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Sequence, Chains, Asymmetric and Biological Units

Title EARLY B-CELL FACTOR 1 (EBF1) BOUND TO DNA
Keywords TRANSCRIPTION FACTOR, PSEUDO-IG-FOLD, TIG-DOMAIN, IPT-DOMAIN LOOP-HELIX, DNA, ZINC-FINGER, ZINC-KNUCKLE, TRANSCRIPTION-D COMPLEX, EBF, EBF-1
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3MLP     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   TRANSCRIPTION FACTOR COE1  A 337 2626 0
2  Protein   TRANSCRIPTION FACTOR COE1  B 332 2591 0
3  Other macromolecule   DNA (5'- D(*CP*TP*TP*TP*AP*TP*TP*CP*CP*CP*AP*TP*GP*GP*GP*AP*AP*TP*AP 3')  C 22 448 0
4  Other macromolecule   DNA (5'- D(*CP*TP*TP*TP*AP*TP*TP*CP*CP*CP*AP*TP*GP*GP*GP*AP*AP*TP*AP 3')  D 22 448 0
5  Protein   TRANSCRIPTION FACTOR COE1  E 303 2399 0
6  Protein   TRANSCRIPTION FACTOR COE1  F 298 2334 0
7  Other macromolecule   DNA (5'- D(*CP*TP*TP*TP*AP*TP*TP*CP*CP*CP*AP*TP*GP*GP*GP*AP*AP*TP*AP 3')  G 22 448 0
8  Other macromolecule   DNA (5'- D(*CP*TP*TP*TP*AP*TP*TP*CP*CP*CP*AP*TP*GP*GP*GP*AP*AP*TP*AP 3')  H 22 448 0
9  Ligand   TRANSCRIPTION FACTOR COE1  A 3 0 27
10  Ligand   TRANSCRIPTION FACTOR COE1  B 2 0 14
11  Ligand   TRANSCRIPTION FACTOR COE1  E 2 0 14
12  Ligand   TRANSCRIPTION FACTOR COE1  F 2 0 14
13 Water     150 0 150
total       1517 11742 219
Proteins
Unit 1 VAL36 LEU37 ASP38 ALA39 ASN40 THR41 ALA42 ALA43 GLN44 SER45 GLY46 VAL47 GLY48 LEU49 ALA50 ARG51 ALA52 HIS53 PHE54 GLU55 LYS56 GLN57 PRO58 PRO59 SER60 ASN61 LEU62 ARG63 LYS64 SER65 ASN66 PHE67 PHE68 HIS69 PHE70 VAL71 LEU72 ALA73 LEU74 TYR75 ASP76 ARG77 GLN78 GLY79 GLN80 PRO81 VAL82 GLU83 ILE84 GLU85 ARG86 THR87 ALA88 PHE89 VAL90 GLY91 PHE92 VAL93 GLU94 LYS95 GLU96 LYS97 GLU98 ALA99 ASN100 SER101 GLU102 LYS103 THR104 ASN105 ASN106 GLY107 ILE108 HIS109 TYR110 ARG111 LEU112 GLN113 LEU114 LEU115 TYR116 SER117 ASN118 GLY119 ILE120 ARG121 THR122 GLU123 GLN124 ASP125 PHE126 TYR127 VAL128 ARG129 LEU130 ILE131 ASP132 SER133 MET134 THR135 LYS136 GLN137 ALA138 ILE139 VAL140 TYR141 GLU142 GLY143 GLN144 ASP145 LYS146 ASN147 PRO148 GLU149 MET150 CYS151 ARG152 VAL153 LEU154 LEU155 THR156 HIS157 GLU158 ILE159 MET160 CYS161 SER162 ARG163 CYS164 CYS165 ASP166 LYS167 LYS168 SER169 CYS170 GLY171 ASN172 ARG173 ASN174 GLU175 THR176 PRO177 SER178 ASP179 PRO180 VAL181 ILE182 ILE183 ASP184 ARG185 PHE186 PHE187 LEU188 LYS189 PHE190 PHE191 LEU192 LYS193 CYS194 ASN195 GLN196 ASN197 CYS198 LEU199 LYS200 ASN201 ALA202 GLY203 ASN204 PRO205 ARG206 ASP207 MET208 ARG209 ARG210 PHE211 GLN212 VAL213 VAL214 VAL215 SER216 THR217 THR218 VAL219 ASN220 VAL221 ASP222 GLY223 HIS224 VAL225 LEU226 ALA227 VAL228 SER229 ASP230 ASN231 MET232 PHE233 