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(-) Description

Title :  STRUCTURE OF PROBABLE TRANSLATION INITIATION INHIBITOR FROM (RPA2473) FROM RHODOPSEUDOMONAS PALUSTRIS
 
Authors :  U. A. Ramagopal, R. Toro, S. K. Burley, S. C. Almo, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  29 Jan 10  (Deposition) - 02 Mar 10  (Release) - 02 Mar 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.74
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Biol. Unit 3:  G,H,I  (1x)
Biol. Unit 4:  J,K,L  (1x)
Keywords :  Structural Genomics, Translation Initiation Inhibitor, Rpa2473, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Translation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. A. Ramagopal, R. Toro, S. K. Burley, S. C. Almo
Structure Of Probable Translation Initiation Inhibitor From (Rpa2473) From Rhodopseudomonas Palustris
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - POSSIBLE TRANSLATION INITIATION INHIBITOR
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BC-PSGX4(BC)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: SEQUENCE DATABASE RESIDUES 30-157
    Gene: RPA2473
    Organism Scientific: RHODOPSEUDOMONAS PALUSTRIS
    Organism Taxid: 1076

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABC         
Biological Unit 2 (1x):    DEF      
Biological Unit 3 (1x):       GHI   
Biological Unit 4 (1x):          JKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 14)

Asymmetric Unit (1, 14)
No.NameCountTypeFull Name
1SO414Ligand/IonSULFATE ION
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 4 (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:113 , ASN A:117 , ARG A:132 , GLY B:43 , TRP B:45BINDING SITE FOR RESIDUE SO4 A 1
02AC2SOFTWARETHR A:133 , VAL A:134 , HIS B:61 , GLU B:147BINDING SITE FOR RESIDUE SO4 A 15
03AC3SOFTWARETRP A:45 , ARG C:113 , ASN C:117 , ARG C:132BINDING SITE FOR RESIDUE SO4 C 3
04AC4SOFTWAREARG D:113 , THR D:133 , VAL D:134 , HIS E:61 , ASP E:141 , GLU E:147BINDING SITE FOR RESIDUE SO4 D 5
05AC5SOFTWAREARG D:113 , ASN D:117 , SER E:42 , GLY E:43 , TRP E:45 , ARG G:65BINDING SITE FOR RESIDUE SO4 E 4
06AC6SOFTWAREARG E:113 , ASN E:117 , ARG E:132 , SER F:42 , TRP F:45BINDING SITE FOR RESIDUE SO4 E 6
07AC7SOFTWARESER D:42 , TRP D:45 , ARG F:113 , ASN F:117 , ARG F:132BINDING SITE FOR RESIDUE SO4 F 7
08AC8SOFTWAREARG D:65 , ARG G:113 , ASN G:117 , ARG G:132 , SER H:42 , TRP H:45BINDING SITE FOR RESIDUE SO4 G 8
09AC9SOFTWAREARG H:113 , ASN H:117 , ARG H:132 , TRP I:45 , ASP I:141BINDING SITE FOR RESIDUE SO4 H 9
10BC1SOFTWARETRP G:45 , ARG I:113 , ASN I:117 , ARG I:132BINDING SITE FOR RESIDUE SO4 I 10
11BC2SOFTWAREARG J:113 , ASN J:117 , ARG J:132 , SER K:42 , GLY K:43 , TRP K:45 , ASP K:141BINDING SITE FOR RESIDUE SO4 J 11
12BC3SOFTWAREARG A:65 , ARG K:113 , ASN K:117 , SER L:42 , GLY L:43 , TRP L:45BINDING SITE FOR RESIDUE SO4 K 12
13BC4SOFTWAREARG K:113 , ARG K:132 , THR K:133 , VAL K:134 , HIS L:61 , ASP L:141 , GLU L:147BINDING SITE FOR RESIDUE SO4 K 14
14BC5SOFTWARETRP J:45 , ASP J:141 , ARG L:113 , ASN L:117 , ARG L:132BINDING SITE FOR RESIDUE SO4 L 13

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3LME)

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Gly A:127 -Pro A:128
2Gly B:127 -Pro B:128
3Gly C:127 -Pro C:128
4Gly D:127 -Pro D:128
5Gly E:127 -Pro E:128
6Asp F:72 -Gly F:73
7Gly F:127 -Pro F:128
8Gly G:127 -Pro G:128
9Asp H:72 -Gly H:73
10Gly H:127 -Pro H:128
11Gly I:127 -Pro I:128
12Gly J:127 -Pro J:128
13Asp K:72 -Gly K:73
14Gly K:127 -Pro K:128
15Asp L:72 -Gly L:73
16Gly L:127 -Pro L:128

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3LME)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3LME)

(-) Exons   (0, 0)

(no "Exon" information available for 3LME)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:129
 aligned with Q6N6Z0_RHOPA | Q6N6Z0 from UniProtKB/TrEMBL  Length:157

    Alignment length:129
                                    37        47        57        67        77        87        97       107       117       127       137       147         
         Q6N6Z0_RHOPA    28 AVKIIAPTDKTITPSGTWSIGARAGDFVFIGGMRGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYAPA 156
               SCOP domains d3lmea_ A: automated matches                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee................eeee..eeeeeeee...........hhhhhhhhhhhhhhhhhhh...hhh.eeeeeeee.hhhhhhhhhhhhhhhhhh......eeeee...hhhhh.eeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lme A  28 SLKIIAPTDKTITPSGTWSIGARAGDFVFIGGMHGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYAPA 156
                                    37        47        57        67        77        87        97       107       117       127       137       147         


Chain B from PDB  Type:PROTEIN  Length:129
 aligned with Q6N6Z0_RHOPA | Q6N6Z0 from UniProtKB/TrEMBL  Length:157

    Alignment length:129
                                    37        47        57        67        77        87        97       107       117       127       137       147         
         Q6N6Z0_RHOPA    28 AVKIIAPTDKTITPSGTWSIGARAGDFVFIGGMRGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYAPA 156
               SCOP domains d3lmeb_ B: automated matches                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee................eeee..eeee...............hhhhhhhhhhhhhhhhhhh...hhh.eeeeeeee.hhhhhhhhhhhhhhhhhh......eeeee...hhhhh.eeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lme B  28 SLKIIAPTDKTITPSGTWSIGARAGDFVFIGGMHGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYAPA 156
                                    37        47        57        67        77        87        97       107       117       127       137       147         


Chain C from PDB  Type:PROTEIN  Length:127
 aligned with Q6N6Z0_RHOPA | Q6N6Z0 from UniProtKB/TrEMBL  Length:157

    Alignment length:127
                                    37        47        57        67        77        87        97       107       117       127       137       147       
         Q6N6Z0_RHOPA    28 AVKIIAPTDKTITPSGTWSIGARAGDFVFIGGMRGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYA 154
               SCOP domains d3lmec_ C: automated matches                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee................eeee..eeeeeee............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhhhhhhh......eeeee...hhhhh.eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lme C  28 SLKIIAPTDKTITPSGTWSIGARAGDFVFIGGMHGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYA 154
                                    37        47        57        67        77        87        97       107       117       127       137       147       


Chain D from PDB  Type:PROTEIN  Length:129
 aligned with Q6N6Z0_RHOPA | Q6N6Z0 from UniProtKB/TrEMBL  Length:157

    Alignment length:129
                                    37        47        57        67        77        87        97       107       117       127       137       147         
         Q6N6Z0_RHOPA    28 AVKIIAPTDKTITPSGTWSIGARAGDFVFIGGMRGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYAPA 156
               SCOP domains d3lmed_ D: automated matches                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee................eeee..eeeeeee............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhhhhhhh......eeeee...hhhhh.eeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lme D  28 SLKIIAPTDKTITPSGTWSIGARAGDFVFIGGMHGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYAPA 156
                                    37        47        57        67        77        87        97       107       117       127       137       147         


Chain E from PDB  Type:PROTEIN  Length:129
 aligned with Q6N6Z0_RHOPA | Q6N6Z0 from UniProtKB/TrEMBL  Length:157

