3MLP - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   EARLY B-CELL FACTOR 1 (EBF1) BOUND TO DNA

Authors :   N. Treiber, T. Treiber, G. Zocher, R. Grosschedl

Date :   17 Apr 10 (Deposition) - 01 Dec 10 (Release) - 23 Dec 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: E,F,G,H  (1x)

Keywords :   Transcription Factor, Pseudo-Ig-Fold, Tig-Domain, Ipt-Domain, Helix- Loop-Helix, Dna, Zinc-Finger, Zinc-Knuckle, Transcription-Dna Complex, Ebf, Ebf-1 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Treiber, T. Treiber, G. Zocher, R. Grosschedl
Structure Of An Ebf1:Dna Complex Reveals Unusual Dna Recognition And Structural Homology With Rel Proteins
Genes Dev. V. 24 2270 2010
PubMed-ID: 20876732 | Reference-DOI: 10.1101/GAD.1976610

Molecule 1 - TRANSCRIPTION FACTOR COE1
	Chains	:	A, B, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET23D
	Expression System Strain	:	ROSETTA
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	DNA BINDING DOMAIN
	Gene	:	EBF1
	Mutation	:	YES
	Organism Common	:	MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Synonym	:	EBF1, O/E-1, OE-1, EARLY B-CELL FACTOR

*Molecule 2 - DNA (5'- D(CPTPTPTPAPTPTPCPCPCPAPTPGPGPGPAPAPTPAPAPAPG)- 3')*
	Chains	:	C, D, G, H
	Engineered	:	YES
	Organism Scientific	:	SYNTHETIC CONSTRUCT
	Organism Taxid	:	32630
	Other Details	:	SYNTHETIC OLIGONUCLEOTIDE
	Synthetic	:	YES

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:					E	F	G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 9)

No.	Name	Count	Type	Full Name
1	CIT	5	Ligand/Ion	CITRIC ACID
2	ZN	4	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 3)

No.	Name	Count	Type	Full Name
1	CIT	3	Ligand/Ion	CITRIC ACID
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	CIT	2	Ligand/Ion	CITRIC ACID
2	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:157 , CYS A:161 , CYS A:164 , CYS A:170	BINDING SITE FOR RESIDUE ZN A 501
2	AC2	SOFTWARE	HIS A:53 , PHE A:54 , ALA A:227 , VAL A:228 , HOH A:431 , HOH A:448 , HOH A:453 , LYS E:258 , ASP E:278 , HIS E:301	BINDING SITE FOR RESIDUE CIT A 1
3	AC3	SOFTWARE	VAL A:90 , GLY A:91 , LYS A:97 , HIS A:109 , ARG A:111	BINDING SITE FOR RESIDUE CIT A 3
4	AC4	SOFTWARE	HIS B:157 , CYS B:161 , CYS B:164 , CYS B:170	BINDING SITE FOR RESIDUE ZN B 501
5	AC5	SOFTWARE	GLU A:264 , GLY A:265 , TRP A:266 , THR A:338 , PHE B:349 , GLU B:369 , HOH B:442	BINDING SITE FOR RESIDUE CIT B 4
6	AC6	SOFTWARE	HIS E:157 , CYS E:161 , CYS E:164 , CYS E:170	BINDING SITE FOR RESIDUE ZN E 501
7	AC7	SOFTWARE	LYS A:258 , ASP A:278 , HOH E:21 , ALA E:52 , HIS E:53 , PHE E:54 , ALA E:227 , VAL E:228	BINDING SITE FOR RESIDUE CIT E 2
8	AC8	SOFTWARE	HIS F:157 , CYS F:161 , CYS F:164 , CYS F:170	BINDING SITE FOR RESIDUE ZN F 501
9	AC9	SOFTWARE	VAL F:36 , LEU F:37 , ASP F:38 , ARG F:121 , THR F:122 , GLU F:123	BINDING SITE FOR RESIDUE CIT F 6

(no "SS Bond" information available for 3MLP)

Asymmetric Unit

No.	Residues
1	Ser A:261	-	Pro A:262
2	Ser B:261	-	Pro B:262
3	Ser E:261	-	Pro E:262
4	Ser F:261	-	Pro F:262

(no "SAP(SNP)/Variant" information available for 3MLP)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COE	PS01345	COE family signature.	COE1_MOUSE	161-170	4	A:161-170 B:161-170 E:161-170 F:161-170

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COE	PS01345	COE family signature.	COE1_MOUSE	161-170	2	A:161-170 B:161-170 - -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COE	PS01345	COE family signature.	COE1_MOUSE	161-170	2	- - E:161-170 F:161-170

(no "Exon" information available for 3MLP)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:337
 aligned with COE1_MOUSE | Q07802 from UniProtKB/Swiss-Prot  Length:591

    Alignment length:358
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385        
           COE1_MOUSE    36 VLDANTAAQSGVGLARAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVGFVEKEKEANSEKTNNGIHYRLQLLYSNGIRTEQDFYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEGTPSYLEHATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGRFIYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGMP 393
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhh..eeeeeeee....eee...eeeeeeeeee......eeeeeeeeee.hhhhh.........eeeeeeee.....eeeeeeeeeeee..............hhhhh..eehhhhhhhhhhh...hhhhhhh....eee...eeeeeeee................eeeeee..........eeeeeeeee................-------....eeee....eee.....eeeeeee......eeee..eee.eeeee..eeeee.......eeeeeeeee..eee.....eeeeee---..............-----------hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------COE       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mlp A  36 VLDANTAAQSGVGLARAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVGFVEKEKEANSEKTNNGIHYRLQLLYSNGIRTEQDFYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSE-------AATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGRFIYT---EPTIDYGFQRLQKV-----------PKEVILKRAADLVEALYGMP 386
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245     |   -   |   258       268       278       288       298       308       318       328       338   |   348      |  -       368       378        
                                                                                                                                                                                                                                                 251     252                                                                                   338 342          355         367

Chain B from PDB  Type:PROTEIN  Length:332
 aligned with COE1_MOUSE | Q07802 from UniProtKB/Swiss-Prot  Length:591

    Alignment length:355
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385     
           COE1_MOUSE    36 VLDANTAAQSGVGLARAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVGFVEKEKEANSEKTNNGIHYRLQLLYSNGIRTEQDFYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEGTPSYLEHATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGRFIYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALY 390
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhh...eeeeeeee....eee...eeeeeeeeee......eeeeeeeeee...............eeeeeeee.....eeeeeeeeeeee..............hhhhh..ee.......hhhhh..hhhhhhh....eee...eeeeeeee................eeeeee..........eeeeeeeee.......----------------....eeeeee..eee.....eeeeeee......eeee..ee.eeeeee..eeeee.......eeeeeeeee..eee.....eeeeee.....hhhhhhhhhhhhh.-------.....hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------COE       ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mlp B  36 VLDANTAAQSGVGLARAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVGFVEKEKEANSEKTNNGIHYRLQLLYSNGIRTEQDFYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGR----------------AATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGRFIYTALNEPTIDYGFQRLQKVIP-------RLPKEVILKRAADLVEALY 383
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235      |  -         -   |   258       268       278       288       298       308       318       328       338       348        |-      |368       378     
                                                                                                                                                                                                                                        242              252                                                                                                      357     365

Chain C from PDB  Type:DNA  Length:22
                                                      
                 3mlp C   1 CTTTATTCCCATGGGAATAAAG  22
                                    10        20

Chain D from PDB  Type:DNA  Length:22
                                                      
                 3mlp D   1 CTTTATTCCCATGGGAATAAAG  22
                                    10        20

Chain E from PDB  Type:PROTEIN  Length:303
 aligned with COE1_MOUSE | Q07802 from UniProtKB/Swiss-Prot  Length:591

    Alignment length:310
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345
           COE1_MOUSE    36 VLDANTAAQSGVGLARAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVGFVEKEKEANSEKTNNGIHYRLQLLYSNGIRTEQDFYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEGTPSYLEHATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGRFIYT 345
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhh..eeeeeeee....eee...eeeeeeeeee......eeeeeeeeee.hhhhh.........eeeeeeee.....eeeeeeeeeeee..............hhhhh..eehhhhhhhhhhh...hhhhhhh....eee...eeeeeeee................eeeeee..........eeeeeeeee............hhhh-------hh..eeeeee..ee......eeeeeee......eeee..eee.eeeee..eeeee.......eeeeeeeee..eee.....eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------COE       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mlp E  36 VLDANTAAQSGVGLARAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVGFVEKEKEANSEKTNNGIHYRLQLLYSNGIRTEQDFYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSE-------AATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGRFIYT 338
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245     |   -   |   258       268       278       288       298       308       318       328       338
                                                                                                                                                                                                                                                 251     252

Chain F from PDB  Type:PROTEIN  Length:298
 aligned with COE1_MOUSE | Q07802 from UniProtKB/Swiss-Prot  Length:591

    Alignment length:313
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345   
           COE1_MOUSE    36 VLDANTAAQSGVGLARAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVGFVEKEKEANSEKTNNGIHYRLQLLYSNGIRTEQDFYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEGTPSYLEHATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGRFIYTALN 348
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh.....eeeeee....eee....eeeeeeee.......eeeeeeeeee.hhhhhhhhh.....eeeeeeee.....eeeeeeeeeeee..............hhhhh..ee.hhhhhhhhhh...hhhhhhh....eee...eeeeeeee................eeeeee..........eeeeeeeee......---------------......eeeeee..eee.....eeeeeee......eeee..ee.eeeeee..eeeee.......eeeeeeeee..eee.....eeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------COE       ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mlp F  36 VLDANTAAQSGVGLARAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVGFVEKEKEANSEKTNNGIHYRLQLLYSNGIRTEQDFYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHG---------------SEAATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGRFIYTALN 341
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235     |   -         - |     258       268       278       288       298       308       318       328       338   
                                                                                                                                                                                                                                       241             250

Chain G from PDB  Type:DNA  Length:22
                                                      
                 3mlp G   1 CTTTATTCCCATGGGAATAAAG  22
                                    10        20

Chain H from PDB  Type:DNA  Length:22
                                                      
                 3mlp H   1 CTTTATTCCCATGGGAATAAAG  22
                                    10        20

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3MLP)

(no "CATH Domain" information available for 3MLP)

(no "Pfam Domain" information available for 3MLP)

Asymmetric Unit(hide GO term definitions)

Chain A,B,E,F (COE1_MOUSE | Q07802)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0000978	RNA polymerase II core promoter proximal region sequence-specific DNA binding	Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0003700	transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
	GO:0001077	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II) in order to activate or increase the frequency, rate or extent of transcription from the RNAP II promoter.
biological process
	GO:0007275	multicellular organism development	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
	GO:0045944	positive regulation of transcription from RNA polymerase II promoter	Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
	GO:0045893	positive regulation of transcription, DNA-templated	Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006366	transcription from RNA polymerase II promoter	The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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	Cis Peptide Bonds
		Ser A:261 - Pro A:262	[ RasMol ]
		Ser B:261 - Pro B:262	[ RasMol ]
		Ser E:261 - Pro E:262	[ RasMol ]
		Ser F:261 - Pro F:262	[ RasMol ]

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	3mlp
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	COE1_MOUSE \| Q07802	:	3mln 3mlo

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 9)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

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Gene Ontology (14, 14)

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