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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF PROBABLE TRANSLATION INITIATION INHIBITOR FROM FROM RHODOPSEUDOMONAS PALUSTRIS
Keywords STRUCTURAL GENOMICS, TRANSLATION INITIATION INHIBITOR, RPA24 2, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENT STRUCTURAL GENOMICS, NYSGXRC, TRANSLATION
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3LME     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   POSSIBLE TRANSLATION INITIATION INHIBITOR  A 129 970 0
2  Protein   POSSIBLE TRANSLATION INITIATION INHIBITOR  B 129 970 0
3  Protein   POSSIBLE TRANSLATION INITIATION INHIBITOR  C 127 958 0
4  Protein   POSSIBLE TRANSLATION INITIATION INHIBITOR  D 129 970 0
5  Protein   POSSIBLE TRANSLATION INITIATION INHIBITOR  E 129 970 0
6  Protein   POSSIBLE TRANSLATION INITIATION INHIBITOR  F 127 958 0
7  Protein   POSSIBLE TRANSLATION INITIATION INHIBITOR  G 129 970 0
8  Protein   POSSIBLE TRANSLATION INITIATION INHIBITOR  H 129 970 0
9  Protein   POSSIBLE TRANSLATION INITIATION INHIBITOR  I 128 965 0
10  Protein   POSSIBLE TRANSLATION INITIATION INHIBITOR  J 129 970 0
11  Protein   POSSIBLE TRANSLATION INITIATION INHIBITOR  K 129 970 0
12  Protein   POSSIBLE TRANSLATION INITIATION INHIBITOR  L 128 965 0
13  Ligand   POSSIBLE TRANSLATION INITIATION INHIBITOR  A 2 0 10
14  Ligand   POSSIBLE TRANSLATION INITIATION INHIBITOR  C 1 0 5
15  Ligand   POSSIBLE TRANSLATION INITIATION INHIBITOR  D 1 0 5
16  Ligand   POSSIBLE TRANSLATION INITIATION INHIBITOR  E 2 0 10
17  Ligand   POSSIBLE TRANSLATION INITIATION INHIBITOR  F 1 0 5
18  Ligand   POSSIBLE TRANSLATION INITIATION INHIBITOR  G 1 0 5
19  Ligand   POSSIBLE TRANSLATION INITIATION INHIBITOR  H 1 0 5
20  Ligand   POSSIBLE TRANSLATION INITIATION INHIBITOR  I 1 0 5
21  Ligand   POSSIBLE TRANSLATION INITIATION INHIBITOR  J 1 0 5
22  Ligand   POSSIBLE TRANSLATION INITIATION INHIBITOR  K 2 0 10
23  Ligand   POSSIBLE TRANSLATION INITIATION INHIBITOR  L 1 0 5
24 Water     25 0 25
total       1581 11606 95

Proteins
Unit 1 SER28 LEU29 LYS30 ILE31 ILE32 ALA33 PRO34 THR35 ASP36 LYS37 THR38 ILE39 THR40 PRO41 SER42 GLY43 THR44 TRP45 SER46 ILE47 GLY48 ALA49 ARG50 ALA51 GLY52 ASP53 PHE54 VAL55 PHE56 ILE57 GLY58 GLY59 MET60 HIS61 GLY62 THR63 ASP64 ARG65 VAL66 THR67 GLY68 LYS69 MET70 VAL71 ASP72 GLY73 ASP74 GLU75 ALA76 ARG77 ILE78 ARG79 ARG80 MET81 PHE82 ASP83 ASN84 MET85 LEU86 ALA87 ALA88 ALA89 GLU90 ALA91 ALA92 GLY93 ALA94 THR95 