3LU1 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE ANALYSIS OF WBGU: A UDP-GALNAC 4-EPIMERASE

Authors :   V. S. Bhatt, C. Y. Guo, G. Zhao, W. Yi, Z. J. Liu, P. G. Wang

Date :   16 Feb 10 (Deposition) - 21 Jul 10 (Release) - 12 Nov 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x),C (1x)
Biol. Unit 2: B,D  (1x)

Keywords :   Rossmann Fold, Epimerase, Lipopolysaccharide, Glycan, Nadh, Udp- Glcnac, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   V. S. Bhatt, C. Y. Guo, W. Guan, G. Zhao, W. Yi, Z. J. Liu, P. G. Wang
Altered Architecture Of Substrate Binding Region Defines Th Unique Specificity Of Udp-Galnac 4-Epimerases.
Protein Sci. V. 20 856 2011
PubMed-ID: 21384454 | Reference-DOI: 10.1002/PRO.611

Molecule 1 - WBGU
	Chains	:	A, B, C, D
	EC Number	:	5.1.3.7
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET15B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	WBGU
	Organism Scientific	:	PLESIOMONAS SHIGELLOIDES
	Organism Taxid	:	703
	Strain	:	O17

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A (1x)		C (1x)
Biological Unit 2 (1x)	:		B		D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 16)

No.	Name	Count	Type	Full Name
1	GLY	4	Mod. Amino Acid	GLYCINE
2	NA	1	Ligand/Ion	SODIUM ION
3	NAD	4	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
4	SO4	3	Ligand/Ion	SULFATE ION
5	UD2	4	Ligand/Ion	URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE

Biological Unit 1 (3, 3)

No.	Name	Count	Type	Full Name
1	GLY	1	Mod. Amino Acid	GLYCINE
2	NA	-1	Ligand/Ion	SODIUM ION
3	NAD	1	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
4	SO4	-1	Ligand/Ion	SULFATE ION
5	UD2	1	Ligand/Ion	URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE

Biological Unit 2 (4, 8)

