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(-) Description

Title :  CRYSTAL STRUCUTRE OF DTD FROM PLASMODIUM FALCIPARUM
 
Authors :  Y. Manickam, T. K. Bhatt, S. Khan, A. Sharma
Date :  01 Feb 10  (Deposition) - 02 Mar 10  (Release) - 05 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Dtd, Iodide, Deacylase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Yogavel, S. Khan, T. K. Bhatt, A. Sharma
Structure Of D-Tyrosyl-Trnatyr Deacylase Using Home-Source Cu Kalpha And Moderate-Quality Iodide-Sad Data: Structural Polymorphism And Hepes-Bound Enzyme States
Acta Crystallogr. , Sect. D V. 66 584 2010
PubMed-ID: 20445234  |  Reference-DOI: 10.1107/S0907444910006062

(-) Compounds

Molecule 1 - D-TYROSYL-TRNA(TYR) DEACYLASE
    Chains: A, B, C, D, E, F, G, H
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: B834(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: DTD, PF11_0095
    Organism Scientific: PLASMODIUM FALCIPARUM
    Organism Taxid: 36329
    Strain: 3D7

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 26)

Asymmetric Unit (1, 26)
No.NameCountTypeFull Name
1IOD26Ligand/IonIODIDE ION
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1IOD6Ligand/IonIODIDE ION
Biological Unit 2 (1, 10)
No.NameCountTypeFull Name
1IOD10Ligand/IonIODIDE ION
Biological Unit 3 (1, 5)
No.NameCountTypeFull Name
1IOD5Ligand/IonIODIDE ION
Biological Unit 4 (1, 5)
No.NameCountTypeFull Name
1IOD5Ligand/IonIODIDE ION

(-) Sites  (23, 23)

Asymmetric Unit (23, 23)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:87 , TYR A:116 , GLY A:135BINDING SITE FOR RESIDUE IOD A 165
02AC2SOFTWARESER E:87 , TYR E:116BINDING SITE FOR RESIDUE IOD E 165
03AC3SOFTWARESER C:87 , TYR C:116BINDING SITE FOR RESIDUE IOD C 165
04AC4SOFTWARESER B:87 , TYR B:116BINDING SITE FOR RESIDUE IOD B 165
05AC5SOFTWARESER D:87 , TYR D:116 , GLY D:135BINDING SITE FOR RESIDUE IOD D 165
06AC6SOFTWARESER G:87 , TYR G:116 , MET G:141BINDING SITE FOR RESIDUE IOD G 165
07AC7SOFTWARESER H:87 , TYR H:116BINDING SITE FOR RESIDUE IOD H 165
08AC8SOFTWAREGLN G:6BINDING SITE FOR RESIDUE IOD G 166
09AC9SOFTWARESER F:87 , TYR F:116BINDING SITE FOR RESIDUE IOD F 165
10BC1SOFTWAREASN B:147BINDING SITE FOR RESIDUE IOD B 166
11BC2SOFTWAREARG C:2 , PHE C:92BINDING SITE FOR RESIDUE IOD C 166
12BC3SOFTWAREARG A:57 , ASN B:99BINDING SITE FOR RESIDUE IOD B 167
13BC4SOFTWAREASN D:99BINDING SITE FOR RESIDUE IOD D 167
14BC5SOFTWAREPHE F:92BINDING SITE FOR RESIDUE IOD F 166
15BC6SOFTWAREASN C:99BINDING SITE FOR RESIDUE IOD C 167
16BC7SOFTWAREPHE E:137 , ASN H:69BINDING SITE FOR RESIDUE IOD H 166
17BC8SOFTWARESER D:87BINDING SITE FOR RESIDUE IOD D 168
18BC9SOFTWAREPHE D:137BINDING SITE FOR RESIDUE IOD D 169
19CC1SOFTWARESER B:87BINDING SITE FOR RESIDUE IOD B 168
20CC2SOFTWAREILE G:43 , SER G:87BINDING SITE FOR RESIDUE IOD G 167
21CC3SOFTWAREARG D:2 , LEU D:105BINDING SITE FOR RESIDUE IOD D 170
22CC4SOFTWAREILE F:43 , SER F:87BINDING SITE FOR RESIDUE IOD F 168
23CC5SOFTWARETRP C:49 , PHE C:115BINDING SITE FOR RESIDUE IOD C 168

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3LMU)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Gly A:149 -Pro A:150
2Gly B:149 -Pro B:150
3Gly C:149 -Pro C:150
4Gly D:149 -Pro D:150
5Gly E:149 -Pro E:150
6Gly F:149 -Pro F:150
7Gly G:149 -Pro G:150
8Gly H:149 -Pro H:150

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3LMU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3LMU)

(-) Exons   (0, 0)