LYS96 ALA97 ASP98 ALA99 VAL100 ARG101 LEU102 THR103 VAL104 PHE105 VAL106 THR107 ASP108 VAL109 ALA110 LYS111 TYR112 ARG113 PRO114 VAL115 VAL116 ASN117 LYS118 VAL119 GLN120 LYS121 ASP122 ILE123 TRP124 GLY125 ASP126 GLY127 PRO128 TYR129 PRO130 PRO131 ARG132 THR133 VAL134 LEU135 GLN136 VAL137 PRO138 ALA139 LEU140 ASP141 GLN142 GLY143 ASP144 ILE145 ALA146 GLU147 ILE148 ASP149 GLY150 THR151 PHE152 TYR153 ALA154 PRO155 ALA156
Unit 2 SER28 LEU29 LYS30 ILE31 ILE32 ALA33 PRO34 THR35 ASP36 LYS37 THR38 ILE39 THR40 PRO41 SER42 GLY43 THR44 TRP45 SER46 ILE47 GLY48 ALA49 ARG50 ALA51 GLY52 ASP53 PHE54 VAL55 PHE56 ILE57 GLY58 GLY59 MET60 HIS61 GLY62 THR63 ASP64 ARG65 VAL66 THR67 GLY68 LYS69 MET70 VAL71 ASP72 GLY73 ASP74 GLU75 ALA76 ARG77 ILE78 ARG79 ARG80 MET81 PHE82 ASP83 ASN84 MET85 LEU86 ALA87 ALA88 ALA89 GLU90 ALA91 ALA92 GLY93 ALA94 THR95 LYS96 ALA97 ASP98 ALA99 VAL100 ARG101 LEU102 THR103 VAL104 PHE105 VAL106 THR107 ASP108 VAL109 ALA110 LYS111 TYR112 ARG113 PRO114 VAL115 VAL116 ASN117 LYS118 VAL119 GLN120 LYS121 ASP122 ILE123 TRP124 GLY125 ASP126 GLY127 PRO128 TYR129 PRO130 PRO131 ARG132 THR133 VAL134 LEU135 GLN136 VAL137 PRO138 ALA139 LEU140 ASP141 GLN142 GLY143 ASP144 ILE145 ALA146 GLU147 ILE148 ASP149 GLY150 THR151 PHE152 TYR153 ALA154 PRO155 ALA156
Unit 3 SER28 LEU29 LYS30 ILE31 ILE32 ALA33 PRO34 THR35 ASP36 LYS37 THR38 ILE39 THR40 PRO41 SER42 GLY43 THR44 TRP45 SER46 ILE47 GLY48 ALA49 ARG50 ALA51 GLY52 ASP53 PHE54 VAL55 PHE56 ILE57 GLY58 GLY59 MET60 HIS61 GLY62 THR63 ASP64 ARG65 VAL66 THR67 GLY68 LYS69 MET70 VAL71 ASP72 GLY73 ASP74 GLU75 ALA76 ARG77 ILE78 ARG79 ARG80 MET81 PHE82 ASP83 ASN84 MET85 LEU86 ALA87 ALA88 ALA89 GLU90 ALA91 ALA92 GLY93 ALA94 THR95 LYS96 ALA97 ASP98 ALA99 VAL100 ARG101 LEU102 THR103 VAL104 PHE105 VAL106 THR107 ASP108 VAL109 ALA110 LYS111 TYR112 ARG113 PRO114 VAL115 VAL116 ASN117 LYS118 VAL119 GLN120 LYS121 ASP122 ILE123 TRP124 GLY125 ASP126 GLY127 PRO128 TYR129 PRO130 PRO131 ARG132 THR133 VAL134 LEU135 GLN136 VAL137 PRO138 ALA139 LEU140 ASP141 GLN142 GLY143 ASP144 ILE145 ALA146 GLU147 ILE148 ASP149 GLY150 THR151 PHE152 TYR153 ALA154
Unit 4 SER28 LEU29 LYS30 ILE31 ILE32 ALA33 PRO34 THR35 ASP36 LYS37 THR38 ILE39 THR40 PRO41 SER42 GLY43 THR44 TRP45 SER46 ILE47 GLY48 ALA49 ARG50 ALA51 GLY52 ASP53 PHE54 VAL55 PHE56 ILE57 GLY58 GLY59 MET60 HIS61 GLY62 THR63 ASP64 ARG65 VAL66 THR67 GLY68 LYS69 MET70 VAL71 ASP72 GLY73 ASP74 GLU75 ALA76 ARG77 ILE78 ARG79 ARG80 MET81 PHE82 ASP83 ASN84 MET85 LEU86 ALA87 ALA88 