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3LMU
Asym. Unit
Info
Asym.Unit (195 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (51 KB)
Biol.Unit 3 (49 KB)
Biol.Unit 4 (49 KB)
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(1)
Title
:
CRYSTAL STRUCUTRE OF DTD FROM PLASMODIUM FALCIPARUM
Authors
:
Y. Manickam, T. K. Bhatt, S. Khan, A. Sharma
Date
:
01 Feb 10 (Deposition) - 02 Mar 10 (Release) - 05 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Dtd, Iodide, Deacylase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Yogavel, S. Khan, T. K. Bhatt, A. Sharma
Structure Of D-Tyrosyl-Trnatyr Deacylase Using Home-Source Cu Kalpha And Moderate-Quality Iodide-Sad Data: Structural Polymorphism And Hepes-Bound Enzyme States
Acta Crystallogr. , Sect. D V. 66 584 2010
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Hetero Components
(1, 26)
Info
All Hetero Components
1a: IODIDE ION (IODa)
1b: IODIDE ION (IODb)
1c: IODIDE ION (IODc)
1d: IODIDE ION (IODd)
1e: IODIDE ION (IODe)
1f: IODIDE ION (IODf)
1g: IODIDE ION (IODg)
1h: IODIDE ION (IODh)
1i: IODIDE ION (IODi)
1j: IODIDE ION (IODj)
1k: IODIDE ION (IODk)
1l: IODIDE ION (IODl)
1m: IODIDE ION (IODm)
1n: IODIDE ION (IODn)
1o: IODIDE ION (IODo)
1p: IODIDE ION (IODp)
1q: IODIDE ION (IODq)
1r: IODIDE ION (IODr)
1s: IODIDE ION (IODs)
1t: IODIDE ION (IODt)
1u: IODIDE ION (IODu)
1v: IODIDE ION (IODv)
1w: IODIDE ION (IODw)
1x: IODIDE ION (IODx)
1y: IODIDE ION (IODy)
1z: IODIDE ION (IODz)
View:
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No.
Name
Count
Type
Full Name
1
IOD
26
Ligand/Ion
IODIDE ION
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Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:87 , TYR A:116 , GLY A:135
BINDING SITE FOR RESIDUE IOD A 165
02
AC2
SOFTWARE
SER E:87 , TYR E:116
BINDING SITE FOR RESIDUE IOD E 165
03
AC3
SOFTWARE
SER C:87 , TYR C:116
BINDING SITE FOR RESIDUE IOD C 165
04
AC4
SOFTWARE
SER B:87 , TYR B:116
BINDING SITE FOR RESIDUE IOD B 165
05
AC5
SOFTWARE
SER D:87 , TYR D:116 , GLY D:135
BINDING SITE FOR RESIDUE IOD D 165
06
AC6
SOFTWARE
SER G:87 , TYR G:116 , MET G:141
BINDING SITE FOR RESIDUE IOD G 165
07
AC7
SOFTWARE
SER H:87 , TYR H:116
BINDING SITE FOR RESIDUE IOD H 165
08
AC8
SOFTWARE
GLN G:6
BINDING SITE FOR RESIDUE IOD G 166
09
AC9
SOFTWARE
SER F:87 , TYR F:116
BINDING SITE FOR RESIDUE IOD F 165
10
BC1
SOFTWARE
ASN B:147
BINDING SITE FOR RESIDUE IOD B 166
11
BC2
SOFTWARE
ARG C:2 , PHE C:92
BINDING SITE FOR RESIDUE IOD C 166
12
BC3
SOFTWARE
ARG A:57 , ASN B:99
BINDING SITE FOR RESIDUE IOD B 167
13
BC4
SOFTWARE
ASN D:99
BINDING SITE FOR RESIDUE IOD D 167
14
BC5
SOFTWARE
PHE F:92
BINDING SITE FOR RESIDUE IOD F 166
15
BC6
SOFTWARE
ASN C:99
BINDING SITE FOR RESIDUE IOD C 167
16
BC7
SOFTWARE
PHE E:137 , ASN H:69
BINDING SITE FOR RESIDUE IOD H 166
17
BC8
SOFTWARE
SER D:87
BINDING SITE FOR RESIDUE IOD D 168
18
BC9
SOFTWARE
PHE D:137
BINDING SITE FOR RESIDUE IOD D 169
19
CC1
SOFTWARE
SER B:87
BINDING SITE FOR RESIDUE IOD B 168
20
CC2
SOFTWARE
ILE G:43 , SER G:87
BINDING SITE FOR RESIDUE IOD G 167
21
CC3
SOFTWARE
ARG D:2 , LEU D:105
BINDING SITE FOR RESIDUE IOD D 170
22
CC4
SOFTWARE
ILE F:43 , SER F:87
BINDING SITE FOR RESIDUE IOD F 168
23
CC5
SOFTWARE
TRP C:49 , PHE C:115
BINDING SITE FOR RESIDUE IOD C 168
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Tyr_Deacylase_3lmuH01 (H:2-157)
1b: PFAM_Tyr_Deacylase_3lmuH02 (H:2-157)
1c: PFAM_Tyr_Deacylase_3lmuH03 (H:2-157)
1d: PFAM_Tyr_Deacylase_3lmuH04 (H:2-157)
1e: PFAM_Tyr_Deacylase_3lmuH05 (H:2-157)
1f: PFAM_Tyr_Deacylase_3lmuH06 (H:2-157)
1g: PFAM_Tyr_Deacylase_3lmuH07 (H:2-157)
1h: PFAM_Tyr_Deacylase_3lmuH08 (H:2-157)
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Clans
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Organisms
(
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(
)
Clan
:
no clan defined [family: Tyr_Deacylase]
(12)
Family
:
Tyr_Deacylase
(12)
Plasmodium falciparum (isolate 3D7)
(9)
1a
Tyr_Deacylase-3lmuH01
H:2-157
1b
Tyr_Deacylase-3lmuH02
H:2-157
1c
Tyr_Deacylase-3lmuH03
H:2-157
1d
Tyr_Deacylase-3lmuH04
H:2-157
1e
Tyr_Deacylase-3lmuH05
H:2-157
1f
Tyr_Deacylase-3lmuH06
H:2-157
1g
Tyr_Deacylase-3lmuH07
H:2-157
1h
Tyr_Deacylase-3lmuH08
H:2-157
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (195 KB)
Header - Asym.Unit
Biol.Unit 1 (52 KB)
Header - Biol.Unit 1
Biol.Unit 2 (51 KB)
Header - Biol.Unit 2
Biol.Unit 3 (49 KB)
Header - Biol.Unit 3
Biol.Unit 4 (49 KB)
Header - Biol.Unit 4
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