VAL234 HIS235 ASN236 ASN237 SER238 LYS239 HIS240 GLY241 ARG242 ARG243 ALA244 ARG245 ARG246 LEU247 ASP248 PRO249 SER250 GLU251 ALA252 ALA253 THR254 PRO255 CYS256 ILE257 LYS258 ALA259 ILE260 SER261 PRO262 SER263 GLU264 GLY265 TRP266 THR267 THR268 GLY269 GLY270 ALA271 THR272 VAL273 ILE274 ILE275 ILE276 GLY277 ASP278 ASN279 PHE280 PHE281 ASP282 GLY283 LEU284 GLN285 VAL286 ILE287 PHE288 GLY289 THR290 MET291 LEU292 VAL293 TRP294 SER295 GLU296 LEU297 ILE298 THR299 PRO300 HIS301 ALA302 ILE303 ARG304 VAL305 GLN306 THR307 PRO308 PRO309 ARG310 HIS311 ILE312 PRO313 GLY314 VAL315 VAL316 GLU317 VAL318 THR319 LEU320 SER321 TYR322 LYS323 SER324 LYS325 GLN326 PHE327 CYS328 LYS329 GLY330 THR331 PRO332 GLY333 ARG334 PHE335 ILE336 TYR337 THR338 GLU342 PRO343 THR344 ILE345 ASP346 TYR347 GLY348 PHE349 GLN350 ARG351 LEU352 GLN353 LYS354 VAL355 PRO367 LYS368 GLU369 VAL370 ILE371 LEU372 LYS373 ARG374 ALA375 ALA376 ASP377 LEU378 VAL379 GLU380 ALA381 LEU382 TYR383 GLY384 MET385 PRO386
Unit 2 VAL36 LEU37 ASP38 ALA39 ASN40 THR41 ALA42 ALA43 GLN44 SER45 GLY46 VAL47 GLY48 LEU49 ALA50 ARG51 ALA52 HIS53 PHE54 GLU55 LYS56 GLN57 PRO58 PRO59 SER60 ASN61 LEU62 ARG63 LYS64 SER65 ASN66 PHE67 PHE68 HIS69 PHE70 VAL71 LEU72 ALA73 LEU74 TYR75 ASP76 ARG77 GLN78 GLY79 GLN80 PRO81 VAL82 GLU83 ILE84 GLU85 ARG86 THR87 ALA88 PHE89 VAL90 GLY91 PHE92 VAL93 GLU94 LYS95 GLU96 LYS97 GLU98 ALA99 ASN100 SER101 GLU102 LYS103 THR104 ASN105 ASN106 GLY107 ILE108 HIS109 TYR110 ARG111 LEU112 GLN113 LEU114 LEU115 TYR116 SER117 ASN118 GLY119 ILE120 ARG121 THR122 GLU123 GLN124 ASP125 PHE126 TYR127 VAL128 ARG129 LEU130 ILE131 ASP132 SER133 MET134 THR135 LYS136 GLN137 ALA138 ILE139 VAL140 TYR141 GLU142 GLY143 GLN144 ASP145 LYS146 ASN147 PRO148 GLU149 MET150 CYS151 ARG152 VAL153 LEU154 LEU155 THR156 HIS157 GLU158 ILE159 MET160 CYS161 SER162 ARG163 CYS164 CYS165 ASP166 LYS167 LYS168 SER169 CYS170 GLY171 ASN172 ARG173 ASN174 GLU175 THR176 PRO177 SER178 ASP179 PRO180 VAL181 ILE182 ILE183 ASP184 ARG185 PHE186 PHE187 LEU188 LYS189 PHE190 PHE191 LEU192 LYS193 CYS194 ASN195 GLN196 ASN197 CYS198 LEU199 LYS200 ASN201 ALA202 GLY203 ASN204 PRO205 ARG206 ASP207 MET208 ARG209 ARG210 PHE211 GLN212 VAL213 VAL214 VAL215 SER216 THR217 THR218 VAL219 ASN220 VAL221 ASP222 GLY223 HIS224 VAL225 LEU226 ALA227 VAL228 SER229 ASP230 ASN231 MET232 PHE233 VAL234 HIS235 ASN236 ASN237 SER238 LYS239 HIS240 GLY241 ARG242 ALA252 ALA253 THR254 PRO255 CYS256 ILE257 LYS258 ALA259 ILE260 SER261 PRO262 SER263 GLU264 GLY265 TRP266 THR267 THR268 GLY269 GLY270 ALA271 THR272 VAL273 ILE274 ILE275 ILE276 GLY277 ASP278 ASN279 PHE280 PHE281 ASP282 GLY283 LEU284 GLN285 VAL286 ILE287 PHE288 GLY289 THR290 MET291 