Clan: no clan defined [family: SET] (46)

Family: SET (46)

Homo sapiens (Human) (34)

2a	SET-3mo5D05	D:1106-1204
2b	SET-3mo5D06	D:1106-1204
2c	SET-3mo5D07	D:1106-1204
2d	SET-3mo5D08	D:1106-1204

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (EHMT1_HUMAN | Q9H9B1)

molecular function
	GO:0070742	C2H2 zinc finger domain binding	Interacting selectively and non-covalently with a C2H2-type zinc finger domain of a protein. The C2H2 zinc finger is the classical zinc finger domain, in which two conserved cysteines and histidines co-ordinate a zinc ion.
	GO:0046976	histone methyltransferase activity (H3-K27 specific)	Catalysis of the reaction: S-adenosyl-L-methionine + histone H3 L-lysine (position 27) = S-adenosyl-L-homocysteine + histone H3 N6-methyl-L-lysine (position 27). This reaction is the addition of a methyl group onto lysine at position 27 of the histone H3 protein.
	GO:0046974	histone methyltransferase activity (H3-K9 specific)	Catalysis of the reaction: S-adenosyl-L-methionine + histone H3 L-lysine (position 9) = S-adenosyl-L-homocysteine + histone H3 N6-methyl-L-lysine (position 9). This reaction is the addition of a methyl group onto lysine at position 9 of the histone H3 protein.
	GO:0018024	histone-lysine N-methyltransferase activity	Catalysis of the reaction: S-adenosyl-L-methionine + histone L-lysine = S-adenosyl-L-homocysteine + histone N6-methyl-L-lysine. The methylation of peptidyl-lysine in histones forms N6-methyl-L-lysine, N6,N6-dimethyl-L-lysine and N6,N6,N6-trimethyl-L-lysine derivatives.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008168	methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.
	GO:0002039	p53 binding	Interacting selectively and non-covalently with one of the p53 family of proteins.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0016279	protein-lysine N-methyltransferase activity	Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the epsilon-amino group of a lysine residue in a protein substrate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0006306	DNA methylation	The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.
	GO:0009790	embryo development	The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant.
	GO:0070734	histone H3-K27 methylation	The modification of histone H3 by addition of one or more methyl groups to lysine at position 27 of the histone.
	GO:0051567	histone H3-K9 methylation	The modification of histone H3 by addition of one or more methyl groups to lysine at position 9 of the histone.
	GO:0034968	histone lysine methylation	The modification of a histone by addition of one or more methyl groups to a lysine residue.
	GO:0016571	histone methylation	The modification of histones by addition of methyl groups.
	GO:0032259	methylation	The process in which a methyl group is covalently attached to a molecule.
	GO:0000122	negative regulation of transcription from RNA polymerase II promoter	Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
	GO:0045892	negative regulation of transcription, DNA-templated	Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0018027	peptidyl-lysine dimethylation	The methylation of peptidyl-lysine to form peptidyl-N6,N6-dimethyl-L-lysine.
	GO:0018026	peptidyl-lysine monomethylation	The methylation of peptidyl-lysine to form peptidyl-N6-methyl-L-lysine.
	GO:1901796	regulation of signal transduction by p53 class mediator	Any process that modulates the frequency, rate or extent of signal transduction by p53 class mediator.
	GO:0060992	response to fungicide	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fungicide stimulus. Fungicides are chemicals used to kill fungi.
cellular component
	GO:0005694	chromosome	A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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	2.1.1.43
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3fpd	BIX-01294
3mo0	E11 (BIX ANALOG)
3mo2	E67 (BIX ANALOG)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 22)

Sites (22, 22)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (2, 8)

PROSITE Motifs (2, 8)

Exons (0, 0)

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