No.	Name	Count	Type	Full Name
1	GLY	2	Mod. Amino Acid	GLYCINE
2	NA	-1	Ligand/Ion	SODIUM ION
3	NAD	2	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
4	SO4	2	Ligand/Ion	SULFATE ION
5	UD2	2	Ligand/Ion	URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:23 , ALA A:25 , GLY A:26 , PHE A:27 , ILE A:28 , ASP A:47 , ASN A:48 , SER A:50 , THR A:51 , GLY A:52 , GLY A:77 , ASP A:78 , ILE A:79 , GLN A:98 , ALA A:99 , ALA A:100 , THR A:117 , ALA A:140 , ALA A:141 , TYR A:166 , LYS A:170 , TYR A:193 , ASN A:195 , VAL A:196 , UD2 A:344 , HOH A:355 , HOH A:364 , HOH A:374 , HOH A:376 , HOH A:391	BINDING SITE FOR RESIDUE NAD A 343
02	AC2	SOFTWARE	SER A:103 , SER A:142 , SER A:143 , SER A:144 , TYR A:166 , TYR A:193 , ASN A:195 , VAL A:210 , LYS A:213 , TRP A:214 , TYR A:225 , ILE A:226 , ASN A:227 , ARG A:234 , LEU A:271 , ARG A:299 , ASP A:302 , VAL A:303 , NAD A:343 , HOH A:350 , HOH A:377	BINDING SITE FOR RESIDUE UD2 A 344
03	AC3	SOFTWARE	VAL A:134 , GLN A:135 , GLY A:185 , LYS A:187 , LYS A:257	BINDING SITE FOR RESIDUE GLY A 345
04	AC4	SOFTWARE	GLY B:23 , ALA B:25 , GLY B:26 , PHE B:27 , ILE B:28 , ASP B:47 , ASN B:48 , SER B:50 , THR B:51 , GLY B:52 , GLY B:77 , ASP B:78 , ILE B:79 , GLN B:98 , ALA B:99 , ALA B:100 , THR B:117 , ALA B:140 , ALA B:141 , TYR B:166 , LYS B:170 , TYR B:193 , ASN B:195 , VAL B:196 , UD2 B:344 , HOH B:354 , HOH B:362 , HOH B:367 , HOH B:378 , HOH B:383 , HOH B:399	BINDING SITE FOR RESIDUE NAD B 343
05	AC5	SOFTWARE	SER B:103 , SER B:142 , SER B:143 , SER B:144 , TYR B:166 , TYR B:193 , ASN B:195 , ALA B:209 , VAL B:210 , LYS B:213 , TYR B:225 , ILE B:226 , ASN B:227 , THR B:232 , ARG B:234 , LEU B:271 , ARG B:299 , ASP B:302 , VAL B:303 , NAD B:343 , HOH B:361 , HOH B:380 , HOH B:401 , HOH B:402	BINDING SITE FOR RESIDUE UD2 B 344
06	AC6	SOFTWARE	LYS B:253 , ASP B:254 , SER B:255	BINDING SITE FOR RESIDUE GLY B 345
07	AC7	SOFTWARE	GLY C:23 , ALA C:25 , GLY C:26 , PHE C:27 , ILE C:28 , ASP C:47 , ASN C:48 , SER C:50 , THR C:51 , GLY C:52 , GLY C:77 , ASP C:78 , ILE C:79 , GLN C:98 , ALA C:99 , ALA C:100 , THR C:117 , ALA C:140 , ALA C:141 , TYR C:166 , LYS C:170 , TYR C:193 , ASN C:195 , VAL C:196 , UD2 C:344 , HOH C:361 , HOH C:376 , HOH C:386	BINDING SITE FOR RESIDUE NAD C 343
08	AC8	SOFTWARE	SER C:103 , SER C:142 , SER C:143 , SER C:144 , TYR C:166 , TYR C:193 , ASN C:195 , ALA C:209 , VAL C:210 , LYS C:213 , TYR C:225 , ILE C:226 , ASN C:227 , THR C:232 , ARG C:234 , LEU C:271 , ARG C:299 , ASP C:302 , VAL C:303 , NAD C:343 , GLY C:346 , HOH C:358 , HOH C:360 , HOH C:379	BINDING SITE FOR RESIDUE UD2 C 344
09	AC9	SOFTWARE	ARG B:304 , HIS B:305 , ARG C:304 , HIS C:305	BINDING SITE FOR RESIDUE SO4 C 345
10	BC1	SOFTWARE	ASN C:227 , ARG C:296 , ARG C:299 , UD2 C:344	BINDING SITE FOR RESIDUE GLY C 346
11	BC2	SOFTWARE	GLY D:23 , ALA D:25 , GLY D:26 , PHE D:27 , ILE D:28 , ASP D:47 , ASN D:48 , SER D:50 , THR D:51 , GLY D:52 , GLY D:77 , ASP D:78 , ILE D:79 , GLN D:98 , ALA D:99 , ALA D:100 , ALA D:140 , ALA D:141 , TYR D:166 , LYS D:170 , TYR D:193 , ASN D:195 , VAL D:196 , UD2 D:343 , HOH D:349 , HOH D:379	BINDING SITE FOR RESIDUE NAD D 344
12	BC3	SOFTWARE	SER D:103 , SER D:142 , SER D:143 , SER D:144 , TYR D:166 , TYR D:193 , ASN D:195 , ALA D:209 , VAL D:210 , LYS D:213 , TRP D:214 , TYR D:225 , ILE D:226 , ASN D:227 , ARG D:234 , LEU D:271 , ARG D:299 , ASP D:302 , VAL D:303 , SER D:306 , NAD D:344	BINDING SITE FOR RESIDUE UD2 D 343
13	BC4	SOFTWARE	HOH D:380 , HOH D:381 , HOH D:382	BINDING SITE FOR RESIDUE NA D 345
14	BC5	SOFTWARE	HIS A:53 , GLN A:54 , TYR A:55 , ARG D:4 , LYS D:253 , LYS D:318	BINDING SITE FOR RESIDUE SO4 D 346
15	BC6	SOFTWARE	ARG A:4 , LYS A:253 , LYS A:318 , HIS D:53 , GLN D:54 , TYR D:55	BINDING SITE FOR RESIDUE SO4 D 347
16	BC7	SOFTWARE	ARG A:304 , HIS A:305 , ARG D:304 , HIS D:305	BINDING SITE FOR RESIDUE GLY D 348

(no "SS Bond" information available for 3LU1)

Asymmetric Unit

No.	Residues
1	Leu A:152	-	Pro A:153
2	Leu B:152	-	Pro B:153
3	Leu C:152	-	Pro C:153
4	Leu D:152	-	Pro D:153

(no "SAP(SNP)/Variant" information available for 3LU1)

(no "PROSITE Motif" information available for 3LU1)

(no "Exon" information available for 3LU1)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:336
 aligned with GNE_PLESH | Q7BJX9 from UniProtKB/Swiss-Prot  Length:345

    Alignment length:341
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343 
            GNE_PLESH     4 YMSRYEEITQQLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRFLK 344
               SCOP domains d3lu1a_ A: automated matches                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhh....eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee.hhhh................hhhhhhhhhhhhhhhhhhhhhh...eeeee..ee...........hhhhhhhhhhhhh...eee.....ee..eehhhhhhhhhhhhhhhhhhh.eeeee.....eehhhhhhhhhhhhhh...-----.eee.............hhhhhhhh......hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lu1 A   1 YMSRYEEITQQLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHH-----IKYREFRSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRFLK 341
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280      |  -  |    300       310       320       330       340 
                                                                                                                                                                                                                                                                                                                        287   293

