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Getting 'Biological Unit' information from database.
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3MO5
Asym. Unit
Info
Asym.Unit (193 KB)
Biol.Unit 1 (50 KB)
Biol.Unit 2 (51 KB)
Biol.Unit 3 (50 KB)
Biol.Unit 4 (49 KB)
Biol.Unit 5 (95 KB)
Biol.Unit 6 (94 KB)
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(1)
Title
:
HUMAN G9A-LIKE (GLP, ALSO KNOWN AS EHMT1) IN COMPLEX WITH INHIBITOR E72
Authors
:
Y. Chang, J. R. Horton, X. Cheng
Date
:
22 Apr 10 (Deposition) - 30 Jun 10 (Release) - 30 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.14
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B (1x)
Biol. Unit 6: C,D (1x)
Keywords
:
Epigenetics, Histone Lysine Methylation, Enzymatic Inhibition, Lysine Mimics, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Chang, T. Ganesh, J. R. Horton, A. Spannhoff, J. Liu, A. Sun, X. Zhang, M. T. Bedford, Y. Shinkai, J. P. Snyder, X. Cheng
Adding A Lysine Mimic In The Design Of Potent Inhibitors Of Histone Lysine Methyltransferases.
J. Mol. Biol. V. 400 1 2010
[
close entry info
]
Hetero Components
(3, 22)
Info
All Hetero Components
1a: 7-[(5-AMINOPENTYL)OXY]-N~4~-[1-(5-... (E72a)
1b: 7-[(5-AMINOPENTYL)OXY]-N~4~-[1-(5-... (E72b)
1c: 7-[(5-AMINOPENTYL)OXY]-N~4~-[1-(5-... (E72c)
1d: 7-[(5-AMINOPENTYL)OXY]-N~4~-[1-(5-... (E72d)
2a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
2b: S-ADENOSYL-L-HOMOCYSTEINE (SAHb)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
3i: ZINC ION (ZNi)
3j: ZINC ION (ZNj)
3k: ZINC ION (ZNk)
3l: ZINC ION (ZNl)
3m: ZINC ION (ZNm)
3n: ZINC ION (ZNn)
3o: ZINC ION (ZNo)
3p: ZINC ION (ZNp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
E72
4
Ligand/Ion
7-[(5-AMINOPENTYL)OXY]-N~4~-[1-(5-AMINOPENTYL)PIPERIDIN-4-YL]-N~2~-[3-(DIMETHYLAMINO)PROPYL]-6-METHOXYQUINAZOLINE-2,4-DIAMINE
2
SAH
2
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
3
ZN
16
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:1031 , CYS A:1044 , CYS A:1074 , CYS A:1078
BINDING SITE FOR RESIDUE ZN A 1
02
AC2
SOFTWARE
ZN A:3 , CYS A:1037 , CYS A:1074 , CYS A:1080 , CYS A:1084
BINDING SITE FOR RESIDUE ZN A 2
03
AC3
SOFTWARE
ZN A:2 , CYS A:1031 , CYS A:1033 , CYS A:1037 , CYS A:1042
BINDING SITE FOR RESIDUE ZN A 3
04
AC4
SOFTWARE
CYS A:1172 , CYS A:1225 , CYS A:1227 , CYS A:1232
BINDING SITE FOR RESIDUE ZN A 4
05
AC5
SOFTWARE
HOH A:245 , HOH A:672 , HOH A:674 , TYR A:1124 , ASP A:1131 , ALA A:1134 , ASP A:1135 , ARG A:1137 , ASP A:1140 , SER A:1141 , LEU A:1143 , ASP A:1145 , TYR A:1211 , ARG A:1214 , PHE A:1215 , LYS A:1219
BINDING SITE FOR RESIDUE E72 A 1236
06
AC6
SOFTWARE
ZN B:7 , CYS B:1031 , CYS B:1044 , CYS B:1074 , CYS B:1078
BINDING SITE FOR RESIDUE ZN B 5
07
AC7
SOFTWARE
CYS B:1037 , CYS B:1074 , CYS B:1080 , CYS B:1084
BINDING SITE FOR RESIDUE ZN B 6
08
AC8
SOFTWARE
ZN B:5 , CYS B:1031 , CYS B:1033 , CYS B:1037 , CYS B:1042
BINDING SITE FOR RESIDUE ZN B 7
09
AC9
SOFTWARE
CYS B:1172 , CYS B:1225 , CYS B:1227 , CYS B:1232
BINDING SITE FOR RESIDUE ZN B 8
10
BC1
SOFTWARE
HOH B:86 , HOH B:197 , ASP B:1131 , ALA B:1134 , ASP B:1135 , VAL B:1136 , ARG B:1137 , ASP B:1140 , SER B:1141 , LEU B:1143 , ASP B:1145 , TYR B:1211 , ARG B:1214 , PHE B:1215 , ILE B:1218 , LYS B:1219 , HOH D:153 , ASP D:1022 , ARG D:1189
BINDING SITE FOR RESIDUE E72 B 2
11
BC2
SOFTWARE
ZN C:2 , CYS C:1031 , CYS C:1044 , CYS C:1074 , CYS C:1078
BINDING SITE FOR RESIDUE ZN C 1
12
BC3
SOFTWARE
ZN C:1 , CYS C:1037 , CYS C:1074 , CYS C:1080 , CYS C:1084
BINDING SITE FOR RESIDUE ZN C 2
13
BC4
SOFTWARE
CYS C:1031 , CYS C:1033 , CYS C:1037 , CYS C:1042
BINDING SITE FOR RESIDUE ZN C 3
14
BC5
SOFTWARE