ALA89 GLU90 ALA91 ALA92 GLY93 ALA94 THR95 LYS96 ALA97 ASP98 ALA99 VAL100 ARG101 LEU102 THR103 VAL104 PHE105 VAL106 THR107 ASP108 VAL109 ALA110 LYS111 TYR112 ARG113 PRO114 VAL115 VAL116 ASN117 LYS118 VAL119 GLN120 LYS121 ASP122 ILE123 TRP124 GLY125 ASP126 GLY127 PRO128 TYR129 PRO130 PRO131 ARG132 THR133 VAL134 LEU135 GLN136 VAL137 PRO138 ALA139 LEU140 ASP141 GLN142 GLY143 ASP144 ILE145 ALA146 GLU147 ILE148 ASP149 GLY150 THR151 PHE152 TYR153 ALA154 PRO155 ALA156
Unit 5 SER28 LEU29 LYS30 ILE31 ILE32 ALA33 PRO34 THR35 ASP36 LYS37 THR38 ILE39 THR40 PRO41 SER42 GLY43 THR44 TRP45 SER46 ILE47 GLY48 ALA49 ARG50 ALA51 GLY52 ASP53 PHE54 VAL55 PHE56 ILE57 GLY58 GLY59 MET60 HIS61 GLY62 THR63 ASP64 ARG65 VAL66 THR67 GLY68 LYS69 MET70 VAL71 ASP72 GLY73 ASP74 GLU75 ALA76 ARG77 ILE78 ARG79 ARG80 MET81 PHE82 ASP83 ASN84 MET85 LEU86 ALA87 ALA88 ALA89 GLU90 ALA91 ALA92 GLY93 ALA94 THR95 LYS96 ALA97 ASP98 ALA99 VAL100 ARG101 LEU102 THR103 VAL104 PHE105 VAL106 THR107 ASP108 VAL109 ALA110 LYS111 TYR112 ARG113 PRO114 VAL115 VAL116 ASN117 LYS118 VAL119 GLN120 LYS121 ASP122 ILE123 TRP124 GLY125 ASP126 GLY127 PRO128 TYR129 PRO130 PRO131 ARG132 THR133 VAL134 LEU135 GLN136 VAL137 PRO138 ALA139 LEU140 ASP141 GLN142 GLY143 ASP144 ILE145 ALA146 GLU147 ILE148 ASP149 GLY150 THR151 PHE152 TYR153 ALA154 PRO155 ALA156
Unit 6 SER28 LEU29 LYS30 ILE31 ILE32 ALA33 PRO34 THR35 ASP36 LYS37 THR38 ILE39 THR40 PRO41 SER42 GLY43 THR44 TRP45 SER46 ILE47 GLY48 ALA49 ARG50 ALA51 GLY52 ASP53 PHE54 VAL55 PHE56 ILE57 GLY58 GLY59 MET60 HIS61 GLY62 THR63 ASP64 ARG65 VAL66 THR67 GLY68 LYS69 MET70 VAL71 ASP72 GLY73 ASP74 GLU75 ALA76 ARG77 ILE78 ARG79 ARG80 MET81 PHE82 ASP83 ASN84 MET85 LEU86 ALA87 ALA88 ALA89 GLU90 ALA91 ALA92 GLY93 ALA94 THR95 LYS96 ALA97 ASP98 ALA99 VAL100 ARG101 LEU102 THR103 VAL104 PHE105 VAL106 THR107 ASP108 VAL109 ALA110 LYS111 TYR112 ARG113 PRO114 VAL115 VAL116 ASN117 LYS118 VAL119 GLN120 LYS121 ASP122 ILE123 TRP124 GLY125 ASP126 GLY127 PRO128 TYR129 PRO130 PRO131 ARG132 THR133 VAL134 LEU135 GLN136 VAL137 PRO138 ALA139 LEU140 ASP141 GLN142 GLY143 ASP144 ILE145 ALA146 GLU147 ILE148 ASP149 GLY150 THR151 PHE152 TYR153 ALA154