Chain B from PDB  Type:PROTEIN  Length:334
 aligned with GNE_PLESH | Q7BJX9 from UniProtKB/Swiss-Prot  Length:345

    Alignment length:339
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335         
            GNE_PLESH     6 SRYEEITQQLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRFLK 344
               SCOP domains d3lu1b_ B: automated matches                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhh.hhhhhh.eeeee....hhhhhhhh.....eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhh................hhhhhhhhhhhhhhhhhhhhhh...eeeee..ee...........hhhhhhhhhhhhh...eee.....ee..eehhhhhhhhhhhhh.hhhhh.eeeee.....eehhhhhhhhhhhhhh...-----.eee.............hhhhhhhhh.....hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lu1 B   3 SRYEEITQQLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHH-----IKYREFRSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRFLK 341
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282    |    -|      302       312       322       332         
                                                                                                                                                                                                                                                                                                                      287   293

Chain C from PDB  Type:PROTEIN  Length:334
 aligned with GNE_PLESH | Q7BJX9 from UniProtKB/Swiss-Prot  Length:345

    Alignment length:339
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335         
            GNE_PLESH     6 SRYEEITQQLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRFLK 344
               SCOP domains d3lu1c_ C: automated matches                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhh.....eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee.hhhh................hhhhhhhhhhhhhhhhhhhhhh...eeeee..ee...........hhhhhhhhhhhhh...eee.....ee..eehhhhhhhhhhhhh.hhhhh.eeeee.....eehhhhhhhhhhhhhh...-----.eee.............hhhhhhhhh.....hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lu1 C   3 SRYEEITQQLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHH-----IKYREFRSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRFLK 341
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282    |    -|      302       312       322       332         
                                                                                                                                                                                                                                                                                                                      287   293

Chain D from PDB  Type:PROTEIN  Length:336
 aligned with GNE_PLESH | Q7BJX9 from UniProtKB/Swiss-Prot  Length:345

    Alignment length:341
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343 
            GNE_PLESH     4 YMSRYEEITQQLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRFLK 344
               SCOP domains d3lu1d_ D: automated matches                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhh..hhhhhh.eeeee....hhhhhhhhh....eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhh................hhhhhhhhhhhhhhhhhhhhhh...eeeee..ee...........hhhhhhhhhhhhh...eee.....ee..eehhhhhhhhhhhhhhhhhhh.eeeee.....eehhhhhhhhhhhhhh...-----.eee.............hhhhhhhh......hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lu1 D   1 YMSRYEEITQQLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHH-----IKYREFRSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRFLK 341
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280      |  -  |    300       310       320       330       340 
                                                                                                                                                                                                                                                                                                                        287   293

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: NAD(P)-binding Rossmann-fold domains (1604)

Superfamily: NAD(P)-binding Rossmann-fold domains (1604)

Family: Tyrosine-dependent oxidoreductases (503)

Protein domain: automated matches (114)

Plesiomonas shigelloides [TaxId: 703] (9)

1a	d3lu1a_	A:
1b	d3lu1b_	B:
1c	d3lu1c_	C:
1d	d3lu1d_	D:

(no "CATH Domain" information available for 3LU1)

(no "Pfam Domain" information available for 3LU1)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (GNE_PLESH | Q7BJX9)

molecular function
	GO:0003974	UDP-N-acetylglucosamine 4-epimerase activity	Catalysis of the reaction: UDP-N-acetyl-D-glucosamine = UDP-N-acetyl-D-galactosamine.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0050662	coenzyme binding	Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed.
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	Catalysis of a reaction that alters the configuration of one or more chiral centers in a carbohydrate molecule.
biological process
	GO:0009243	O antigen biosynthetic process	The chemical reactions and pathways resulting in the formation of the O side chain of a lipopolysaccharide, which determines the antigenic specificity of the organism. It is made up of about 50 repeating units of a branched tetrasaccharide.
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

Asymmetric Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
		GLY	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NAD	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		UD2	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]
		BC6	[ RasMol ]	+environment [ RasMol ]
		BC7	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Leu A:152 - Pro A:153	[ RasMol ]
		Leu B:152 - Pro B:153	[ RasMol ]
		Leu C:152 - Pro C:153	[ RasMol ]
		Leu D:152 - Pro D:153	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
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	3lu1
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
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	GNE_PLESH \| Q7BJX9
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		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

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	5.1.3.7
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

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		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
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	GNE_PLESH \| Q7BJX9
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	GNE_PLESH \| Q7BJX9	:	3ru7 3ru9 3rua 3ruc 3rud 3rue 3ruf 3ruh

(no "Related Entries Specified in the PDB File" available for 3LU1)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 16)

Sites (16, 16)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

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Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File