LEU292 VAL293 TRP294 SER295 GLU296 LEU297 ILE298 THR299 PRO300 HIS301 ALA302 ILE303 ARG304 VAL305 GLN306 THR307 PRO308 PRO309 ARG310 HIS311 ILE312 PRO313 GLY314 VAL315 VAL316 GLU317 VAL318 THR319 LEU320 SER321 TYR322 LYS323 SER324 LYS325 GLN326 PHE327 CYS328 LYS329 GLY330 THR331 PRO332 GLY333 ARG334 PHE335 ILE336 TYR337 THR338 ALA339 LEU340 ASN341 GLU342 PRO343 THR344 ILE345 ASP346 TYR347 GLY348 PHE349 GLN350 ARG351 LEU352 GLN353 LYS354 VAL355 ILE356 PRO357 ARG365 LEU366 PRO367 LYS368 GLU369 VAL370 ILE371 LEU372 LYS373 ARG374 ALA375 ALA376 ASP377 LEU378 VAL379 GLU380 ALA381 LEU382 TYR383
Unit 5 VAL36 LEU37 ASP38 ALA39 ASN40 THR41 ALA42 ALA43 GLN44 SER45 GLY46 VAL47 GLY48 LEU49 ALA50 ARG51 ALA52 HIS53 PHE54 GLU55 LYS56 GLN57 PRO58 PRO59 SER60 ASN61 LEU62 ARG63 LYS64 SER65 ASN66 PHE67 PHE68 HIS69 PHE70 VAL71 LEU72 ALA73 LEU74 TYR75 ASP76 ARG77 GLN78 GLY79 GLN80 PRO81 VAL82 GLU83 ILE84 GLU85 ARG86 THR87 ALA88 PHE89 VAL90 GLY91 PHE92 VAL93 GLU94 LYS95 GLU96 LYS97 GLU98 ALA99 ASN100 SER101 GLU102 LYS103 THR104 ASN105 ASN106 GLY107 ILE108 HIS109 TYR110 ARG111 LEU112 GLN113 LEU114 LEU115 TYR116 SER117 ASN118 GLY119 ILE120 ARG121 THR122 GLU123 GLN124 ASP125 PHE126 TYR127 VAL128 ARG129 LEU130 ILE131 ASP132 SER133 MET134 THR135 LYS136 GLN137 ALA138 ILE139 VAL140 TYR141 GLU142 GLY143 GLN144 ASP145 LYS146 ASN147 PRO148 GLU149 MET150 CYS151 ARG152 VAL153 LEU154 LEU155 THR156 HIS157 GLU158 ILE159 MET160 CYS161 SER162 ARG163 CYS164 CYS165 ASP166 LYS167 LYS168 SER169 CYS170 GLY171 ASN172 ARG173 ASN174 GLU175 THR176 PRO177 SER178 ASP179 PRO180 VAL181 ILE182 ILE183 ASP184 ARG185 PHE186 PHE187 LEU188 LYS189 PHE190 PHE191 LEU192 LYS193 CYS194 ASN195 GLN196 ASN197 CYS198 LEU199 LYS200 ASN201 ALA202 GLY203 ASN204 PRO205 ARG206 ASP207 MET208 ARG209 ARG210 PHE211 GLN212 VAL213 VAL214 VAL215 SER216 THR217 THR218 VAL219 ASN220 VAL221 ASP222 GLY223 HIS224 VAL225 LEU226 ALA227 VAL228 SER229 ASP230 ASN231 MET232 PHE233 VAL234 HIS235 ASN236 ASN237 SER238 LYS239 HIS240 GLY241 ARG242 ARG243 ALA244 ARG245 ARG246 LEU247 ASP248 PRO249 SER250 GLU251 ALA252 ALA253 THR254 PRO255 CYS256 ILE257 LYS258 ALA259 ILE260 SER261 PRO262 SER263 GLU264 GLY265 TRP266 THR267 THR268 GLY269 GLY270 ALA271 THR272 VAL273 ILE274 ILE275 ILE276 GLY277 ASP278 ASN279 PHE280 PHE281 ASP282 GLY283 LEU284 GLN285 VAL286 ILE287 PHE288 GLY289 THR290 MET291 LEU292 VAL293 TRP294 SER295 GLU296 LEU297 ILE298 THR299 PRO300 HIS301 ALA302 ILE303 ARG304 VAL305 GLN306 THR307 PRO308 PRO309 ARG310 HIS311 ILE312 PRO313 GLY314 VAL315 VAL316 GLU317 VAL318 THR319 LEU320 SER321 TYR322 LYS323 SER324 LYS325 GLN326 PHE327 CYS328 LYS329 GLY330 THR331 PRO332 GLY333 ARG334 PHE335 ILE336 TYR337 THR338
Unit 6 VAL36 LEU37 ASP38 ALA39 ASN40 THR41 ALA42 ALA43 GLN44 SER45 GLY46 VAL47 GLY48 LEU49 ALA50 ARG51 ALA52 HIS53 PHE54 GLU55 LYS56 GLN57 PRO58 PRO59 SER60 ASN61 LEU62 ARG63 LYS64 SER65 ASN66 PHE67 PHE68 HIS69 PHE70 VAL71 LEU72 ALA73 LEU74 TYR75 ASP76 ARG77 GLN78 GLY79 GLN80 PRO81 VAL82 GLU83 ILE84 GLU85 ARG86 THR87 ALA88 PHE89 VAL90 GLY91 PHE92 VAL93 GLU94 LYS95 GLU96 LYS97 GLU98 ALA99 ASN100 SER101 GLU102 LYS103 THR104 ASN105 ASN106 GLY107 ILE108 HIS109 TYR110 ARG111 LEU112 GLN113 LEU114 LEU115 TYR116 SER117 ASN118 GLY119 ILE120 ARG121 THR122 GLU123 GLN124 ASP125 PHE126 TYR127 VAL128 ARG129 LEU130 ILE131 ASP132 SER133 MET134 THR135 LYS136 GLN137 ALA138 ILE139 VAL140 TYR141 GLU142 GLY143 GLN144 ASP145 LYS146 ASN147 PRO148 GLU149 MET150 CYS151 ARG152 VAL153 LEU154 LEU155 THR156 HIS157 GLU158 ILE159 MET160 CYS161 SER162 ARG163 CYS164 CYS165 ASP166 LYS167 LYS168 SER169 CYS170 GLY171 ASN172 ARG173 ASN174 GLU175 THR176 PRO177 SER178 ASP179 PRO180 VAL181 ILE182 ILE183 ASP184 ARG185 PHE186 PHE187 LEU188 LYS189 PHE190 PHE191 LEU192 LYS193 CYS194 ASN195 GLN196 ASN197 CYS198 LEU199 LYS200 ASN201 ALA202 GLY203 ASN204 PRO205 ARG206 ASP207 MET208 ARG209 ARG210 PHE211 GLN212 VAL213 VAL214 VAL215 SER216 THR217 THR218 VAL219 ASN220 VAL221 ASP222 GLY223 HIS224 VAL225 LEU226 ALA227 VAL228 SER229 ASP230 ASN231 MET232 PHE233 VAL234 HIS235 ASN236 ASN237 SER238 LYS239 HIS240 GLY241 SER250 GLU251 ALA252 ALA253 THR254 PRO255 CYS256 ILE257 LYS258 ALA259 ILE260 SER261 PRO262 SER263 GLU264 GLY265 TRP266 THR267 THR268 GLY269 GLY270 ALA271 THR272 VAL273 ILE274 ILE275 ILE276 GLY277 ASP278 ASN279 PHE280 PHE281 ASP282 GLY283 LEU284 GLN285 VAL286 ILE287 PHE288 GLY289 THR290 MET291 LEU292 VAL293 TRP294 SER295 GLU296 LEU297 ILE298 THR299 PRO300 HIS301 ALA302 ILE303 ARG304 VAL305 GLN306 THR307 PRO308 PRO309 ARG310 HIS311 ILE312 PRO313 GLY314 VAL315 VAL316 GLU317 VAL318 THR319 LEU320 SER321 TYR322 LYS323 SER324 LYS325 GLN326 PHE327 CYS328 LYS329 GLY330 THR331 PRO332 GLY333 ARG334 PHE335 ILE336 TYR337 THR338 ALA339 LEU340 ASN341
Other macromolecules
Unit 3 DC1 DT2 DT3 DT4 DA5 DT6 DT7 DC8 DC9 DC10 DA11 DT12 DG13 DG14 DG15 DA16 DA17 DT18 DA19 DA20 DA21 DG22
Unit 4 DC1 DT2 DT3 DT4 DA5 DT6 DT7 DC8 DC9 DC10 DA11 DT12 DG13 DG14 DG15 DA16 DA17 DT18 DA19 DA20 DA21 DG22
Unit 7 DC1 DT2 DT3 DT4 DA5 DT6 DT7 DC8 DC9 DC10 DA11 DT12 DG13 DG14 DG15 DA16 DA17 DT18 DA19 DA20 DA21 DG22
Unit 8 DC1 DT2 DT3 DT4 DA5 DT6 DT7 DC8 DC9 DC10 DA11 DT12 DG13 DG14 DG15 DA16 DA17 DT18 DA19 DA20 DA21 DG22
Ligands
Unit 9 CIT1 CIT3 ZN501
Unit 10 CIT4 ZN501
Unit 11 CIT2 ZN501
Unit 12 CIT6 ZN501
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany