3LM1 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE ANALYSIS OF MACLURA POMIFERA AGGLUTININ COMPLEX WITH P-NITROPHENYL-GALNAC

Authors :   J. Huang, Z. Xu, D. Wang, C. Ogato, T. Hirama, K. Palczewski, S. L. Hazen, N. M. Young

Date :   29 Jan 10 (Deposition) - 22 Sep 10 (Release) - 22 Dec 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,E,F,I,J,M,N  (1x)
Biol. Unit 2: C,D,G,H,K,L,O,P  (1x)

Keywords :   Maclura Pomifera Agglutinin, Mpa, Mpa Complex, (P)-Nitrophenyl- Galnac, Lectin, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Huang, Z. Xu, D. Wang, C. M. Ogata, K. Palczewski, X. Lee, N. M. Young
Characterization Of The Secondary Binding Sites Of Maclura Pomifera Agglutinin By Glycan Array And Crystallographic Analyses.
Glycobiology V. 20 1643 2010
PubMed-ID: 20826825 | Reference-DOI: 10.1093/GLYCOB/CWQ118

Molecule 1 - AGGLUTININ ALPHA CHAIN
	Chains	:	A, C, E, G, I, K, M, O
	Organism Common	:	OSAGE ORANGE
	Organism Scientific	:	MACLURA POMIFERA
	Organism Taxid	:	3496
	Other Details	:	FROM THE SEEDS OF THE MORACEAE PLANT FAMILY
	Synonym	:	MPA

Molecule 2 - AGGLUTININ BETA-2 CHAIN
	Chains	:	B, D, F, H, J, L, N, P
	Organism Common	:	OSAGE ORANGE
	Organism Scientific	:	MACLURA POMIFERA
	Organism Taxid	:	3496
	Other Details	:	FROM THE SEEDS OF THE MORACEAE PLANT FAMILY
	Synonym	:	MPA

		1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J	K	L	M	N	O	P
Biological Unit 1 (1x)	:	A	B			E	F			I	J			M	N
Biological Unit 2 (1x)	:			C	D			G	H			K	L			O	P

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 7)

No.	Name	Count	Type	Full Name
1	LEC	7	Ligand/Ion	N-[(2S,3R,4R,5S,6R)-4,5-DIHYDROXY-6-(HYDROXYMETHYL)-2-(4-NITROPHENOXY)OXAN-3-YL]ETHANAMIDE

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	LEC	4	Ligand/Ion	N-[(2S,3R,4R,5S,6R)-4,5-DIHYDROXY-6-(HYDROXYMETHYL)-2-(4-NITROPHENOXY)OXAN-3-YL]ETHANAMIDE

Biological Unit 2 (1, 3)

No.	Name	Count	Type	Full Name
1	LEC	3	Ligand/Ion	N-[(2S,3R,4R,5S,6R)-4,5-DIHYDROXY-6-(HYDROXYMETHYL)-2-(4-NITROPHENOXY)OXAN-3-YL]ETHANAMIDE

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:1 , PHE A:47 , GLU A:76 , TYR A:78 , GLY A:121 , TYR A:122 , TRP A:123 , ASP A:125 , HOH A:289 , HOH A:499 , HOH A:705 , ARG C:13 , PHE C:60 , PRO C:61	BINDING SITE FOR RESIDUE LEC A 134
2	AC2	SOFTWARE	GLY C:1 , PHE C:47 , GLU C:76 , TYR C:78 , GLY C:121 , TYR C:122 , TRP C:123 , ASP C:125 , HOH C:159 , HOH C:257 , HOH C:402 , ARG G:13 , LEU G:58 , PHE G:60	BINDING SITE FOR RESIDUE LEC C 134
3	AC3	SOFTWARE	ARG A:13 , GLU A:14 , THR A:31 , PRO A:38 , SER A:57 , GLY E:1 , PHE E:47 , TYR E:78 , GLY E:121 , TYR E:122 , TRP E:123 , ASP E:125 , HOH E:173	BINDING SITE FOR RESIDUE LEC E 134
4	AC4	SOFTWARE	ARG E:13 , PHE E:60 , PRO E:61 , GLY G:1 , PHE G:47 , GLU G:76 , TYR G:78 , GLY G:121 , TYR G:122 , TRP G:123 , ASP G:125 , HOH G:413	BINDING SITE FOR RESIDUE LEC G 134
5	AC5	SOFTWARE	GLY I:1 , PHE I:47 , GLU I:76 , TYR I:78 , GLY I:121 , TYR I:122 , TRP I:123 , ASP I:125 , HOH I:394 , HOH K:789 , GLU O:76 , TYR O:78 , TYR O:122	BINDING SITE FOR RESIDUE LEC I 134
6	AC6	SOFTWARE	GLY K:1 , PHE K:47 , GLU K:76 , TYR K:78 , GLY K:121 , TYR K:122 , TRP K:123 , ASP K:125	BINDING SITE FOR RESIDUE LEC K 134
7	AC7	SOFTWARE	TYR I:78 , GLY M:1 , PHE M:47 , GLU M:76 , TYR M:78 , GLY M:121 , TYR M:122 , TRP M:123 , ASP M:125 , TYR O:122	BINDING SITE FOR RESIDUE LEC M 134

(no "SS Bond" information available for 3LM1)

(no "Cis Peptide Bond" information available for 3LM1)

Asymmetric Unit (7, 56)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_LECA_MACPO_001 *	T	31	V	LECA_MACPO	---	---	A/C/E/G/I/K/M/O	T	31	V
2	UniProt	VAR_LECA_MACPO_002 *	K	52	T	LECA_MACPO	---	---	A/C/E/G/I/K/M/O	K	52	T
3	UniProt	VAR_LECA_MACPO_003 *	E	59	D	LECA_MACPO	---	---	A/C/E/G/I/K/M/O	E	59	D
4	UniProt	VAR_LECA_MACPO_004 *	V	72	I	LECA_MACPO	---	---	A/C/E/G/I/K/M/O	V	72	I
5	UniProt	VAR_LECA_MACPO_005 *	I	81	V	LECA_MACPO	---	---	A/C/E/G/I/K/M/O	I	81	V
6	UniProt	VAR_LECA_MACPO_006 *	N	110	Q	LECA_MACPO	---	---	A/C/E/G/I/K/M/O	N	110	Q
7	UniProt	VAR_LECA_MACPO_007 *	L	112	G	LECA_MACPO	---	---	A/C/E/G/I/K/M/O	L	112	G
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (7, 28)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_LECA_MACPO_001 *	T	31	V	LECA_MACPO	---	---	A/E/I/M	T	31	V
2	UniProt	VAR_LECA_MACPO_002 *	K	52	T	LECA_MACPO	---	---	A/E/I/M	K	52	T
3	UniProt	VAR_LECA_MACPO_003 *	E	59	D	LECA_MACPO	---	---	A/E/I/M	E	59	D
4	UniProt	VAR_LECA_MACPO_004 *	V	72	I	LECA_MACPO	---	---	A/E/I/M	V	72	I
5	UniProt	VAR_LECA_MACPO_005 *	I	81	V	LECA_MACPO	---	---	A/E/I/M	I	81	V
6	UniProt	VAR_LECA_MACPO_006 *	N	110	Q	LECA_MACPO	---	---	A/E/I/M	N	110	Q
7	UniProt	VAR_LECA_MACPO_007 *	L	112	G	LECA_MACPO	---	---	A/E/I/M	L	112	G
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (7, 28)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_LECA_MACPO_001 *	T	31	V	LECA_MACPO	---	---	C/G/K/O	T	31	V
2	UniProt	VAR_LECA_MACPO_002 *	K	52	T	LECA_MACPO	---	---	C/G/K/O	K	52	T
3	UniProt	VAR_LECA_MACPO_003 *	E	59	D	LECA_MACPO	---	---	C/G/K/O	E	59	D
4	UniProt	VAR_LECA_MACPO_004 *	V	72	I	LECA_MACPO	---	---	C/G/K/O	V	72	I
5	UniProt	VAR_LECA_MACPO_005 *	I	81	V	LECA_MACPO	---	---	C/G/K/O	I	81	V
6	UniProt	VAR_LECA_MACPO_006 *	N	110	Q	LECA_MACPO	---	---	C/G/K/O	N	110	Q
7	UniProt	VAR_LECA_MACPO_007 *	L	112	G	LECA_MACPO	---	---	C/G/K/O	L	112	G
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	JACALIN_LECTIN	PS51752	Jacalin-type lectin domain profile.	LECA_MACPO	1-133	8	A:1-133 C:1-133 E:1-133 G:1-133 I:1-133 K:1-133 M:1-133 O:1-133

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	JACALIN_LECTIN	PS51752	Jacalin-type lectin domain profile.	LECA_MACPO	1-133	4	A:1-133 - E:1-133 - I:1-133 - M:1-133 -

Biological Unit 2 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	JACALIN_LECTIN	PS51752	Jacalin-type lectin domain profile.	LECA_MACPO	1-133	4	- C:1-133 - G:1-133 - K:1-133 - O:1-133

(no "Exon" information available for 3LM1)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:133
 aligned with LECA_MACPO | P18674 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130   
           LECA_MACPO     1 GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL 133
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.....eeeeeeeee.....eeeeeeeeee..eeee...........eeeeee.......eeeeeeeeeee..eeeeeeeeeee...eeeeee....eeeeeeeee.eeeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------V--------------------T------D------------I--------V----------------------------Q-G--------------------- SAPs(SNPs)
                    PROSITE JACALIN_LECTIN  PDB: A:1-133 UniProt: 1-133                                                                                           PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lm1 A   1 GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL 133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130

Chain B from PDB  Type:PROTEIN  Length:15
 aligned with LECB2_MACPO | P18676 from UniProtKB/Swiss-Prot  Length:20

    Alignment length:15
                                    11     
          LECB2_MACPO     2 RNGKSQSIIVGPWGD  16
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author .......eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                 3lm1 B   2 RNGKSQSIIVGPWGD  16
                                    11

Chain C from PDB  Type:PROTEIN  Length:133
 aligned with LECA_MACPO | P18674 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130   
           LECA_MACPO     1 GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL 133
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.....eeeeeeeee.....eeeeeeeeee..eeee...........eeeeee.......eeeeeeeeeee..eeeeeeeeeee...eeeeee....eeeeee....eeeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------V--------------------T------D------------I--------V----------------------------Q-G--------------------- SAPs(SNPs)
                    PROSITE JACALIN_LECTIN  PDB: C:1-133 UniProt: 1-133                                                                                           PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lm1 C   1 GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL 133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130

Chain D from PDB  Type:PROTEIN  Length:14
 aligned with LECB2_MACPO | P18676 from UniProtKB/Swiss-Prot  Length:20

    Alignment length:14
                                    12    
          LECB2_MACPO     3 NGKSQSIIVGPWGD  16
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author ......eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                 3lm1 D   3 NGKSQSIIVGPWGD  16
                                    12

Chain E from PDB  Type:PROTEIN  Length:133
 aligned with LECA_MACPO | P18674 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130   
           LECA_MACPO     1 GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL 133
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.....eeeeeeeee.....eeeeeeeeee..eeee...........eeeeee.......eeeeeeeeeee..eeeeeeeeeee...eeeeee....eeeeee....eeeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------V--------------------T------D------------I--------V----------------------------Q-G--------------------- SAPs(SNPs)
                    PROSITE JACALIN_LECTIN  PDB: E:1-133 UniProt: 1-133                                                                                           PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lm1 E   1 GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL 133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130

Chain F from PDB  Type:PROTEIN  Length:15
 aligned with LECB2_MACPO | P18676 from UniProtKB/Swiss-Prot  Length:20

    Alignment length:15
                                    11     
          LECB2_MACPO     2 RNGKSQSIIVGPWGD  16
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author .......eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                 3lm1 F   2 RNGKSQSIIVGPWGD  16
                                    11

Chain G from PDB  Type:PROTEIN  Length:133
 aligned with LECA_MACPO | P18674 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130   
           LECA_MACPO     1 GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL 133
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.....eeeeeeeee.....eeeeeeeeee..eeee...........eeeeee.......eeeeeeeeeee..eeeeeeeeeee...eeeeee....eeeeeeeee.eeeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------V--------------------T------D------------I--------V----------------------------Q-G--------------------- SAPs(SNPs)
                    PROSITE JACALIN_LECTIN  PDB: G:1-133 UniProt: 1-133                                                                                           PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lm1 G   1 GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL 133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130

Chain H from PDB  Type:PROTEIN  Length:15
 aligned with LECB2_MACPO | P18676 from UniProtKB/Swiss-Prot  Length:20

    Alignment length:15
                                    11     
          LECB2_MACPO     2 RNGKSQSIIVGPWGD  16
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author .......eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                 3lm1 H   2 RNGKSQSIIVGPWGD  16
                                    11

Chain I from PDB  Type:PROTEIN  Length:133
 aligned with LECA_MACPO | P18674 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130   
           LECA_MACPO     1 GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL 133
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.....eeeeeeeee.....eeeeeeeeee..eeee.............eeee.......eeeeeeeeeee..eeeeeeeeeee...eeeeee....eeeeeeeee.eeeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------V--------------------T------D------------I--------V----------------------------Q-G--------------------- SAPs(SNPs)
                    PROSITE JACALIN_LECTIN  PDB: I:1-133 UniProt: 1-133                                                                                           PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lm1 I   1 GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL 133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130

Chain J from PDB  Type:PROTEIN  Length:14
 aligned with LECB2_MACPO | P18676 from UniProtKB/Swiss-Prot  Length:20

    Alignment length:14
                                    12    
          LECB2_MACPO     3 NGKSQSIIVGPWGD  16
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author ......eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                 3lm1 J   3 NGKSQSIIVGPWGD  16
                                    12

Chain K from PDB  Type:PROTEIN  Length:133
 aligned with LECA_MACPO | P18674 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130   
           LECA_MACPO     1 GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL 133
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.....eeeeeeeee.....eeeeeeeeee..eeee...........eeeeee.......eeeeeeeeeee..eeeeeeeeeee...eeeeee....eeeeee....eeeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------V--------------------T------D------------I--------V----------------------------Q-G--------------------- SAPs(SNPs)
                    PROSITE JACALIN_LECTIN  PDB: K:1-133 UniProt: 1-133                                                                                           PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lm1 K   1 GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL 133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130

Chain L from PDB  Type:PROTEIN  Length:14
 aligned with LECB2_MACPO | P18676 from UniProtKB/Swiss-Prot  Length:20

    Alignment length:14
                                    12    
          LECB2_MACPO     3 NGKSQSIIVGPWGD  16
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author ......eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                 3lm1 L   3 NGKSQSIIVGPWGD  16
                                    12

Chain M from PDB  Type:PROTEIN  Length:133
 aligned with LECA_MACPO | P18674 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130   
           LECA_MACPO     1 GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL 133
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.....eeeeeeeee.....eeeeeeeeee..eeeeeeee.......eeeeee.......eeeeeeeeeee..eeeeeeeeeee...eeeeee....eeeeeeeee.eeeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------V--------------------T------D------------I--------V----------------------------Q-G--------------------- SAPs(SNPs)
                    PROSITE JACALIN_LECTIN  PDB: M:1-133 UniProt: 1-133                                                                                           PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lm1 M   1 GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL 133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130

Chain N from PDB  Type:PROTEIN  Length:15
 aligned with LECB2_MACPO | P18676 from UniProtKB/Swiss-Prot  Length:20

    Alignment length:15
                                    11     
          LECB2_MACPO     2 RNGKSQSIIVGPWGD  16
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author .......eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                 3lm1 N   2 RNGKSQSIIVGPWGD  16
                                    11

Chain O from PDB  Type:PROTEIN  Length:133
 aligned with LECA_MACPO | P18674 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130   
           LECA_MACPO     1 GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL 133
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Jacalin-3lm1O01 O:1-133                                                                                                               Pfam domains (1)
           Pfam domains (2) Jacalin-3lm1O02 O:1-133                                                                                                               Pfam domains (2)
           Pfam domains (3) Jacalin-3lm1O03 O:1-133                                                                                                               Pfam domains (3)
           Pfam domains (4) Jacalin-3lm1O04 O:1-133                                                                                                               Pfam domains (4)
           Pfam domains (5) Jacalin-3lm1O05 O:1-133                                                                                                               Pfam domains (5)
           Pfam domains (6) Jacalin-3lm1O06 O:1-133                                                                                                               Pfam domains (6)
           Pfam domains (7) Jacalin-3lm1O07 O:1-133                                                                                                               Pfam domains (7)
           Pfam domains (8) Jacalin-3lm1O08 O:1-133                                                                                                               Pfam domains (8)
         Sec.struct. author .eeee.....eeeeeeeee.....eeeeeeeeee..eeee.............eeee.......eeeeeeeeeee..eeeeeeeeeee...eeeeee....eeeeeeeee.eeeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------V--------------------T------D------------I--------V----------------------------Q-G--------------------- SAPs(SNPs)
                    PROSITE JACALIN_LECTIN  PDB: O:1-133 UniProt: 1-133                                                                                           PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lm1 O   1 GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL 133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130

Chain P from PDB  Type:PROTEIN  Length:15
 aligned with LECB2_MACPO | P18676 from UniProtKB/Swiss-Prot  Length:20

    Alignment length:15
                                    11     
          LECB2_MACPO     2 RNGKSQSIIVGPWGD  16
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author .......eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                 3lm1 P   2 RNGKSQSIIVGPWGD  16
                                    11

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3LM1)

(no "CATH Domain" information available for 3LM1)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Jacalin] (35)

Family: Jacalin (35)

Maclura pomifera (Osage orange) (Ioxylon pomiferum) (4)

1a	Jacalin-3lm1O01	O:1-133
1b	Jacalin-3lm1O02	O:1-133
1c	Jacalin-3lm1O03	O:1-133
1d	Jacalin-3lm1O04	O:1-133
1e	Jacalin-3lm1O05	O:1-133
1f	Jacalin-3lm1O06	O:1-133
1g	Jacalin-3lm1O07	O:1-133
1h	Jacalin-3lm1O08	O:1-133

Asymmetric Unit(hide GO term definitions)

Chain A,C,E,G,I,K,M,O (LECA_MACPO | P18674)

molecular function
	GO:0030246		carbohydrate binding		Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.

Chain B,D,F,H,J,L,N,P (LECB2_MACPO | P18676)

molecular function
	GO:0030246		carbohydrate binding		Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		LEC	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3lm1)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	3lm1
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	LECA_MACPO \| P18674
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt
	LECB2_MACPO \| P18676
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	LECA_MACPO \| P18674
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	LECB2_MACPO \| P18676
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	LECA_MACPO \| P18674	:	1jot 3lly 3llz
	LECB2_MACPO \| P18676	:	1jot 3lly 3llz

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 7)

Sites (7, 7)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (7, 56)

PROSITE Motifs (1, 8)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 8)

Gene Ontology (1, 2)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File