Unit 7 SER28 LEU29 LYS30 ILE31 ILE32 ALA33 PRO34 THR35 ASP36 LYS37 THR38 ILE39 THR40 PRO41 SER42 GLY43 THR44 TRP45 SER46 ILE47 GLY48 ALA49 ARG50 ALA51 GLY52 ASP53 PHE54 VAL55 PHE56 ILE57 GLY58 GLY59 MET60 HIS61 GLY62 THR63 ASP64 ARG65 VAL66 THR67 GLY68 LYS69 MET70 VAL71 ASP72 GLY73 ASP74 GLU75 ALA76 ARG77 ILE78 ARG79 ARG80 MET81 PHE82 ASP83 ASN84 MET85 LEU86 ALA87 ALA88 ALA89 GLU90 ALA91 ALA92 GLY93 ALA94 THR95 LYS96 ALA97 ASP98 ALA99 VAL100 ARG101 LEU102 THR103 VAL104 PHE105 VAL106 THR107 ASP108 VAL109 ALA110 LYS111 TYR112 ARG113 PRO114 VAL115 VAL116 ASN117 LYS118 VAL119 GLN120 LYS121 ASP122 ILE123 TRP124 GLY125 ASP126 GLY127 PRO128 TYR129 PRO130 PRO131 ARG132 THR133 VAL134 LEU135 GLN136 VAL137 PRO138 ALA139 LEU140 ASP141 GLN142 GLY143 ASP144 ILE145 ALA146 GLU147 ILE148 ASP149 GLY150 THR151 PHE152 TYR153 ALA154 PRO155 ALA156
Unit 8 SER28 LEU29 LYS30 ILE31 ILE32 ALA33 PRO34 THR35 ASP36 LYS37 THR38 ILE39 THR40 PRO41 SER42 GLY43 THR44 TRP45 SER46 ILE47 GLY48 ALA49 ARG50 ALA51 GLY52 ASP53 PHE54 VAL55 PHE56 ILE57 GLY58 GLY59 MET60 HIS61 GLY62 THR63 ASP64 ARG65 VAL66 THR67 GLY68 LYS69 MET70 VAL71 ASP72 GLY73 ASP74 GLU75 ALA76 ARG77 ILE78 ARG79 ARG80 MET81 PHE82 ASP83 ASN84 MET85 LEU86 ALA87 ALA88 ALA89 GLU90 ALA91 ALA92 GLY93 ALA94 THR95 LYS96 ALA97 ASP98 ALA99 VAL100 ARG101 LEU102 THR103 VAL104 PHE105 VAL106 THR107 ASP108 VAL109 ALA110 LYS111 TYR112 ARG113 PRO114 VAL115 VAL116 ASN117 LYS118 VAL119 GLN120 LYS121 ASP122 ILE123 TRP124 GLY125 ASP126 GLY127 PRO128 TYR129 PRO130 PRO131 ARG132 THR133 VAL134 LEU135 GLN136 VAL137 PRO138 ALA139 LEU140 ASP141 GLN142 GLY143 ASP144 ILE145 ALA146 GLU147 ILE148 ASP149 GLY150 THR151 PHE152 TYR153 ALA154 PRO155 ALA156
Unit 9 SER28 LEU29 LYS30 ILE31 ILE32 ALA33 PRO34 THR35 ASP36 LYS37 THR38 ILE39 THR40 PRO41 SER42 GLY43 THR44 TRP45 SER46 ILE47 GLY48 ALA49 ARG50 ALA51 GLY52 ASP53 PHE54 VAL55 PHE56 ILE57 GLY58 GLY59 MET60 HIS61 GLY62 THR63 ASP64 ARG65 VAL66 THR67 GLY68 LYS69 MET70 VAL71 ASP72 GLY73 ASP74 GLU75 ALA76 ARG77 ILE78 ARG79 ARG80 MET81 PHE82 ASP83 ASN84 MET85 LEU86 ALA87 ALA88 ALA89 GLU90 ALA91 ALA92 GLY93 ALA94 THR95 LYS96 ALA97 ASP98 ALA99 VAL100 ARG101 LEU102 THR103 VAL104 PHE105 VAL106 THR107 ASP108 VAL109 ALA110 LYS111 TYR112 ARG113 PRO114 VAL115 VAL116 ASN117 LYS118 VAL119 GLN120 LYS121 ASP122 ILE123 TRP124 GLY125 ASP126 GLY127 PRO128 TYR129 PRO130 PRO131 ARG132 THR133 VAL134 LEU135 GLN136 VAL137 PRO138 ALA139 LEU140 ASP141 GLN142 GLY143 ASP144 ILE145 ALA146 GLU147 ILE148 ASP149 GLY150 THR151 PHE152 TYR153 ALA154 PRO155