(no "Exon" information available for 3LMU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:155
 aligned with Q8IIS0_PLAF7 | Q8IIS0 from UniProtKB/TrEMBL  Length:164

    Alignment length:159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         
         Q8IIS0_PLAF7     1 MRVVIQRVKGAILSVRKENIGENEKELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD 159
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeee......--..eeeeeee..eeeeeee.....hhhhhhhhhhhhhhh.....--............eeeeee.hhhhh..............hhhhhhhhhhhhhhhhhhhh....eee......eeeeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lmu A   1 MRVVIQRVKGAILSVRKENIGE--KELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNN--KTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD 159
                                    10        20 |  |   30        40        50        60      | 70        80        90       100       110       120       130       140       150         
                                                22 25                                        67 70                                                                                         


Chain B from PDB  Type:PROTEIN  Length:148
 aligned with Q8IIS0_PLAF7 | Q8IIS0 from UniProtKB/TrEMBL  Length:164

    Alignment length:159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         
         Q8IIS0_PLAF7     1 MRVVIQRVKGAILSVRKENIGENEKELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD 159
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeee.---------..eeeeee..eeeeeee.....hhhhhhhhhhhhhhh..eee..eeeee.hhhhh.eeeeee.hhhhh...--.........hhhhhhhhhhhhhhhhhhhh....eee......eeeeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lmu B   1 MRVVIQRVKGAILSVR---------ELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTK--NKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD 159
                                    10     |   -     |  30        40        50        60        70        80        90     | 100       110       120       130       140       150         
                                          16        26                                                                    96 99                                                            


Chain C from PDB  Type:PROTEIN  Length:148
 aligned with Q8IIS0_PLAF7 | Q8IIS0 from UniProtKB/TrEMBL  Length:164

    Alignment length:159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         
         Q8IIS0_PLAF7     1 MRVVIQRVKGAILSVRKENIGENEKELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD 159
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeee.-----------....eee..eeeeeee.....hhhhhhhhhhhhhhh..eee..eeeee.......eeeeee.hhhhh..............hhhhhhhhhhhhhhhhhhhh....eee......eeeeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lmu C   1 MRVVIQRVKGAILSV-----------LEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD 159
                                    10    |    -      | 30        40        50        60        70        80        90       100       110       120       130       140       150         
                                         15          27                                                                                                                                    


Chain D from PDB  Type:PROTEIN  Length:148
 aligned with Q8IIS0_PLAF7 | Q8IIS0 from UniProtKB/TrEMBL  Length:164

    Alignment length:159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         
         Q8IIS0_PLAF7     1 MRVVIQRVKGAILSVRKENIGENEKELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD 159
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeee.-----------..eeeee..eeeeeee.....hhhhhhhhhhhhh.....................eeeeee.hhhhh..............hhhhhhhhhhhhhhhhhhhh....eee......eeeeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lmu D   1 MRVVIQRVKGAILSV-----------LEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD 159
                                    10    |    -      | 30        40        50        60        70        80        90       100       110       120       130       140       150         
                                         15          27                                                                                                                                    


Chain E from PDB  Type:PROTEIN  Length:145
 aligned with Q8IIS0_PLAF7 | Q8IIS0 from UniProtKB/TrEMBL  Length:164

    Alignment length:159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         
         Q8IIS0_PLAF7     1 MRVVIQRVKGAILSVRKENIGENEKELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD 159
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeee.-----------..eeeee..eeeeeee.....hhhhhhhhhhhhhhheee..--....ee......eeeeee.hhhhh...-..........hhhhhhhhhhhhhhhhhhhh....eee......eeeeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lmu E   1 MRVVIQRVKGAILSV-----------LEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNN--KTWDKNVKDLNYELLIVSQFTLFGNTK-GNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD 159
                                    10    |    -      | 30        40        50        60      | 70        80        90     | 100       110       120       130       140       150         
                                         15          27                                      67 70                        96 |                                                             
                                                                                                                            98                                                             


Chain F from PDB  Type:PROTEIN  Length:144
 aligned with Q8IIS0_PLAF7 | Q8IIS0 from UniProtKB/TrEMBL  Length:164

    Alignment length:159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         
         Q8IIS0_PLAF7     1 MRVVIQRVKGAILSVRKENIGENEKELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD 159
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeee.------------...eee..eeeeeee.....hhhhhhhhhhhhhhh....---............eeeeee.hhhhh..............hhhhhhhhhhhhhhhhhhhh....eee......eeeeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lmu F   1 MRVVIQRVKGAILSV------------EIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWN---KTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD 159
                                    10    |    -       |30        40        50        60     |  70        80        90       100       110       120       130       140       150         
                                         15           28                                    66  70                                                                                         


Chain G from PDB  Type:PROTEIN  Length:148
 aligned with Q8IIS0_PLAF7 | Q8IIS0 from UniProtKB/TrEMBL  Length:164

    Alignment length:159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         
         Q8IIS0_PLAF7     1 MRVVIQRVKGAILSVRKENIGENEKELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD 159
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeee.-----------....eee..eeeeeee.....hhhhhhhhhhhhhhh..eee..eeeee.hhhhh.eeeeee.hhhhh..............hhhhhhhhhhhhhhhhhhhhhhh.eee......eeeeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lmu G   1 MRVVIQRVKGAILSV-----------LEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD 159
                                    10    |    -      | 30        40        50        60        70        80        90       100       110       120       130       140       150         
                                         15          27                                                                                                                                    


Chain H from PDB  Type:PROTEIN  Length:148
 aligned with Q8IIS0_PLAF7 | Q8IIS0 from UniProtKB/TrEMBL  Length:164

    Alignment length:159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         
         Q8IIS0_PLAF7     1 MRVVIQRVKGAILSVRKENIGENEKELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD 159
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -Tyr_Deacylase-           3lmuH01 H:2-157                                                                                                                    -- Pfam domains (1)
           Pfam domains (2) -Tyr_Deacylase-           3lmuH02 H:2-157                                                                                                                    -- Pfam domains (2)
           Pfam domains (3) -Tyr_Deacylase-           3lmuH03 H:2-157                                                                                                                    -- Pfam domains (3)
           Pfam domains (4) -Tyr_Deacylase-           3lmuH04 H:2-157                                                                                                                    -- Pfam domains (4)
           Pfam domains (5) -Tyr_Deacylase-           3lmuH05 H:2-157                                                                                                                    -- Pfam domains (5)
           Pfam domains (6) -Tyr_Deacylase-           3lmuH06 H:2-157                                                                                                                    -- Pfam domains (6)
           Pfam domains (7) -Tyr_Deacylase-           3lmuH07 H:2-157                                                                                                                    -- Pfam domains (7)
           Pfam domains (8) -Tyr_Deacylase-           3lmuH08 H:2-157                                                                                                                    -- Pfam domains (8)
         Sec.struct. author .eeeeeeeeeeeee.-----------..eeeee..eeeeeee.....hhhhhhhhhhhhhhheeeee..eeeeee......eeeeee.hhhhh..............hhhhhhhhhhhhhhhhhhhh....eee......eeeeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lmu H   1 MRVVIQRVKGAILSV-----------LEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD 159
                                    10    |    -      | 30        40        50        60        70        80        90       100       110       120       130       140       150         
                                         15          27
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3LMU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3LMU)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Clan: no clan defined [family: Tyr_Deacylase] (12)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (Q8IIS0_PLAF7 | Q8IIS0)
molecular function
    GO:0051500    D-tyrosyl-tRNA(Tyr) deacylase activity    Catalysis of the reaction: D-tyrosyl-tRNA(Tyr) = D-tyrosine + tRNA(Tyr). Hydrolysis of the removal of D-tyrosine from tyrosine residues in charged tRNA.
    GO:0002161    aminoacyl-tRNA editing activity    The hydrolysis of an incorrectly aminoacylated tRNA.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016788    hydrolase activity, acting on ester bonds    Catalysis of the hydrolysis of any ester bond.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0019478    D-amino acid catabolic process    The chemical reactions and pathways resulting in the breakdown of D-amino acids, the D-enantiomers of amino acids.
    GO:0006450    regulation of translational fidelity    Any process that modulates the ability of the translational apparatus to interpret the genetic code.
    GO:0006399    tRNA metabolic process    The chemical reactions and pathways involving tRNA, transfer RNA, a class of relatively small RNA molecules responsible for mediating the insertion of amino acids into the sequence of nascent polypeptide chains during protein synthesis. Transfer RNA is characterized by the presence of many unusual minor bases, the function of which has not been completely established.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  Cis Peptide Bonds
    Gly A:149 - Pro A:150   [ RasMol ]  
    Gly B:149 - Pro B:150   [ RasMol ]  
    Gly C:149 - Pro C:150   [ RasMol ]  
    Gly D:149 - Pro D:150   [ RasMol ]  
    Gly E:149 - Pro E:150   [ RasMol ]  
    Gly F:149 - Pro F:150   [ RasMol ]  
    Gly G:149 - Pro G:150   [ RasMol ]  
    Gly H:149 - Pro H:150   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        Q8IIS0_PLAF7 | Q8IIS0: 3knf 3knp 3ko3 3ko4 3ko5 3ko7 3ko9 3kob 3koc 3kod 3lmt 3lmv 4nbi 4nbj 5j61

(-) Related Entries Specified in the PDB File

3knf 3knp 3ko3 3ko4 3ko5 3ko7 3ko9 3kob 3koc 3kod 3lmt 3lmv