CYS C:1172 , CYS C:1225 , CYS C:1227 , CYS C:1232
BINDING SITE FOR RESIDUE ZN C 4
15
BC6
SOFTWARE
HOH C:362 , MET C:1105 , GLY C:1106 , TRP C:1107 , TYR C:1142 , ARG C:1166 , ASN C:1169 , HIS C:1170 , TYR C:1211 , CYS C:1225 , ARG C:1226 , CYS C:1227
BINDING SITE FOR RESIDUE SAH C 103
16
BC7
SOFTWARE
HOH A:132 , HOH A:244 , ASP A:1022 , GLU A:1152 , ASP A:1187 , ARG A:1189 , HOH C:172 , HOH C:398 , ASP C:1131 , ALA C:1134 , ASP C:1135 , ASP C:1140 , SER C:1141 , LEU C:1143 , ASP C:1145 , TYR C:1211 , ARG C:1214 , PHE C:1215 , LYS C:1219
BINDING SITE FOR RESIDUE E72 C 1236
17
BC8
SOFTWARE
HOH D:548 , CYS D:1031 , CYS D:1044 , CYS D:1074 , CYS D:1078
BINDING SITE FOR RESIDUE ZN D 5
18
BC9
SOFTWARE
HOH D:548 , CYS D:1037 , CYS D:1074 , CYS D:1080 , CYS D:1084
BINDING SITE FOR RESIDUE ZN D 6
19
CC1
SOFTWARE
CYS D:1031 , CYS D:1033 , CYS D:1037 , CYS D:1042
BINDING SITE FOR RESIDUE ZN D 7
20
CC2
SOFTWARE
CYS D:1172 , CYS D:1225 , CYS D:1227 , CYS D:1232
BINDING SITE FOR RESIDUE ZN D 8
21
CC3
SOFTWARE
MET D:1105 , GLY D:1106 , TRP D:1107 , TYR D:1142 , ARG D:1166 , ASN D:1169 , HIS D:1170 , TYR D:1211 , PHE D:1215 , PHE D:1223 , CYS D:1225 , ARG D:1226
BINDING SITE FOR RESIDUE SAH D 104
22
CC4
SOFTWARE
HOH D:453 , ASP D:1131 , ALA D:1134 , ASP D:1135 , VAL D:1136 , ARG D:1137 , ASP D:1140 , SER D:1141 , LEU D:1143 , ASP D:1145 , TYR D:1211 , ARG D:1214 , PHE D:1215 , ILE D:1218
BINDING SITE FOR RESIDUE E72 D 4
[
close Site info
]
SAPs(SNPs)/Variants
(2, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_069183 (C1044Y, chain A/B/C/D, )
2: VAR_036346 (Y1142F, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_069183
C
1075
Y
EHMT1_HUMAN
Disease (KLESTS)
---
A/B/C/D
C
1044
Y
2
UniProt
VAR_036346
Y
1173
F
EHMT1_HUMAN
Unclassified
---
A/B/C/D
Y
1142
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: PRE_SET (A:1029-1092,B:1029-1092,C:1029-109...)
2: SET (A:1095-1212,B:1095-1212,C:1095-121...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PRE_SET
PS50867
Pre-SET domain profile.
EHMT1_HUMAN
1060-1123
4
A:1029-1092
B:1029-1092
C:1029-1092
D:1029-1092
2
SET
PS50280
SET domain profile.
EHMT1_HUMAN
1126-1243
4
A:1095-1212
B:1095-1212
C:1095-1212
D:1095-1212
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3mo5a_ (A:)
1b: SCOP_d3mo5b_ (B:)
1c: SCOP_d3mo5c_ (C:)
1d: SCOP_d3mo5d_ (D:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
beta-clip
(280)
Superfamily
:
SET domain
(44)
Family
:
automated matches
(11)
Protein domain
:
automated matches
(11)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d3mo5a_
A:
1b
d3mo5b_
B:
1c
d3mo5c_
C:
1d
d3mo5d_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Pre_SET_3mo5D01 (D:982-1087)
1b: PFAM_Pre_SET_3mo5D02 (D:982-1087)
1c: PFAM_Pre_SET_3mo5D03 (D:982-1087)
1d: PFAM_Pre_SET_3mo5D04 (D:982-1087)
2a: PFAM_SET_3mo5D05 (D:1106-1204)
2b: PFAM_SET_3mo5D06 (D:1106-1204)
2c: PFAM_SET_3mo5D07 (D:1106-1204)
2d: PFAM_SET_3mo5D08 (D:1106-1204)
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Clans
(
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(
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(
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(
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Organisms
(
)
(
)
Clan
:
no clan defined [family: Pre-SET]
(11)
Family
:
Pre-SET
(11)
Homo sapiens (Human)
(8)
1a
Pre-SET-3mo5D01
D:982-1087
1b
Pre-SET-3mo5D02
D:982-1087
1c
Pre-SET-3mo5D03
D:982-1087
1d
Pre-SET-3mo5D04
D:982-1087
Clan
:
no clan defined [family: SET]
(46)
Family
:
SET
(46)
Homo sapiens (Human)
(34)
2a
SET-3mo5D05
D:1106-1204
2b
SET-3mo5D06
D:1106-1204
2c
SET-3mo5D07
D:1106-1204
2d
SET-3mo5D08
D:1106-1204
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