3E6Y - JenaLib

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Title :   STRUCTURE OF 14-3-3 IN COMPLEX WITH THE DIFFERENTIATION-INDUCING AGENT COTYLENIN A

Authors :   C. Ottmann, M. Weyand, A. Wittinghofer, C. Oecking

Date :   17 Aug 08 (Deposition) - 10 Mar 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: A,C  (1x)
Biol. Unit 3: B,D  (1x)

Keywords :   Adapter Protein, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Ottmann, M. Weyand, T. Sassa, T. Inoue, N. Kato, A. Wittinghofer, C. Oecking
A Structural Rationale For Selective Stabilization Of Anti-Tumor Interactions Of 14-3-3 Proteins By Cotylenin A
J. Mol. Biol. V. 386 913 2009
PubMed-ID: 19244612

Molecule 1 - 14-3-3-LIKE PROTEIN C
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Common	:	AMERICAN TOBACCO,TOBACCO
	Organism Scientific	:	NICOTIANA TABACUM
	Organism Taxid	:	4097
	Synonym	:	14-3-3-LIKE PROTEIN B

Molecule 2 - H+-ATPASE PHOSPHOPEPTIDE QSYPTV
	Chains	:	C, D
	Engineered	:	YES
	Other Details	:	THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. IT IS FOUND NATURALLY IN ARABIDOPSIS THALIANA
	Synthetic	:	YES

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:	A		C
Biological Unit 3 (1x)	:		B		D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 5)

No.	Name	Count	Type	Full Name
1	CL	1	Ligand/Ion	CHLORIDE ION
2	CW1	2	Ligand/Ion	COTYLENIN A
3	TPO	2	Mod. Amino Acid	PHOSPHOTHREONINE

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	CW1	2	Ligand/Ion	COTYLENIN A
3	TPO	2	Mod. Amino Acid	PHOSPHOTHREONINE

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	CW1	1	Ligand/Ion	COTYLENIN A
3	TPO	1	Mod. Amino Acid	PHOSPHOTHREONINE

Biological Unit 3 (2, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	CW1	1	Ligand/Ion	COTYLENIN A
3	TPO	1	Mod. Amino Acid	PHOSPHOTHREONINE

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:49 , VAL A:53 , PHE A:126 , LYS A:129 , PRO A:174 , ASP A:222 , HOH A:266 , HOH A:281 , HOH A:282 , HOH A:315 , VAL C:5	BINDING SITE FOR RESIDUE CW1 A 261
2	AC2	SOFTWARE	ARG A:63 , GLU A:140 , HOH A:270	BINDING SITE FOR RESIDUE CL A 262
3	AC3	SOFTWARE	ASN B:49 , PHE B:126 , LYS B:129 , ASP B:222 , HOH B:264 , HOH B:278 , HOH B:299 , VAL D:5	BINDING SITE FOR RESIDUE CW1 B 261

(no "SS Bond" information available for 3E6Y)

(no "Cis Peptide Bond" information available for 3E6Y)

(no "SAP(SNP)/Variant" information available for 3E6Y)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	1433_1	PS00796	14-3-3 proteins signature 1.	1433C_TOBAC	48-58	2	A:48-58 B:48-58
2	1433_2	PS00797	14-3-3 proteins signature 2.	1433C_TOBAC	220-239	2	A:220-238 B:220-239

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	1433_1	PS00796	14-3-3 proteins signature 1.	1433C_TOBAC	48-58	2	A:48-58 B:48-58
2	1433_2	PS00797	14-3-3 proteins signature 2.	1433C_TOBAC	220-239	2	A:220-238 B:220-239

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	1433_1	PS00796	14-3-3 proteins signature 1.	1433C_TOBAC	48-58	1	A:48-58 -
2	1433_2	PS00797	14-3-3 proteins signature 2.	1433C_TOBAC	220-239	1	A:220-238 -

Biological Unit 3 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	1433_1	PS00796	14-3-3 proteins signature 1.	1433C_TOBAC	48-58	1	- B:48-58
2	1433_2	PS00797	14-3-3 proteins signature 2.	1433C_TOBAC	220-239	1	- B:220-239

(no "Exon" information available for 3E6Y)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:234
 aligned with 1433C_TOBAC | P93343 from UniProtKB/Swiss-Prot  Length:260

    Alignment length:234
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234    
          1433C_TOBAC     5 PTAREENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEHVNSIREYRSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWT 238
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3e6yA00 A:5-238  [code=1.20.190.20, no name defined]                                                                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------1433_1     -----------------------------------------------------------------------------------------------------------------------------------------------------------------1433_2              PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3e6y A   5 PTAREENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEHVNSIREYRSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWT 238
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234

Chain B from PDB  Type:PROTEIN  Length:232
 aligned with 1433C_TOBAC | P93343 from UniProtKB/Swiss-Prot  Length:260

    Alignment length:237
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       
          1433C_TOBAC     4 APTAREENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEHVNSIREYRSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSD 240
               SCOP domains d3e6yb_ B: automated matches                                                                                                                                                                                                                  SCOP domains
               CATH domains 3e6yB00 B:4-240  [code=1.20.190.20, no name defined]                                                                                                                                                                                          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..-----..hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------1433_1     -----------------------------------------------------------------------------------------------------------------------------------------------------------------1433_2              - PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e6y B   4 APTAREENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEHVNSIREYRSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAE-----EESYKDSTLIMQLLRDNLTLWTSD 240
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       | -   |   223       233       
                                                                                                                                                                                                                                         211   217

Chain C from PDB  Type:PROTEIN  Length:5
 aligned with Q40409_NICPL | Q40409 from UniProtKB/TrEMBL  Length:440

    Alignment length:5
         Q40409_NICPL   436 QSYTV 440
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 3e6y C   1 QSYtV   5
                               | 
                               4-TPO

Chain D from PDB  Type:PROTEIN  Length:5
 aligned with Q40409_NICPL | Q40409 from UniProtKB/TrEMBL  Length:440

    Alignment length:5
         Q40409_NICPL   436 QSYTV 440
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 3e6y D   1 QSYtV   5
                               | 
                               | 
                               4-TPO

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: alpha-alpha superhelix (690)

Superfamily: 14-3-3 protein (60)

Family: 14-3-3 protein (60)

Protein domain: automated matches (43)

Tobacco (Nicotiana tabacum) [TaxId: 4097] (2)

d3e6yb_

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Up-down Bundle (3216)

Topology: Delta-Endotoxin; domain 1 (33)

Homologous Superfamily: [code=1.20.190.20, no name defined] (28)

American tobacco,tobacco (Nicotiana tabacum) (1)

1a	3e6yB00	B:4-240
1b	3e6yA00	A:5-238

(no "Pfam Domain" information available for 3E6Y)

Asymmetric Unit(hide GO term definitions)

Chain A,B (1433C_TOBAC | P93343)

molecular function
	GO:0019904		protein domain specific binding		Interacting selectively and non-covalently with a specific domain of a protein.

Chain C,D (Q40409_NICPL | Q40409)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Asymmetric Unit
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(no "Related Entries Specified in the PDB File" available for 3E6Y)

Description

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Chains, Units

Ligands, Modified Residues, Ions (3, 5)

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SS Bonds (0, 0)

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