Unit 10 SER28 LEU29 LYS30 ILE31 ILE32 ALA33 PRO34 THR35 ASP36 LYS37 THR38 ILE39 THR40 PRO41 SER42 GLY43 THR44 TRP45 SER46 ILE47 GLY48 ALA49 ARG50 ALA51 GLY52 ASP53 PHE54 VAL55 PHE56 ILE57 GLY58 GLY59 MET60 HIS61 GLY62 THR63 ASP64 ARG65 VAL66 THR67 GLY68 LYS69 MET70 VAL71 ASP72 GLY73 ASP74 GLU75 ALA76 ARG77 ILE78 ARG79 ARG80 MET81 PHE82 ASP83 ASN84 MET85 LEU86 ALA87 ALA88 ALA89 GLU90 ALA91 ALA92 GLY93 ALA94 THR95 LYS96 ALA97 ASP98 ALA99 VAL100 ARG101 LEU102 THR103 VAL104 PHE105 VAL106 THR107 ASP108 VAL109 ALA110 LYS111 TYR112 ARG113 PRO114 VAL115 VAL116 ASN117 LYS118 VAL119 GLN120 LYS121 ASP122 ILE123 TRP124 GLY125 ASP126 GLY127 PRO128 TYR129 PRO130 PRO131 ARG132 THR133 VAL134 LEU135 GLN136 VAL137 PRO138 ALA139 LEU140 ASP141 GLN142 GLY143 ASP144 ILE145 ALA146 GLU147 ILE148 ASP149 GLY150 THR151 PHE152 TYR153 ALA154 PRO155 ALA156
Unit 11 SER28 LEU29 LYS30 ILE31 ILE32 ALA33 PRO34 THR35 ASP36 LYS37 THR38 ILE39 THR40 PRO41 SER42 GLY43 THR44 TRP45 SER46 ILE47 GLY48 ALA49 ARG50 ALA51 GLY52 ASP53 PHE54 VAL55 PHE56 ILE57 GLY58 GLY59 MET60 HIS61 GLY62 THR63 ASP64 ARG65 VAL66 THR67 GLY68 LYS69 MET70 VAL71 ASP72 GLY73 ASP74 GLU75 ALA76 ARG77 ILE78 ARG79 ARG80 MET81 PHE82 ASP83 ASN84 MET85 LEU86 ALA87 ALA88 ALA89 GLU90 ALA91 ALA92 GLY93 ALA94 THR95 LYS96 ALA97 ASP98 ALA99 VAL100 ARG101 LEU102 THR103 VAL104 PHE105 VAL106 THR107 ASP108 VAL109 ALA110 LYS111 TYR112 ARG113 PRO114 VAL115 VAL116 ASN117 LYS118 VAL119 GLN120 LYS121 ASP122 ILE123 TRP124 GLY125 ASP126 GLY127 PRO128 TYR129 PRO130 PRO131 ARG132 THR133 VAL134 LEU135 GLN136 VAL137 PRO138 ALA139 LEU140 ASP141 GLN142 GLY143 ASP144 ILE145 ALA146 GLU147 ILE148 ASP149 GLY150 THR151 PHE152 TYR153 ALA154 PRO155 ALA156
Unit 12 SER28 LEU29 LYS30 ILE31 ILE32 ALA33 PRO34 THR35 ASP36 LYS37 THR38 ILE39 THR40 PRO41 SER42 GLY43 THR44 TRP45 SER46 ILE47 GLY48 ALA49 ARG50 ALA51 GLY52 ASP53 PHE54 VAL55 PHE56 ILE57 GLY58 GLY59 MET60 HIS61 GLY62 THR63 ASP64 ARG65 VAL66 THR67 GLY68 LYS69 MET70 VAL71 ASP72 GLY73 ASP74 GLU75 ALA76 ARG77 ILE78 ARG79 ARG80 MET81 PHE82 ASP83 ASN84 MET85 LEU86 ALA87 ALA88 ALA89 GLU90 ALA91 ALA92 GLY93 ALA94 THR95 LYS96 ALA97 ASP98 ALA99 VAL100 ARG101 LEU102 THR103 VAL104 PHE105 VAL106 THR107 ASP108 VAL109 ALA110 LYS111 TYR112 ARG113 PRO114 VAL115 VAL116 ASN117 LYS118 VAL119 GLN120 LYS121 ASP122 ILE123 TRP124 GLY125 ASP126 GLY127 PRO128 TYR129 PRO130 PRO131 ARG132 THR133 VAL134 LEU135 GLN136 VAL137 PRO138 ALA139 LEU140 ASP141 GLN142 GLY143 ASP144 ILE145 ALA146 GLU147 ILE148 ASP149 GLY150 THR151 PHE152 TYR153 ALA154 PRO155

Ligands
Unit 13 SO41 SO415
Unit 14 SO43
Unit 15 SO45
Unit 16 SO44 SO46
Unit 17 SO47
Unit 18 SO48
Unit 19 SO49
Unit 20 SO410
Unit 21 SO411
Unit 22 SO412 SO414
Unit 23 SO413

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany