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(-) Description

Title :  STRUCTURE OF DROSOPHILA MELANOGASTER CARBOXYPEPTIDASE D ISOFORM 1B SHORT
 
Authors :  S. Tanco, J. L. Arolas, T. Guevara, J. Lorenzo, F. X. Aviles, F. X. Gomis-
Date :  21 Apr 10  (Deposition) - 28 Jul 10  (Release) - 15 Jun 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Catalytic Domain Of Alpha/Beta-Hydrolase Fold, C-Terminal, All-Beta Transthyretin-Like Domain, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Tanco, J. L. Arolas, T. Guevara, J. Lorenzo, F. X. Aviles, F. X. Gomis-Ruth
Structure-Function Analysis Of The Short Splicing Variant Carboxypeptidase Encoded By Drosophila Melanogaster Silver.
J. Mol. Biol. V. 401 465 2010
PubMed-ID: 20600119  |  Reference-DOI: 10.1016/J.JMB.2010.06.035

(-) Compounds

Molecule 1 - LP15968P
    Chains: A, B, C, D
    Engineered: YES
    Expression System: PICHIA PASTORIS
    Expression System Plasmid: PPICZALPHAA
    Expression System Strain: KM71H
    Expression System Taxid: 4922
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-435
    Gene: SVR-RF
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227
    Synonym: METALLOCARBOXYPEPTIDASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 16)

Asymmetric Unit (4, 16)
No.NameCountTypeFull Name
1GEM4Ligand/Ion(2-GUANIDINOETHYLMERCAPTO)SUCCINIC ACID
2GOL4Ligand/IonGLYCEROL
3NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
4ZN4Ligand/IonZINC ION
Biological Unit 1 (3, 5)
No.NameCountTypeFull Name
1GEM1Ligand/Ion(2-GUANIDINOETHYLMERCAPTO)SUCCINIC ACID
2GOL3Ligand/IonGLYCEROL
3NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
4ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1GEM1Ligand/Ion(2-GUANIDINOETHYLMERCAPTO)SUCCINIC ACID
2GOL-1Ligand/IonGLYCEROL
3NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
4ZN-1Ligand/IonZINC ION
Biological Unit 3 (3, 3)
No.NameCountTypeFull Name
1GEM1Ligand/Ion(2-GUANIDINOETHYLMERCAPTO)SUCCINIC ACID
2GOL1Ligand/IonGLYCEROL
3NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
4ZN-1Ligand/IonZINC ION
Biological Unit 4 (2, 2)
No.NameCountTypeFull Name
1GEM1Ligand/Ion(2-GUANIDINOETHYLMERCAPTO)SUCCINIC ACID
2GOL-1Ligand/IonGLYCEROL
3NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
4ZN-1Ligand/IonZINC ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:82 , GLY A:129 , ASN A:133BINDING SITE FOR RESIDUE NAG A 501
02AC2SOFTWAREHIS A:101 , GLU A:104 , HIS A:217 , GEM A:601BINDING SITE FOR RESIDUE ZN A 999
03AC3SOFTWAREHIS A:101 , GLU A:104 , ARG A:165 , ASN A:174 , ARG A:175 , HIS A:217 , GLY A:218 , ASP A:228 , GLY A:279 , TRP A:282 , TYR A:283 , LEU A:285 , THR A:303 , GLU A:305 , ZN A:999BINDING SITE FOR RESIDUE GEM A 601
04AC4SOFTWAREARG A:411BINDING SITE FOR RESIDUE GOL A 801
05AC5SOFTWAREGLN A:330 , GLN D:393BINDING SITE FOR RESIDUE GOL A 803
06AC6SOFTWAREARG B:82 , GLY B:129 , ASN B:133BINDING SITE FOR RESIDUE NAG B 501
07AC7SOFTWAREHIS B:101 , GLU B:104 , HIS B:217 , GEM B:601BINDING SITE FOR RESIDUE ZN B 999
08AC8SOFTWAREHIS B:101 , GLU B:104 , ARG B:165 , ASN B:174 , ARG B:175 , HIS B:217 , ASP B:228 , GLY B:279 , TRP B:282 , TYR B:283 , LEU B:285 , THR B:303 , GLU B:305 , ZN B:999BINDING SITE FOR RESIDUE GEM B 601
09AC9SOFTWAREARG C:82 , GLY C:129 , ASN C:133 , HOH C:1051BINDING SITE FOR RESIDUE NAG C 501
10BC1SOFTWAREHIS C:101 , GLU C:104 , HIS C:217 , GEM C:601BINDING SITE FOR RESIDUE ZN C 999
11BC2SOFTWAREHIS C:101 , GLU C:104 , ARG C:165 , ASN C:174 , ARG C:175 , HIS C:217 , GLY C:218 , ASP C:228 , GLY C:279 , TYR C:283 , LEU C:285 , THR C:303 , GLU C:305 , GOL C:804 , ZN C:999BINDING SITE FOR RESIDUE GEM C 601
12BC3SOFTWAREARG C:165 , TRP C:282 , LYS C:310 , GEM C:601BINDING SITE FOR RESIDUE GOL C 804
13BC4SOFTWAREARG D:82 , ASN D:133BINDING SITE FOR RESIDUE NAG D 501
14BC5SOFTWAREHIS D:101 , GLU D:104 , HIS D:217 , GEM D:601BINDING SITE FOR RESIDUE ZN D 999
15BC6SOFTWAREHIS D:101 , GLU D:104 , ARG D:165 , ASN D:174 , ARG D:175 , HIS D:217 , GLY D:218 , SER D:224 , ASP D:228 , GLY D:279 , TRP D:282 , TYR D:283 , LEU D:285 , GLU D:305 , ZN D:999BINDING SITE FOR RESIDUE GEM D 601

(-) SS Bonds  (12, 12)

Asymmetric Unit
No.Residues
1A:156 -A:309
2A:236 -A:237
3A:268 -A:308
4B:156 -B:309
5B:236 -B:237
6B:268 -B:308
7C:156 -C:309
8C:236 -C:237
9C:268 -C:308
10D:156 -D:309
11D:236 -D:237
12D:268 -D:308

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Pro A:226 -Tyr A:227
2Pro B:226 -Tyr B:227
3Pro C:226 -Tyr C:227
4Pro D:226 -Tyr D:227

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3MN8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3MN8)

(-) Exons   (0, 0)

(no "Exon" information available for 3MN8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:383
 aligned with D3DME3_DROME | D3DME3 from UniProtKB/TrEMBL  Length:435

    Alignment length:391
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418 
         D3DME3_DROME    29 KEDESFLQQPHYASQEQLEDLFAGLEKAYPNQAKVHFLGRSLEGRNLLALQISRNTRSRNLLTPPVKYIANMHGDETVGRQLLVYMAQYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYALSQEGNCESLPNYVGRGNAANIDLNRDFPDRLEQSHVHQLRAQSRQPETAALVNWIVSKPFVLSANFHGGAVVASYPYDNSLAHNECCEESLTPDDRVFKQLAHTYSDNHPIMRKGNNCNDSFSGGITNGAHWYELSGGMQDFNYAFSNCFELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGLVTDASGFPIADANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGYQTSAPQQVRVTNDNQEALRLDFKLAPV 419
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.....hhhhhhhhhhhhhhhh...eeeeeeee.....eeeeeee............eeeee.......hhhhhhhhhhhhhhhhhh..hhhhhhhhhhheeeee...hhhhhhh........hhhhh........hhhhh......--------....hhhhhhhhhhhh.....eeeeee....eeee..................hhhhhhhhhhhhhhh.......hhhhh.hhh.eeehhhhh....hhhhhhhhhh..eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee..........eeee.......ee.....eeee....eeeeeeee.........eeeee.......ee..ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mn8 A  29 KEDESFLQQPHYASQEQLEDLFAGLEKAYPNQAKVHFLGRSLEGRNLLALQISRNTRSRNLLTPPVKYIANMHGDETVGRQLLVYMAQYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYALSQEGNCESLPNYVGRGNAANIDLNRDFPDRLE--------AQSRQPETAALVNWIVSKPFVLSANFHGGAVVASYPYDNSLAHNECCEESLTPDDRVFKQLAHTYSDNHPIMRKGNNCNDSFSGGITNGAHWYELSGGMQDFNYAFSNCFELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGLVTDASGFPIADANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGYQTSAPQQVRVTNDNQEALRLDFKLAPV 419
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178   |     -  |    198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418 
                                                                                                                                                                                   182      191                                                                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:386
 aligned with D3DME3_DROME | D3DME3 from UniProtKB/TrEMBL  Length:435

    Alignment length:393
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417   
         D3DME3_DROME    28 IKEDESFLQQPHYASQEQLEDLFAGLEKAYPNQAKVHFLGRSLEGRNLLALQISRNTRSRNLLTPPVKYIANMHGDETVGRQLLVYMAQYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYALSQEGNCESLPNYVGRGNAANIDLNRDFPDRLEQSHVHQLRAQSRQPETAALVNWIVSKPFVLSANFHGGAVVASYPYDNSLAHNECCEESLTPDDRVFKQLAHTYSDNHPIMRKGNNCNDSFSGGITNGAHWYELSGGMQDFNYAFSNCFELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGLVTDASGFPIADANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGYQTSAPQQVRVTNDNQEALRLDFKLAPVE 420
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhh...eeeeeeee.....eeeeeee............eeeee.......hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhheeeee...hhhhhhhh.......hhhhh........hhhhh........-------...hhhhhhhhhhhh.....eeeeee....eeee..................hhhhhhhhhhhhhhh.............hhh.eeehhhhh....hhhhhhhhhh..eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee..........eeee.......ee.....eeee....eeeeeeee.........eeeee.......ee..ee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mn8 B  28 IKEDESFLQQPHYASQEQLEDLFAGLEKAYPNQAKVHFLGRSLEGRNLLALQISRNTRSRNLLTPPVKYIANMHGDETVGRQLLVYMAQYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYALSQEGNCESLPNYVGRGNAANIDLNRDFPDRLEQS-------QSRQPETAALVNWIVSKPFVLSANFHGGAVVASYPYDNSLAHNECCEESLTPDDRVFKQLAHTYSDNHPIMRKGNNCNDSFSGGITNGAHWYELSGGMQDFNYAFSNCFELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGLVTDASGFPIADANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGYQTSAPQQVRVTNDNQEALRLDFKLAPVE 420
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177      |  -    |  197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417   
                                                                                                                                                                                      184     192                                                                                                                                                                                                                                    


Chain C from PDB  Type:PROTEIN  Length:385
 aligned with D3DME3_DROME | D3DME3 from UniProtKB/TrEMBL  Length:435

    Alignment length:390
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419
         D3DME3_DROME    30 EDESFLQQPHYASQEQLEDLFAGLEKAYPNQAKVHFLGRSLEGRNLLALQISRNTRSRNLLTPPVKYIANMHGDETVGRQLLVYMAQYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYALSQEGNCESLPNYVGRGNAANIDLNRDFPDRLEQSHVHQLRAQSRQPETAALVNWIVSKPFVLSANFHGGAVVASYPYDNSLAHNECCEESLTPDDRVFKQLAHTYSDNHPIMRKGNNCNDSFSGGITNGAHWYELSGGMQDFNYAFSNCFELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGLVTDASGFPIADANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGYQTSAPQQVRVTNDNQEALRLDFKLAPV 419
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhh.....hhhhhhhhhhhhhhhh...eeeeeeee.....eeeeeee............eeeeee......hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhheeeee...hhhhhhhh.......hhhhh........hhhhh.......-----......hhhhhhhhhhhh.....eeeeee....eeee..................hhhhhhhhhhhhhhh.............hhh.eeehhhhh....hhhhhhhhhh..eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee..........eeee.......ee.....eeee....eeeeeeee.........eeeee.......ee..ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3mn8 C  30 EDESFLQQPHYASQEQLEDLFAGLEKAYPNQAKVHFLGRSLEGRNLLALQISRNTRSRNLLTPPVKYIANMHGDETVGRQLLVYMAQYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYALSQEGNCESLPNYVGRGNAANIDLNRDFPDRLEQ-----LRAQSRQPETAALVNWIVSKPFVLSANFHGGAVVASYPYDNSLAHNECCEESLTPDDRVFKQLAHTYSDNHPIMRKGNNCNDSFSGGITNGAHWYELSGGMQDFNYAFSNCFELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGLVTDASGFPIADANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGYQTSAPQQVRVTNDNQEALRLDFKLAPV 419
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179   |   189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419
                                                                                                                                                                                   183   189                                                                                                                                                                                                                                      


