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3MN8
Biol. Unit 2
Info
Asym.Unit (532 KB)
Biol.Unit 1 (135 KB)
Biol.Unit 2 (135 KB)
Biol.Unit 3 (135 KB)
Biol.Unit 4 (135 KB)
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(1)
Title
:
STRUCTURE OF DROSOPHILA MELANOGASTER CARBOXYPEPTIDASE D ISOFORM 1B SHORT
Authors
:
S. Tanco, J. L. Arolas, T. Guevara, J. Lorenzo, F. X. Aviles, F. X. Gomis-
Date
:
21 Apr 10 (Deposition) - 28 Jul 10 (Release) - 15 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Catalytic Domain Of Alpha/Beta-Hydrolase Fold, C-Terminal, All-Beta Transthyretin-Like Domain, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Tanco, J. L. Arolas, T. Guevara, J. Lorenzo, F. X. Aviles, F. X. Gomis-Ruth
Structure-Function Analysis Of The Short Splicing Variant Carboxypeptidase Encoded By Drosophila Melanogaster Silver.
J. Mol. Biol. V. 401 465 2010
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: (2-GUANIDINOETHYLMERCAPTO)SUCCINIC... (GEMa)
1b: (2-GUANIDINOETHYLMERCAPTO)SUCCINIC... (GEMb)
1c: (2-GUANIDINOETHYLMERCAPTO)SUCCINIC... (GEMc)
1d: (2-GUANIDINOETHYLMERCAPTO)SUCCINIC... (GEMd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
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No.
Name
Count
Type
Full Name
1
GEM
1
Ligand/Ion
(2-GUANIDINOETHYLMERCAPTO)SUCCINIC ACID
2
GOL
-1
Ligand/Ion
GLYCEROL
3
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(3, 3)
Info
All Sites
1: AC6 (SOFTWARE)
2: AC7 (SOFTWARE)
3: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC6
SOFTWARE
ARG B:82 , GLY B:129 , ASN B:133
BINDING SITE FOR RESIDUE NAG B 501
2
AC7
SOFTWARE
HIS B:101 , GLU B:104 , HIS B:217 , GEM B:601
BINDING SITE FOR RESIDUE ZN B 999
3
AC8
SOFTWARE
HIS B:101 , GLU B:104 , ARG B:165 , ASN B:174 , ARG B:175 , HIS B:217 , ASP B:228 , GLY B:279 , TRP B:282 , TYR B:283 , LEU B:285 , THR B:303 , GLU B:305 , ZN B:999
BINDING SITE FOR RESIDUE GEM B 601
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Peptidase_M14_3mn8D01 (D:46-327)
1b: PFAM_Peptidase_M14_3mn8D02 (D:46-327)
1c: PFAM_Peptidase_M14_3mn8D03 (D:46-327)
1d: PFAM_Peptidase_M14_3mn8D04 (D:46-327)
2a: PFAM_CarboxypepD_reg_3mn8D05 (D:338-417)
2b: PFAM_CarboxypepD_reg_3mn8D06 (D:338-417)
2c: PFAM_CarboxypepD_reg_3mn8D07 (D:338-417)
2d: PFAM_CarboxypepD_reg_3mn8D08 (D:338-417)
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Clans
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(
)
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(
)
Clan
:
Peptidase_MH
(119)
Family
:
Peptidase_M14
(33)
Drosophila melanogaster (Fruit fly)
(1)
1a
Peptidase_M14-3mn8D01
D:46-327
1b
Peptidase_M14-3mn8D02
D:46-327
1c
Peptidase_M14-3mn8D03
D:46-327
1d
Peptidase_M14-3mn8D04
D:46-327
Clan
:
Transthyretin
(88)
Family
:
CarboxypepD_reg
(3)
Drosophila melanogaster (Fruit fly)
(1)
2a
CarboxypepD_reg-3mn8D05
D:338-417
2b
CarboxypepD_reg-3mn8D06
D:338-417
2c
CarboxypepD_reg-3mn8D07
D:338-417
2d
CarboxypepD_reg-3mn8D08
D:338-417
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Show PDB file:
Asym.Unit (532 KB)
Header - Asym.Unit
Biol.Unit 1 (135 KB)
Header - Biol.Unit 1
Biol.Unit 2 (135 KB)
Header - Biol.Unit 2
Biol.Unit 3 (135 KB)
Header - Biol.Unit 3
Biol.Unit 4 (135 KB)
Header - Biol.Unit 4
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