    Alignment length:129
                                    37        47        57        67        77        87        97       107       117       127       137       147         
         Q6N6Z0_RHOPA    28 AVKIIAPTDKTITPSGTWSIGARAGDFVFIGGMRGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYAPA 156
               SCOP domains d3lmee_ E: automated matches                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee................eeee..eeeeeee............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhhhhhhh......eeeee...hhhhh.eeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lme E  28 SLKIIAPTDKTITPSGTWSIGARAGDFVFIGGMHGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYAPA 156
                                    37        47        57        67        77        87        97       107       117       127       137       147         


Chain F from PDB  Type:PROTEIN  Length:127
 aligned with Q6N6Z0_RHOPA | Q6N6Z0 from UniProtKB/TrEMBL  Length:157

    Alignment length:127
                                    37        47        57        67        77        87        97       107       117       127       137       147       
         Q6N6Z0_RHOPA    28 AVKIIAPTDKTITPSGTWSIGARAGDFVFIGGMRGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYA 154
               SCOP domains d3lmef_ F: automated matches                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee................eeee..eeeeeeee...........hhhhhhhhhhhhhhhhhhh...hhh.eeeeeeee.hhhhhhhhhhhhhhhhhh......eeeee...hhhhh.eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lme F  28 SLKIIAPTDKTITPSGTWSIGARAGDFVFIGGMHGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYA 154
                                    37        47        57        67        77        87        97       107       117       127       137       147       


Chain G from PDB  Type:PROTEIN  Length:129
 aligned with Q6N6Z0_RHOPA | Q6N6Z0 from UniProtKB/TrEMBL  Length:157

    Alignment length:129
                                    37        47        57        67        77        87        97       107       117       127       137       147         
         Q6N6Z0_RHOPA    28 AVKIIAPTDKTITPSGTWSIGARAGDFVFIGGMRGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYAPA 156
               SCOP domains d3lmeg_ G: automated matches                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee................eeee..eeeeeee............hhhhhhhhhhhhhhhhhhh...hhh.eeeeeeee.hhhhhhhhhhhhhhhhhh......eeeee...hhhhh.eeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lme G  28 SLKIIAPTDKTITPSGTWSIGARAGDFVFIGGMHGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYAPA 156
                                    37        47        57        67        77        87        97       107       117       127       137       147         


Chain H from PDB  Type:PROTEIN  Length:129
 aligned with Q6N6Z0_RHOPA | Q6N6Z0 from UniProtKB/TrEMBL  Length:157

    Alignment length:129
                                    37        47        57        67        77        87        97       107       117       127       137       147         
         Q6N6Z0_RHOPA    28 AVKIIAPTDKTITPSGTWSIGARAGDFVFIGGMRGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYAPA 156
               SCOP domains d3lmeh_ H: automated matches                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee................eeee..eeeeeee............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhhhhhhh......eeeee...hhhhh.eeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lme H  28 SLKIIAPTDKTITPSGTWSIGARAGDFVFIGGMHGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYAPA 156
                                    37        47        57        67        77        87        97       107       117       127       137       147         


Chain I from PDB  Type:PROTEIN  Length:128
 aligned with Q6N6Z0_RHOPA | Q6N6Z0 from UniProtKB/TrEMBL  Length:157

    Alignment length:128
                                    37        47        57        67        77        87        97       107       117       127       137       147        
         Q6N6Z0_RHOPA    28 AVKIIAPTDKTITPSGTWSIGARAGDFVFIGGMRGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYAP 155
               SCOP domains d3lmei_ I: automated matches                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee................eeee..eeeeeee............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhhhhhhh......eeeee...hhhhh.eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lme I  28 SLKIIAPTDKTITPSGTWSIGARAGDFVFIGGMHGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYAP 155
                                    37        47        57        67        77        87        97       107       117       127       137       147        


Chain J from PDB  Type:PROTEIN  Length:129
 aligned with Q6N6Z0_RHOPA | Q6N6Z0 from UniProtKB/TrEMBL  Length:157

    Alignment length:129
                                    37        47        57        67        77        87        97       107       117       127       137       147         
         Q6N6Z0_RHOPA    28 AVKIIAPTDKTITPSGTWSIGARAGDFVFIGGMRGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYAPA 156
               SCOP domains d3lmej_ J: automated matches                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee................eeee..eeee...............hhhhhhhhhhhhhhhhhhh...hhh.eeeeeeee.hhhhhhhhhhhhhhhhhh......eeeee...hhhhh.eeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lme J  28 SLKIIAPTDKTITPSGTWSIGARAGDFVFIGGMHGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYAPA 156
                                    37        47        57        67        77        87        97       107       117       127       137       147         


Chain K from PDB  Type:PROTEIN  Length:129
 aligned with Q6N6Z0_RHOPA | Q6N6Z0 from UniProtKB/TrEMBL  Length:157

    Alignment length:129
                                    37        47        57        67        77        87        97       107       117       127       137       147         
         Q6N6Z0_RHOPA    28 AVKIIAPTDKTITPSGTWSIGARAGDFVFIGGMRGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYAPA 156
               SCOP domains d3lmek_ K: automated matches                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee................eeee..eeeeeee............hhhhhhhhhhhhhhhhhhh...hhh.eeeeeeee.hhhhhhhhhhhhhhhhhh......eeeee...hhhhh.eeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lme K  28 SLKIIAPTDKTITPSGTWSIGARAGDFVFIGGMHGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYAPA 156
                                    37        47        57        67        77        87        97       107       117       127       137       147         


Chain L from PDB  Type:PROTEIN  Length:128
 aligned with Q6N6Z0_RHOPA | Q6N6Z0 from UniProtKB/TrEMBL  Length:157

    Alignment length:128
                                    37        47        57        67        77        87        97       107       117       127       137       147        
         Q6N6Z0_RHOPA    28 AVKIIAPTDKTITPSGTWSIGARAGDFVFIGGMRGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYAP 155
               SCOP domains d3lmel_ L: automated matches                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------Ribonuc_L-PSP-3lmeL01 L:35-154                                                                                          - Pfam domains (1)
           Pfam domains (2) -------Ribonuc_L-PSP-3lmeL02 L:35-154                                                                                          - Pfam domains (2)
           Pfam domains (3) -------Ribonuc_L-PSP-3lmeL03 L:35-154                                                                                          - Pfam domains (3)
           Pfam domains (4) -------Ribonuc_L-PSP-3lmeL04 L:35-154                                                                                          - Pfam domains (4)
           Pfam domains (5) -------Ribonuc_L-PSP-3lmeL05 L:35-154                                                                                          - Pfam domains (5)
           Pfam domains (6) -------Ribonuc_L-PSP-3lmeL06 L:35-154                                                                                          - Pfam domains (6)
           Pfam domains (7) -------Ribonuc_L-PSP-3lmeL07 L:35-154                                                                                          - Pfam domains (7)
           Pfam domains (8) -------Ribonuc_L-PSP-3lmeL08 L:35-154                                                                                          - Pfam domains (8)
           Pfam domains (9) -------Ribonuc_L-PSP-3lmeL09 L:35-154                                                                                          - Pfam domains (9)
          Pfam domains (10) -------Ribonuc_L-PSP-3lmeL10 L:35-154                                                                                          - Pfam domains (10)
          Pfam domains (11) -------Ribonuc_L-PSP-3lmeL11 L:35-154                                                                                          - Pfam domains (11)
          Pfam domains (12) -------Ribonuc_L-PSP-3lmeL12 L:35-154                                                                                          - Pfam domains (12)
         Sec.struct. author ..ee................eeee..eeeeeee............hhhhhhhhhhhhhhhhhhh...hhh.eeeeeeee.hhhhhhhhhhhhhhhhhh......eeeee...hhhhh.eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lme L  28 SLKIIAPTDKTITPSGTWSIGARAGDFVFIGGMHGTDRVTGKMVDGDEARIRRMFDNMLAAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIAEIDGTFYAP 155
                                    37        47        57        67        77        87        97       107       117       127       137       147
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3LME)

(-) Pfam Domains  (1, 12)

Asymmetric Unit
(-)
Clan: no clan defined [family: Ribonuc_L-PSP] (16)

(-) Gene Ontology  (0, 0)

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