Chain D from PDB  Type:PROTEIN  Length:385
 aligned with D3DME3_DROME | D3DME3 from UniProtKB/TrEMBL  Length:435

    Alignment length:394
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416    
         D3DME3_DROME    27 TIKEDESFLQQPHYASQEQLEDLFAGLEKAYPNQAKVHFLGRSLEGRNLLALQISRNTRSRNLLTPPVKYIANMHGDETVGRQLLVYMAQYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYALSQEGNCESLPNYVGRGNAANIDLNRDFPDRLEQSHVHQLRAQSRQPETAALVNWIVSKPFVLSANFHGGAVVASYPYDNSLAHNECCEESLTPDDRVFKQLAHTYSDNHPIMRKGNNCNDSFSGGITNGAHWYELSGGMQDFNYAFSNCFELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGLVTDASGFPIADANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGYQTSAPQQVRVTNDNQEALRLDFKLAPVE 420
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------------------Peptidase_M14-3mn8D01 D:46-327                                                                                                                                                                                                                                                            ----------CarboxypepD_reg-3mn8D05 D:338-417                                               --- Pfam domains (1)
           Pfam domains (2) -------------------Peptidase_M14-3mn8D02 D:46-327                                                                                                                                                                                                                                                            ----------CarboxypepD_reg-3mn8D06 D:338-417                                               --- Pfam domains (2)
           Pfam domains (3) -------------------Peptidase_M14-3mn8D03 D:46-327                                                                                                                                                                                                                                                            ----------CarboxypepD_reg-3mn8D07 D:338-417                                               --- Pfam domains (3)
           Pfam domains (4) -------------------Peptidase_M14-3mn8D04 D:46-327                                                                                                                                                                                                                                                            ----------CarboxypepD_reg-3mn8D08 D:338-417                                               --- Pfam domains (4)
         Sec.struct. author .....hhhhh.....hhhhhhhhhhhhhhhh...eeeeeeee.....eeeeeee............eeeeee......hhhhhhhhhhhhhhhhhh..hhhhhhhhhhheeeee...hhhhhhhh....................hhhhh.....---------....hhhhhhhhhhhh.....eeeeee....eeee..................hhhhhhhhhhhhhhh..hhhhh......hhh.eeehhhhh....hhhhhhhhhh..eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee..........eeee.......ee.....eeee....eeeeeeee.........eeeee.......ee..ee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mn8 D  27 TIKEDESFLQQPHYASQEQLEDLFAGLEKAYPNQAKVHFLGRSLEGRNLLALQISRNTRSRNLLTPPVKYIANMHGDETVGRQLLVYMAQYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYALSQEGNCESLPNYVGRGNAANIDLNRDFPDRL---------AQSRQPETAALVNWIVSKPFVLSANFHGGAVVASYPYDNSLAHNECCEESLTPDDRVFKQLAHTYSDNHPIMRKGNNCNDSFSGGITNGAHWYELSGGMQDFNYAFSNCFELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGLVTDASGFPIADANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGYQTSAPQQVRVTNDNQEALRLDFKLAPVE 420
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176    |    -    |  196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416    
                                                                                                                                                                                    181       191
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3MN8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3MN8)

(-) Pfam Domains  (2, 8)

Asymmetric Unit
(-)
Clan: Peptidase_MH (119)
(-)
Clan: Transthyretin (88)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (D3DME3_DROME | D3DME3)
molecular function
    GO:0004180    carboxypeptidase activity    Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004181    metallocarboxypeptidase activity    Catalysis of the hydrolysis of C-terminal amino acid residues from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.

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  Cis Peptide Bonds
    Pro A:226 - Tyr A:227   [ RasMol ]  
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(-) Related Entries Specified in the PDB File

1h8l STRUCTURE OF DUCK CARBOXYPEPTIDASE D DOMAIN II IN COMPLEX WITH GEMSA
1qmu STRUCTURE OF DUCK CARBOXYPEPTIDASE D DOMAIN II